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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.330169 (57 seq.)
>W1710913392
LNSK01000007
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
21193
21117
-
His
GTG
[ENA]
¡û
>W1711127842
LURA01000036
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
16224
16300
+
His
GTG
[ENA]
¡û
>W1711127890
LURB01000032
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
71793
71869
+
His
GTG
[ENA]
¡û
>W1711127916
LURC01000191
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
8
84
+
His
GTG
[ENA]
¡û
>W1711127946
LURE01000012
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
28964
29040
+
His
GTG
[ENA]
¡û
>W1711127998
LURG01000132
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
663
587
-
His
GTG
[ENA]
¡û
>W1711128028
LURH01000015
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
9136
9212
+
His
GTG
[ENA]
¡û
>W1711128050
LURI01000002
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
213395
213319
-
His
GTG
[ENA]
¡û
>W131100429
AOUN01000009
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
134978
134902
-
His
GTG
[ENA]
¡û
>C019752
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
1587479
1587403
-
His
GTG
[Ensembl]
¡û
>WENV180292110
OBIV01314451
[OBIV] soil metagenome; Clay
135
211
+
His
GTG
[ENA]
¡û
>WENV180690306
OCZS010002373
[OCZS] soil metagenome; soil
2823
2899
+
His
GTG
[ENA]
¡û
>WENV181123049
OEFO01055293
[OEFO] soil metagenome; soil
237
161
-
His
GTG
[ENA]
¡û
>WENV181155252
OEID01051869
[OEID] soil metagenome; soil
264
188
-
His
GTG
[ENA]
¡û
>WENV181162265
OEIN01022438
[OEIN] soil metagenome; soil
181
105
-
His
GTG
[ENA]
¡û
>WENV181163876
OEIQ01315568
[OEIQ] soil metagenome; soil
71
147
+
His
GTG
[ENA]
¡û
>WENV181308420
OFIS01016760
[OFIS] sludge metagenome; sludge
317
393
+
His
GTG
[ENA]
¡û
>WENV181402299
OFTY01000484
[OFTY] sludge metagenome; sludge
20032
20108
+
His
GTG
[ENA]
¡û
>WENV170727459
LULE01000118
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
9136
9212
+
His
GTG
[ENA]
¡û
>WENV170728817
LULF01001082
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
612
688
+
His
GTG
[ENA]
¡û
>WENV170729774
LULG01001099
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
663
587
-
His
GTG
[ENA]
¡û
>WENV170732316
LULI01033656
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
704
780
+
His
GTG
[ENA]
¡û
>WENV170732451
LULJ01000004
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
95734
95810
+
His
GTG
[ENA]
¡û
>WENV170734449
LULK01006227
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
1544
1620
+
His
GTG
[ENA]
¡û
>WENV170736332
LULM01001124
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
1738
1814
+
His
GTG
[ENA]
¡û
>WENV170737573
LULO01000755
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
17431
17507
+
His
GTG
[ENA]
¡û
>WENV170738352
LULP01000022
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
28964
29040
+
His
GTG
[ENA]
¡û
>WENV170739619
LULQ01005421
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
4587
4663
+
His
GTG
[ENA]
¡û
>WENV170742112
LULU01001213
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
8
84
+
His
GTG
[ENA]
¡û
>WENV170742664
LULV01000064
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
71793
71869
+
His
GTG
[ENA]
¡û
>WENV170743439
LULW01000053
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
16224
16300
+
His
GTG
[ENA]
¡û
>WENV170745704
LULY01029541
[LULY] marine metagenome; Red Sea water column Station 91 - depth 200m
280
356
+
His
GTG
[ENA]
¡û
>WENV170758967
LUMS01000626
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
730
654
-
His
GTG
[ENA]
¡û
>WENV170759584
LUMT01000018
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
213395
213319
-
His
GTG
[ENA]
¡û
>WENV170761520
LUMV01000866
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
701
625
-
His
GTG
[ENA]
¡û
>W09102943
AAIP01000002
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
392052
391976
-
His
GTG
[ENA]
¡û
>W1910501767
FYAT01000012
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
531072
530996
-
His
GTG
[ENA]
¡û
>W1911411554
NWUR01000001
Alphaproteobacteria
Sphingopyxis ummariensis DSM 24316 [NWUR]
608438
608362
-
His
GTG
[ENA]
¡û
>W1810725234
QOCK01000001
Alphaproteobacteria
'Sphingomonas ginsengisoli' Hoang et al. 2012 KCTC 12630 [QOCK]
30431
30355
-
His
GTG
[ENA]
¡û
>W2010421499
FYAT01000012
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
531072
530996
-
His
GTG
[ENA]
¡û
>W2011138001
NWUR01000001
Alphaproteobacteria
Sphingopyxis ummariensis DSM 24316 [NWUR]
608438
608362
-
His
GTG
[ENA]
¡û
>C211082736
CP050249
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae YC-JH3 [CP050249]
2208226
2208150
-
His
GTG
-
¡û
>C231364364
CP095845
Alphaproteobacteria
Sphingopyxis sp. GC21 [CP095845]
1958286
1958210
-
His
GTG
-
¡û
>C241096716
CP045434
Alphaproteobacteria
Sphingomonas ginsengisoli An et al. 2013 KACC 16858 [CP045434]
899136
899060
-
His
GTG
-
¡û
>C161055618
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
3659477
3659401
-
His
GTG
[Ensembl]
¡û
>W1610077700
BCZQ01000036
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
28482
28558
+
His
GTG
[ENA]
¡û
>W1610771751
LNSK01000007
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
21193
21117
-
His
GTG
[ENA]
¡û
>W1610938956
LURA01000036
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
16224
16300
+
His
GTG
[ENA]
¡û
>W1610939004
LURB01000032
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
71793
71869
+
His
GTG
[ENA]
¡û
>W1610939030
LURC01000191
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
8
84
+
His
GTG
[ENA]
¡û
>W1610939060
LURE01000012
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
28964
29040
+
His
GTG
[ENA]
¡û
>W1610939112
LURG01000132
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
663
587
-
His
GTG
[ENA]
¡û
>W1610939142
LURH01000015
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
9136
9212
+
His
GTG
[ENA]
¡û
>W1610939164
LURI01000002
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
213395
213319
-
His
GTG
[ENA]
¡û
>WENV081035
ABEF01023030
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
753
675
-
His
GTG
[ENA]
>W1710075338
BCZQ01000036
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
28482
28558
+
His
GTG
[ENA]
¡û
>W1710609427
FXWL01000001
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
608854
608778
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK