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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.33043 (60 seq.)
>WENV180018072
FSYC01000230
[FSYC] metagenome; soil
960
1049
+
Ser
CGA
[ENA]
¡û
>WENV170112013
CEGC01000955
[CEGC] microbial mat metagenome; grass silage
4732
4821
+
Ser
CGA
[ENA]
¡û
>WENV170112087
CEGD01000030
[CEGD] microbial mat metagenome; grass silage
4747
4836
+
Ser
CGA
[ENA]
¡û
>C181221233
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
155206
155117
-
Ser
CGA
-
¡û
>W1910183176
BJNM01000010
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
66810
66899
+
Ser
CGA
[ENA]
¡û
>W1911708788
QOZS01000041
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60015 [QOZS]
4144
4055
-
Ser
CGA
[ENA]
¡û
>W1810000631
BEWL01000028
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
6342
6431
+
Ser
CGA
[ENA]
¡û
>W1810000800
BEWP01000005
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
183398
183309
-
Ser
CGA
[ENA]
¡û
>SRA1003039
SRR002326.165838
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
55
144
+
Ser
CGA
[SRA]
>W1810603353
QGLE01000004
Alphaproteobacteria
Zavarzinia aquatilis HR-AS [QGLE]
47559
47648
+
Ser
CGA
[ENA]
¡û
>W1810603398
QGLF01000002
Alphaproteobacteria
Zavarzinia compransoris DSM 1231 [QGLF]
228381
228470
+
Ser
CGA
[ENA]
¡û
>C151006223
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
181532
181443
-
Ser
CGA
[Ensembl]
¡û
>W2010100023
BJUZ01000001
Alphaproteobacteria
Gluconobacter wancherniae NBRC 103581 [BJUZ]
1408252
1408163
-
Ser
CGA
[ENA]
¡û
>W2010605042
JABKAT010000036
Alphaproteobacteria
Acetobacteraceae bacterium PAMC 26568 [JABKAT]
8671
8582
-
Ser
CGA
[ENA]
¡û
>W2011281926
QOZS01000041
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60015 [QOZS]
4144
4055
-
Ser
CGA
[ENA]
¡û
>W2011649428
SNXM01000005
Alphaproteobacteria
Zavarzinia compransoris DSM 1231 [SNXM]
205141
205052
-
Ser
CGA
[ENA]
¡û
>W2012406696
WOSY01000004
Alphaproteobacteria
Acetobacter sp. LMG 1627 [WOSY]
351
262
-
Ser
CGA
[ENA]
¡û
>W2110136212
JAACKD010000002
Alphaproteobacteria
Gluconobacter kondonii GC1 [JAACKD]
355428
355339
-
Ser
CGA
[ENA]
¡û
>W2110171835
JABCQC010000004
Alphaproteobacteria
Gluconobacter sp. R75629 [JABCQC]
218868
218779
-
Ser
CGA
[ENA]
¡û
>W2110171880
JABCQD010000003
Alphaproteobacteria
Gluconobacter sp. R75628 [JABCQD]
218862
218773
-
Ser
CGA
[ENA]
¡û
>W2110171984
JABCQF010000004
Alphaproteobacteria
Gluconobacter potus R-71646 [JABCQF]
218898
218809
-
Ser
CGA
[ENA]
¡û
>W2110172134
JABCQI010000004
Alphaproteobacteria
Gluconobacter cadivus LMG 1744 [JABCQI]
182501
182412
-
Ser
CGA
[ENA]
¡û
>W2110172255
JABCQL010000001
Alphaproteobacteria
Gluconobacter oxydans LMG1408 [JABCQL]
217437
217348
-
Ser
CGA
[ENA]
¡û
>W2110172370
JABCQN010000003
Alphaproteobacteria
Gluconobacter japonicus R71697 [JABCQN]
70286
70375
+
Ser
CGA
[ENA]
¡û
>W2110172415
JABCQO010000003
Alphaproteobacteria
Gluconobacter cerevisiae LMG 27748 [JABCQO]
219145
219056
-
Ser
CGA
[ENA]
¡û
>W2110249523
JACRVT010000003
Alphaproteobacteria
Gluconobacter cerevisiae DSM 27644 [JACRVT]
111455
111544
+
Ser
CGA
[ENA]
¡û
>W2110249901
JACRWA010000007
Alphaproteobacteria
Gluconobacter sp. P5E12 [JACRWA]
46895
46806
-
Ser
CGA
[ENA]
¡û
>W2110443052
JAERLC010000013
Alphaproteobacteria
Gluconobacter cerinus Dm-3 [JAERLC]
4785
4696
-
Ser
CGA
[ENA]
¡û
>W2110443186
JAERLF010000003
Alphaproteobacteria
Gluconobacter cerinus Dm-77 [JAERLF]
435123
435034
-
Ser
CGA
[ENA]
¡û
>W2110443287
JAERLH010000004
Alphaproteobacteria
Gluconobacter cerinus Dm-79 [JAERLH]
374736
374647
-
Ser
CGA
[ENA]
¡û
>W2110443672
JAERLP010000004
Alphaproteobacteria
Gluconobacter japonicus Dm-27 [JAERLP]
63904
63993
+
Ser
CGA
[ENA]
¡û
>W2110443700
JAERLQ010000002
Alphaproteobacteria
Gluconobacter kondonii Dm-16 [JAERLQ]
67186
67275
+
Ser
CGA
[ENA]
¡û
>W2110443769
JAERLR010000014
Alphaproteobacteria
Gluconobacter kondonii Dm-18 [JAERLR]
64423
64512
+
Ser
CGA
[ENA]
¡û
>W2110443867
JAERLT010000010
Alphaproteobacteria
Gluconobacter kondonii Dm-54 [JAERLT]
2671
2582
-
Ser
CGA
[ENA]
¡û
>W2110443909
JAERLU010000010
Alphaproteobacteria
Gluconobacter kondonii Dm-68 [JAERLU]
23548
23459
-
Ser
CGA
[ENA]
¡û
>W2110443954
JAERLV010000013
Alphaproteobacteria
Gluconobacter kondonii Dm-42 [JAERLV]
8103
8014
-
Ser
CGA
[ENA]
¡û
>W2110443975
JAERLW010000002
Alphaproteobacteria
Gluconobacter sp. Dm-73 [JAERLW]
123784
123873
+
Ser
CGA
[ENA]
¡û
>W2110444067
JAERLY010000002
Alphaproteobacteria
Gluconobacter sp. Dm-62 [JAERLY]
82470
82559
+
Ser
CGA
[ENA]
¡û
>W2110444269
JAERMD010000001
Alphaproteobacteria
Gluconobacter wancherniae Dm-17 [JAERMD]
1275558
1275469
-
Ser
CGA
[ENA]
¡û
>W2110444328
JAERME010000003
Alphaproteobacteria
Gluconobacter wancherniae Dm-19 [JAERME]
73771
73860
+
Ser
CGA
[ENA]
¡û
>W2110444372
JAERMF010000003
Alphaproteobacteria
Gluconobacter wancherniae Dm-15 [JAERMF]
202264
202353
+
Ser
CGA
[ENA]
¡û
>W2110691877
JAIPVW010000003
Alphaproteobacteria
Gluconobacter oxydans NRRL B-58 [JAIPVW]
66869
66958
+
Ser
CGA
[ENA]
¡û
>C211247774
CP068419
Alphaproteobacteria
Gluconobacter sphaericus SJF2-1 [CP068419]
195761
195672
-
Ser
CGA
-
¡û
>C231293202
CP091241
Alphaproteobacteria
Hyphomonadaceae bacterium ML37 [CP091241]
2767204
2767115
-
Ser
CGA
-
¡û
>C241158820
CP053708
Alphaproteobacteria
Lichenicola cladoniae PAMC 26569 [CP053708]
2889692
2889603
-
Ser
CGA
-
¡û
>W2130027500
JAERLZ010000003
Alphaproteobacteria
Gluconobacter sp. Dm-44 [JAERLZ]
94748
94837
+
Ser
CGA
[ENA]
¡û
>W2310009231
BAQU01000034
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BAQU]
6399
6488
+
Ser
CGA
[ENA]
¡û
>W2310009399
BAQY01000011
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BAQY]
28256
28167
-
Ser
CGA
[ENA]
¡û
>W2310009597
BARC01000013
Alphaproteobacteria
Gluconobacter wancherniae NBRC 103581 [BARC]
99212
99123
-
Ser
CGA
[ENA]
¡û
>W1610624566
LHZN01000069
Alphaproteobacteria
Gluconobacter albidus [LHZN]
400
311
-
Ser
CGA
[ENA]
¡û
>W1610624778
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
181303
181214
-
Ser
CGA
[ENA]
¡û
>W1710624737
JOPF01000011
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
95870
95959
+
Ser
CGA
[ENA]
¡û
>W1710755394
LHZG01000170
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
863
774
-
Ser
CGA
[ENA]
¡û
>W1710755484
LHZI01001606
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
3609
3698
+
Ser
CGA
[ENA]
¡û
>W1710755526
LHZJ01000080
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
71512
71423
-
Ser
CGA
[ENA]
¡û
>W1710755582
LHZK01000128
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
70240
70329
+
Ser
CGA
[ENA]
¡û
>W1710755684
LHZN01000069
Alphaproteobacteria
Gluconobacter albidus [LHZN]
400
311
-
Ser
CGA
[ENA]
¡û
>W1710755896
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
181303
181214
-
Ser
CGA
[ENA]
¡û
>W1710755932
LHZS01000097
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
32878
32789
-
Ser
CGA
[ENA]
¡û
>W1710756106
LHZW01000052
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
61079
61168
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK