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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.33018 (35 seq.)
>C025660
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1755675
1755585
-
Ser
GGA
-
¡û
>W141070776
ASGQ01000011
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
5669
5579
-
Ser
GGA
[ENA]
¡û
>WENV181408664
OGCH01007920
[OGCH] hot springs metagenome; hot springs
1088
1178
+
Ser
GGA
[ENA]
¢þ
>C08010890
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1090964
1091054
+
Ser
GGA
[Ensembl]
¡û
>WENV170676181
LDZR01001314
[LDZR] terrestrial metagenome; oil reservoir sample K2
7330
7240
-
Ser
GGA
[ENA]
¢þ
>WENV170676781
LDZS01002337
[LDZS] terrestrial metagenome; oil reservoir sample K3
1269
1359
+
Ser
GGA
[ENA]
¢þ
>W09107416
ABIJ01000004
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
7002
7092
+
Ser
GGA
[ENA]
¡û
>C141011521
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1059577
1059667
+
Ser
GGA
-
¡û
>W1910635473
LNDD01000005
Thermotogota
Thermotoga sp. SG1 [LNDD]
135584
135494
-
Ser
GGA
[ENA]
¡û
>W1910635494
LNDE01000001
Thermotogota
Thermotoga sp. KOL6 [LNDE]
468930
468840
-
Ser
GGA
[ENA]
¡û
>C09110658
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
961037
960947
-
Ser
GGA
[Ensembl]
¡û
>C151004266
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1090677
1090767
+
Ser
GGA
[Ensembl]
¡û
>C151004312
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1045435
1045525
+
Ser
GGA
[Ensembl]
¡û
>C151030642
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
1233503
1233413
-
Ser
GGA
[Ensembl]
¡û
>C151074620
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1745661
1745571
-
Ser
GGA
[Ensembl]
¡û
>C151076974
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1755689
1755599
-
Ser
GGA
[Ensembl]
¡û
>C151077020
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1755689
1755599
-
Ser
GGA
[Ensembl]
¡û
>W10105846
ACXW01000007
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
36194
36284
+
Ser
GGA
[ENA]
¡û
>C10113492
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1075053
1075143
+
Ser
GGA
[Ensembl]
¡û
>W11108166
ACXW01000007
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
36194
36284
+
Ser
GGA
[ENA]
¡û
>W11180804
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
403188
403098
-
Ser
GGA
[ENA]
¡û
>W121062187
AJII01000009
Thermotogota
Thermotoga sp. EMP [AJII]
184343
184433
+
Ser
GGA
[ENA]
¡û
>C131012510
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1755691
1755601
-
Ser
GGA
-
¡û
>W1610540317
JSFG01000003
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
10847
10937
+
Ser
GGA
[ENA]
¡û
>W1610540375
JSFH01000007
Thermotogota
Thermotoga sp. Mc24 [JSFH]
74292
74382
+
Ser
GGA
[ENA]
¡û
>W1610540409
JSFI01000003
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
10842
10932
+
Ser
GGA
[ENA]
¡û
>W1610540459
JSFJ01000002
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
95182
95092
-
Ser
GGA
[ENA]
¡û
>W1610612927
LGFG01000066
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
7330
7240
-
Ser
GGA
[ENA]
¡û
>W1610613171
LGFM01000206
Thermotogota
Thermotoga sp. 47_83 [LGFM]
1269
1359
+
Ser
GGA
[ENA]
¡û
>W1710643338
JSFG01000003
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
10847
10937
+
Ser
GGA
[ENA]
¡û
>W1710643396
JSFH01000007
Thermotogota
Thermotoga sp. Mc24 [JSFH]
74292
74382
+
Ser
GGA
[ENA]
¡û
>W1710643430
JSFI01000003
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
10842
10932
+
Ser
GGA
[ENA]
¡û
>W1710643480
JSFJ01000002
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
95182
95092
-
Ser
GGA
[ENA]
¡û
>W1710734209
LGFG01000066
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
7330
7240
-
Ser
GGA
[ENA]
¡û
>W1710734378
LGFM01000206
Thermotogota
Thermotoga sp. 47_83 [LGFM]
1269
1359
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK