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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.33052 (50 seq.)
>W131109476
APHV01000303
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
86699
86610
-
Ser
CGA
[ENA]
¡û
>WENV180020246
FTCZ01000533
[FTCZ] metagenome; soil
1273
1184
-
Ser
CGA
[ENA]
¡û
>C181063141
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
2185384
2185473
+
Ser
CGA
-
¡û
>C181177435
CP029353
Alphaproteobacteria
Azospirillum thermophilum CFH 70021 [CP029352, CP029353, CP029354, CP029355]
1892873
1892784
-
Ser
CGA
-
¡û
>C181185949
CP029829
Alphaproteobacteria
Azospirillum ramasamyi M2T2B2 [CP029829]
1901786
1901697
-
Ser
CGA
-
¡û
>W141520240
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
764119
764208
+
Ser
CGA
[ENA]
¡û
>C191088041
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
1236943
1236854
-
Ser
CGA
-
¡û
>C191088088
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
1078798
1078709
-
Ser
CGA
-
¡û
>W1910612847
LGQS01000028
Alphaproteobacteria
Azospirillum sp. TSA6c [LGQS]
2545874
2545963
+
Ser
CGA
[ENA]
¡û
>W1910613068
LGQV01000104
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
13131
13042
-
Ser
CGA
[ENA]
¡û
>W1910613296
LGQZ01000099
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
30898
30809
-
Ser
CGA
[ENA]
¡û
>W1910613326
LGRA01000008
Alphaproteobacteria
Azospirillum sp. TSO35-2 [LGRA]
263477
263388
-
Ser
CGA
[ENA]
¡û
>W1910613400
LGRK01000032
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
100894
100983
+
Ser
CGA
[ENA]
¡û
>W1911138072
NOWT01000002
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
212333
212422
+
Ser
CGA
[ENA]
¡û
>W1911768800
QXHE01000134
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
3442
3353
-
Ser
CGA
[ENA]
¡û
>W1810222232
POQV01000002
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
268783
268694
-
Ser
CGA
[ENA]
¡û
>W1810223517
POTD01000002
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
268717
268628
-
Ser
CGA
[ENA]
¡û
>W1810226076
POWG01000003
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
203432
203343
-
Ser
CGA
[ENA]
¡û
>W1810692561
QLKQ01000008
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
80460
80371
-
Ser
CGA
[ENA]
¡û
>W2010772670
LGQV01000104
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
13131
13042
-
Ser
CGA
[ENA]
¡û
>W2010772898
LGQZ01000099
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
30898
30809
-
Ser
CGA
[ENA]
¡û
>W2011014314
NOWT01000002
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
212333
212422
+
Ser
CGA
[ENA]
¡û
>W2011326279
QXHE01000134
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
3442
3353
-
Ser
CGA
[ENA]
¡û
>W2012042630
VISK01000018
Alphaproteobacteria
Azospirillum brasilense Sp 7 [VISK]
294489
294578
+
Ser
CGA
[ENA]
¡û
>W2012043603
VITE01000003
Alphaproteobacteria
Azospirillum brasilense BR 12001 [VITE]
176058
175969
-
Ser
CGA
[ENA]
¡û
>W2012043677
VITF01000003
Alphaproteobacteria
Azospirillum brasilense BR 11796 [VITF]
274939
274850
-
Ser
CGA
[ENA]
¡û
>W2012043763
VITG01000005
Alphaproteobacteria
Azospirillum brasilense BR 11005 [VITG]
176152
176063
-
Ser
CGA
[ENA]
¡û
>W2012043810
VITH01000002
Alphaproteobacteria
Azospirillum brasilense BR 11650 [VITH]
335332
335421
+
Ser
CGA
[ENA]
¡û
>W2012044670
VITX01000002
Alphaproteobacteria
Azospirillum brasilense BR 11002 [VITX]
502638
502549
-
Ser
CGA
[ENA]
¡û
>W2012324504
WFKD01000198
Alphaproteobacteria
Azospirillum brasilense BR11649 [WFKD]
3427
3338
-
Ser
CGA
[ENA]
¡û
>W2012329142
WHOR01000301
Alphaproteobacteria
Azospirillum formosense CC-NFb-7 [WHOR]
3378
3289
-
Ser
CGA
[ENA]
¡û
>W2110176558
JABEXZ010000001
Alphaproteobacteria
Azospirillum formosense Nfb7 [JABEXZ]
611576
611665
+
Ser
CGA
[ENA]
¡û
>W2110371661
JADPXF010000187
Alphaproteobacteria
Azospirillum brasilense D7 [JADPXF]
3039
3128
+
Ser
CGA
[ENA]
¡û
>W2110432705
JAENHM010000059
Alphaproteobacteria
Azospirillum sp. YIM B02556 [JAENHM]
84220
84309
+
Ser
CGA
[ENA]
¡û
>W2110438121
JAEPIV010000003
Alphaproteobacteria
Azospirillum sp. YIM DDC1 [JAEPIV]
90681
90592
-
Ser
CGA
[ENA]
¡û
>W2110503621
JAFIQV010000046
Alphaproteobacteria
Azospirillum sp. SYSU D00513 [JAFIQV]
4509
4598
+
Ser
CGA
[ENA]
¡û
>W2110552796
JAGINO010000009
Alphaproteobacteria
Azospirillum picis IMMIB TAR-3 [JAGINO]
54078
53989
-
Ser
CGA
[ENA]
¡û
>W2110552890
JAGINP010000020
Alphaproteobacteria
Azospirillum rugosum IMMIB AFH-6 [JAGINP]
154760
154849
+
Ser
CGA
[ENA]
¡û
>W2110552958
JAGINQ010000016
Alphaproteobacteria
Azospirillum soli CC-LY788 [JAGINQ]
103691
103780
+
Ser
CGA
[ENA]
¡û
>C231082791
CP059449
Alphaproteobacteria
Azospirillum brasilense 2020WEIHUA_K [CP059449]
497278
497189
-
Ser
CGA
-
¡û
>W2110766773
RWIJ01000001
Alphaproteobacteria
Azospirillum sp. 412522 [RWIJ]
291857
291946
+
Ser
CGA
[ENA]
¡û
>W2110778451
VUOI01000047
Alphaproteobacteria
Azospirillum sp. INR13 [VUOI]
4547
4458
-
Ser
CGA
[ENA]
¡û
>C241038960
CP033312
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP033312, CP033313, CP033314, CP033316]
922450
922539
+
Ser
CGA
-
¡û
>C241039030
CP033318
Alphaproteobacteria
Azospirillum brasilense Cd [CP033318, CP033319, CP033320, CP033322]
920422
920511
+
Ser
CGA
-
¡û
>W2110781491
WFKC01000306
Alphaproteobacteria
Azospirillum brasilense BR11138 [WFKC]
3394
3305
-
Ser
CGA
[ENA]
¡û
>W2110781556
WFKE01000136
Alphaproteobacteria
Azospirillum brasilense BR11669 [WFKE]
13952
14041
+
Ser
CGA
[ENA]
¡û
>W2110781607
WFKF01000055
Alphaproteobacteria
Azospirillum brasilense BR11975 [WFKF]
28946
28857
-
Ser
CGA
[ENA]
¡û
>C121017695
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
864668
864757
+
Ser
CGA
[Ensembl]
¡û
>C161047374
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
2521626
2521537
-
Ser
CGA
[Ensembl]
¡û
>W1710626770
JPIS01000049
Alphaproteobacteria
Azospirillum brasilense [JPIS]
68456
68545
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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