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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.330617 (56 seq.)
>W1710872659
LMMD01000015
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
207999
208074
+
Glu
TTC
[ENA]
¡û
>W1710874204
LMNK01000002
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
975298
975223
-
Glu
TTC
[ENA]
¡û
>W1711125331
LUNF01000020
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
12455
12530
+
Glu
TTC
[ENA]
¡û
>W1711125374
LUNG01000010
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
36897
36972
+
Glu
TTC
[ENA]
¡û
>W1711125439
LUNH01000025
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
77207
77132
-
Glu
TTC
[ENA]
¡û
>W1711125481
LUNI01000014
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
36313
36388
+
Glu
TTC
[ENA]
¡û
>W1711183464
LWLB01000001
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
453666
453591
-
Glu
TTC
[ENA]
¡û
>W1711346033
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
5571299
5571374
+
Glu
TTC
[ENA]
¡û
>C171115995
CP021121
Actinomycetota
Streptomyces marincola SCSIO 03032 [CP021121]
3433307
3433234
-
Glu
TTC
-
¡û
>W131165639
ARBS01000016
Actinomycetota
Longispora albida DSM 44784 [ARBS]
105719
105646
-
Glu
TTC
[ENA]
¡û
>W131053482
ANAC01000011
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
379216
379291
+
Glu
TTC
[ENA]
¡û
>W131053569
ANAE01000077
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
55792
55867
+
Glu
TTC
[ENA]
¡û
>W131054739
ANAZ01000002
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
320753
320678
-
Glu
TTC
[ENA]
¡û
>W131054804
ANBA01000011
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
54884
54809
-
Glu
TTC
[ENA]
¡û
>W131054947
ANBC01000798
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
9337
9412
+
Glu
TTC
[ENA]
¡û
>W131179386
ARMI01000058
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
80945
81020
+
Glu
TTC
[ENA]
¡û
>C021624
AM420293
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [AM420293]
7840776
7840704
-
Glu
TTC
[Ensembl]
¡û
>WENV180639162
OCRI01165674
[OCRI] marine metagenome; Sterile flask
179
252
+
Glu
TTC
[ENA]
¢þ
>WENV181634790
OGMW01021757
[OGMW] metagenome; Human gut stool
760
687
-
Glu
TTC
[ENA]
¢þ
>W141185563
AYJW01000001
Actinomycetota
Saccharopolyspora rectivirgula DSM 43747 [AYJW]
141868
141793
-
Glu
TTC
[ENA]
¡û
>W141219657
AZXF01000005
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
317036
316961
-
Glu
TTC
[ENA]
¡û
>W141236324
BAZE01000003
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
432081
432006
-
Glu
TTC
[ENA]
¡û
>WENV170729590
LULG01000003
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
77207
77132
-
Glu
TTC
[ENA]
¢þ
>WENV170732448
LULJ01000003
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
36897
36972
+
Glu
TTC
[ENA]
¢þ
>WENV170736182
LULM01000036
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
12455
12530
+
Glu
TTC
[ENA]
¢þ
>WENV170758903
LUMS01000259
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
19448
19373
-
Glu
TTC
[ENA]
¢þ
>WENV170759574
LUMT01000015
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
36313
36388
+
Glu
TTC
[ENA]
¢þ
>WENV170761977
LUMW01000274
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
12320
12395
+
Glu
TTC
[ENA]
¢þ
>C191212913
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
3658289
3658216
-
Glu
TTC
-
¡û
>W141758812
JNYW01001722
Actinomycetota
Saccharopolyspora phatthalungensis [JNYW]
332
259
-
Glu
TTC
[ENA]
¡û
>W1911572296
PDBV01000001
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 DSM 40517 [PDBV]
8174
8101
-
Glu
TTC
[ENA]
¡û
>W1810046836
NYMS01000016
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
147995
147922
-
Glu
TTC
[ENA]
¡û
>W1810173483
PJNB01000001
Actinomycetota
Saccharopolyspora spinosa DSM 44228 [PJNB]
573163
573090
-
Glu
TTC
[ENA]
¡û
>W1810608308
QGTF01000007
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
7983
8056
+
Glu
TTC
[ENA]
¡û
>W10111544
ADDL01000020
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
97589
97662
+
Glu
TTC
[ENA]
¡û
>W1510060964
CCXT01000274
Actinomycetota
Candidatus Streptomyces massiliensis massiliensis AP10 [CCXT]
1727
1652
-
Glu
TTC
[ENA]
¡û
>C11109212
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
8606745
8606818
+
Glu
TTC
[Ensembl]
¡û
>W11114471
ADDL01000020
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
97589
97662
+
Glu
TTC
[ENA]
¡û
>W1511584566
LAVM01000041
Actinomycetota
Nocardiopsis sp. SBT366 [LAVM]
60705
60780
+
Glu
TTC
[ENA]
¡û
>W11152484
AEYC01000068
Actinomycetota
Saccharopolyspora spinosa NRRL 18395 [AEYC]
29550
29625
+
Glu
TTC
[ENA]
¡û
>W1511697698
LGEC01000079
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
34504
34431
-
Glu
TTC
[ENA]
¡û
>C161036412
CP011502
Actinomycetota
Aeromicrobium erythreum AR18 [CP011502]
564157
564082
-
Glu
TTC
[Ensembl]
¡û
>W1610069230
BCSH01000066
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
19683
19608
-
Glu
TTC
[ENA]
¡û
>W1610165027
FAXE01000120
Actinomycetota
Streptomyces specialis [FAXE]
876
951
+
Glu
TTC
[ENA]
¡û
>C131006713
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
2513350
2513425
+
Glu
TTC
[Ensembl]
¡û
>W1610735005
LMMD01000015
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
207999
208074
+
Glu
TTC
[ENA]
¡û
>W1610736550
LMNK01000002
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
975298
975223
-
Glu
TTC
[ENA]
¡û
>W1610936264
LUNF01000020
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
12455
12530
+
Glu
TTC
[ENA]
¡û
>W1610936307
LUNG01000010
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
36897
36972
+
Glu
TTC
[ENA]
¡û
>W1610936372
LUNH01000025
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
77207
77132
-
Glu
TTC
[ENA]
¡û
>W1610936414
LUNI01000014
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
36313
36388
+
Glu
TTC
[ENA]
¡û
>W1710066603
BCSH01000066
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
19683
19608
-
Glu
TTC
[ENA]
¡û
>W1710166643
FAXE01000120
Actinomycetota
Streptomyces specialis [FAXE]
876
951
+
Glu
TTC
[ENA]
¡û
>W1710529991
FNOK01000025
Actinomycetota
Saccharopolyspora shandongensis [FNOK]
35852
35927
+
Glu
TTC
[ENA]
¡û
>W1710576260
FOZX01000001
Actinomycetota
Saccharopolyspora flava [FOZX]
1427445
1427370
-
Glu
TTC
[ENA]
¡û
>W1710588514
FQZK01000012
Actinomycetota
Nocardiopsis flavescens [FQZK]
69024
69099
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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