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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.33222 (101 seq.)
>W1710823560
LLCL01000029
Gammaproteobacteria
Acinetobacter pittii [LLCL]
45886
45975
+
Ser
GGA
[ENA]
¡û
>W1710824365
LLCW01000027
Gammaproteobacteria
Acinetobacter pittii [LLCW]
4353
4442
+
Ser
GGA
[ENA]
¡û
>W1710825391
LLDL01000077
Gammaproteobacteria
Acinetobacter pittii [LLDL]
235388
235477
+
Ser
GGA
[ENA]
¡û
>W1710826139
LLDW01000308
Gammaproteobacteria
Acinetobacter pittii [LLDW]
45783
45872
+
Ser
GGA
[ENA]
¡û
>W1710827990
LLFJ01000526
Gammaproteobacteria
Acinetobacter pittii [LLFJ]
5328
5239
-
Ser
GGA
[ENA]
¡û
>W1710829380
LLGE01000167
Gammaproteobacteria
Acinetobacter pittii [LLGE]
24211
24122
-
Ser
GGA
[ENA]
¡û
>W1710829659
LLGI01000281
Gammaproteobacteria
Acinetobacter pittii [LLGI]
16545
16634
+
Ser
GGA
[ENA]
¡û
>W1710830846
LLGZ01000295
Gammaproteobacteria
Acinetobacter lactucae pittii [LLGZ]
3462
3373
-
Ser
GGA
[ENA]
¡û
>W1711004841
LQMV01000005
Gammaproteobacteria
Acinetobacter calcoaceticus [LQMV]
43593
43682
+
Ser
GGA
[ENA]
¡û
>W1711064446
LSAM01000043
Gammaproteobacteria
Acinetobacter pittii [LSAM]
248754
248665
-
Ser
GGA
[ENA]
¡û
>W1711088978
LSZG01000040
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
147281
147192
-
Ser
GGA
[ENA]
¡û
>W1711357898
MDHQ01000066
Gammaproteobacteria
Acinetobacter pittii [MDHQ]
123665
123754
+
Ser
GGA
[ENA]
¡û
>W1711357965
MDHR01000052
Gammaproteobacteria
Acinetobacter pittii [MDHR]
55880
55791
-
Ser
GGA
[ENA]
¡û
>W1711358185
MDHV01000090
Gammaproteobacteria
Acinetobacter pittii [MDHV]
34057
34146
+
Ser
GGA
[ENA]
¡û
>W1711358411
MDIA01000033
Gammaproteobacteria
Acinetobacter pittii [MDIA]
45707
45796
+
Ser
GGA
[ENA]
¡û
>W1711358581
MDID01000193
Gammaproteobacteria
Acinetobacter pittii [MDID]
7126
7037
-
Ser
GGA
[ENA]
¡û
>W1711358600
MDIE01000026
Gammaproteobacteria
Acinetobacter pittii [MDIE]
32555
32466
-
Ser
GGA
[ENA]
¡û
>W1711358718
MDIG01000003
Gammaproteobacteria
Acinetobacter pittii [MDIG]
121617
121706
+
Ser
GGA
[ENA]
¡û
>W1711358947
MDIJ01000125
Gammaproteobacteria
Acinetobacter pittii [MDIJ]
122578
122667
+
Ser
GGA
[ENA]
¡û
>W1711359160
MDIN01000077
Gammaproteobacteria
Acinetobacter pittii [MDIN]
80848
80937
+
Ser
GGA
[ENA]
¡û
>W1711359244
MDIP01000024
Gammaproteobacteria
Acinetobacter pittii [MDIP]
80846
80935
+
Ser
GGA
[ENA]
¡û
>W1711359358
MDIR01000103
Gammaproteobacteria
Acinetobacter pittii [MDIR]
4019
3930
-
Ser
GGA
[ENA]
¡û
>W1711359631
MDIW01000097
Gammaproteobacteria
Acinetobacter pittii [MDIW]
121476
121565
+
Ser
GGA
[ENA]
¡û
>W1711492402
MKKJ01000001
Gammaproteobacteria
Acinetobacter proteolyticus [MKKJ]
233837
233925
+
Ser
GGA
[ENA]
¡û
>W1711501423
MKRP01001370
Gammaproteobacteria
Acinetobacter sp. 39-4 [MKRP]
713
624
-
Ser
GGA
[ENA]
¡û
>W1712003231
NEGC01000001
Gammaproteobacteria
Acinetobacter sp. ANC 4470 [NEGC]
499273
499362
+
Ser
GGA
[ENA]
¡û
>W1712003897
NEGL01000004
Gammaproteobacteria
Acinetobacter sp. ANC 4654 [NEGL]
50551
50640
+
Ser
GGA
[ENA]
¡û
>W1712003958
NEGM01000003
Gammaproteobacteria
Acinetobacter sp. ANC 4973 [NEGM]
4757
4846
+
Ser
GGA
[ENA]
¡û
>W1712058147
NGCX01000016
Gammaproteobacteria
Acinetobacter pittii [NGCX]
34946
34857
-
Ser
GGA
[ENA]
¡û
>W1712062630
NGGG01000145
Gammaproteobacteria
Acinetobacter pittii [NGGG]
34947
34858
-
Ser
GGA
[ENA]
¡û
>W1712063477
NGGW01000042
Gammaproteobacteria
Acinetobacter pittii [NGGW]
163883
163794
-
Ser
GGA
[ENA]
¡û
>W1712064603
NGHS01000053
Gammaproteobacteria
Acinetobacter pittii [NGHS]
9114
9025
-
Ser
GGA
[ENA]
¡û
>W1712064656
NGHT01000056
Gammaproteobacteria
Acinetobacter pittii [NGHT]
121112
121023
-
Ser
GGA
[ENA]
¡û
>W1712065850
NGIQ01000009
Gammaproteobacteria
Acinetobacter pittii [NGIQ]
25065
24976
-
Ser
GGA
[ENA]
¡û
>W1712065989
NGIS01000062
Gammaproteobacteria
Acinetobacter pittii [NGIS]
45582
45671
+
Ser
GGA
[ENA]
¡û
>W1712066218
NGIX01000006
Gammaproteobacteria
Acinetobacter pittii [NGIX]
233607
233518
-
Ser
GGA
[ENA]
¡û
>W1712084637
NHRQ01000003
Gammaproteobacteria
Acinetobacter sp. WCHA29 [NHRQ]
155898
155809
-
Ser
GGA
[ENA]
¡û
>W131041745
AMIX01000015
Gammaproteobacteria
Acinetobacter calcoaceticus TG19588 [AMIX]
237401
237490
+
Ser
GGA
[ENA]
¡û
>W131046876
AMSS01000066
Gammaproteobacteria
Acinetobacter sp. WC-141 WC-141 [AMSS]
3424
3335
-
Ser
GGA
[ENA]
¡û
>W131046937
AMST01000045
Gammaproteobacteria
Acinetobacter pittii WC-136 [AMST]
213171
213260
+
Ser
GGA
[ENA]
¡û
>W131051101
AMXH01000041
Gammaproteobacteria
Acinetobacter pittii subsp. anitratus XM1570 [AMXH]
150169
150258
+
Ser
GGA
[ENA]
¡û
>W131112828
APOH01000009
Gammaproteobacteria
Acinetobacter bohemicus ANC 3994 [APOH]
191882
191971
+
Ser
GGA
[ENA]
¡û
>W131113106
APOK01000044
Gammaproteobacteria
Acinetobacter sp. CIP-A165 [APOK]
233251
233340
+
Ser
GGA
[ENA]
¡û
>W131114463
APPF01000016
Gammaproteobacteria
Acinetobacter sp. NIPH 817 [APPF]
162014
162103
+
Ser
GGA
[ENA]
¡û
>W131116583
APQJ01000013
Gammaproteobacteria
Acinetobacter calcoaceticus ANC 3811 [APQJ]
231107
231018
-
Ser
GGA
[ENA]
¡û
>W131116823
APQN01000009
Gammaproteobacteria
Acinetobacter pittii ANC 3678 [APQN]
141829
141740
-
Ser
GGA
[ENA]
¡û
>W131116877
APQO01000004
Gammaproteobacteria
Acinetobacter lactucae ANC 4052 [APQO]
270681
270770
+
Ser
GGA
[ENA]
¡û
>W131118554
APRM01000005
Gammaproteobacteria
Acinetobacter sp. NIPH 298 [APRM]
235502
235591
+
Ser
GGA
[ENA]
¡û
>W131118818
APRP01000034
Gammaproteobacteria
Acinetobacter modestus ANC 3862 [APRP]
11254
11165
-
Ser
GGA
[ENA]
¡û
>W131119717
APSC01000003
Gammaproteobacteria
Acinetobacter sp. NIPH 542 [APSC]
235358
235269
-
Ser
GGA
[ENA]
¡û
>W131170867
ARFU01000038
Gammaproteobacteria
Acinetobacter tjernbergiae DSM 14971 = CIP 107465 [ARFU]
100442
100531
+
Ser
GGA
[ENA]
¡û
>C171102582
CP020000
Gammaproteobacteria
Acinetobacter calcoaceticus CA16 [CP020000]
3786291
3786380
+
Ser
GGA
-
¡û
>C171110184
CP020588
Gammaproteobacteria
Acinetobacter nosocomialis SSA3 [CP020588]
395544
395455
-
Ser
GGA
-
¡û
>C171118870
CP021428
Gammaproteobacteria
Acinetobacter pittii HUMV-6483 [CP021428]
1049769
1049858
+
Ser
GGA
-
¡û
>WENV180439691
OBWT01003506
[OBWT] human gut metagenome; faeces
46
135
+
Ser
GGA
[ENA]
¢þ
>W141104327
AVOE01000037
Gammaproteobacteria
Acinetobacter lactucae CI78 [AVOE]
124006
124095
+
Ser
GGA
[ENA]
¡û
>WENV181379512
OFRD01002505
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2817
2906
+
Ser
GGA
[ENA]
¢þ
>W141444886
JEXS01000009
Gammaproteobacteria
Acinetobacter sp. 907131 907131 [JEXS]
51573
51484
-
Ser
GGA
[ENA]
¡û
>W141454310
JFDA01000006
Gammaproteobacteria
Acinetobacter sp. 263903-2 263903-2 [JFDA]
193887
193976
+
Ser
GGA
[ENA]
¡û
>W141456378
JFDY01000060
Gammaproteobacteria
Acinetobacter sp. 1245249 1245249 [JFDY]
805
716
-
Ser
GGA
[ENA]
¡û
>W141457558
JFEL02000001
Gammaproteobacteria
Acinetobacter sp. 1564232 1564232 [JFEL]
589380
589291
-
Ser
GGA
[ENA]
¡û
>WENV170966258
MTEX01005543
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
3150
3061
-
Ser
GGA
[ENA]
¢þ
>W141481379
JFXG01000029
Gammaproteobacteria
Acinetobacter sp. 1294243 1294243 [JFXG]
18464
18553
+
Ser
GGA
[ENA]
¡û
>C181127634
CP026089
Gammaproteobacteria
Acinetobacter pittii WCHAP005069 [CP026089]
332547
332458
-
Ser
GGA
-
¡û
>C191064981
CP029610
Gammaproteobacteria
Acinetobacter pittii ST220 [CP029610]
274601
274512
-
Ser
GGA
-
¡û
>C191107082
CP033520
Gammaproteobacteria
Acinetobacter pittii 2012N08-034 [CP033520]
271586
271497
-
Ser
GGA
-
¡û
>W141704841
JMNG01000007
Gammaproteobacteria
Acinetobacter sp. 1264765 1264765 [JMNG]
128899
128988
+
Ser
GGA
[ENA]
¡û
>W141817866
JQLC01000005
Gammaproteobacteria
Acinetobacter pittii calcoaceticus [JQLC]
17009
16920
-
Ser
GGA
[ENA]
¡û
>W1911159463
NPMK01000109
Gammaproteobacteria
Acinetobacter sp. BS1 [NPMK]
235779
235868
+
Ser
GGA
[ENA]
¡û
>W1911191021
NQXF01000006
Gammaproteobacteria
Acinetobacter pittii MCR53 [NQXF]
235583
235672
+
Ser
GGA
[ENA]
¡û
>W1911629653
PSSN01000005
Gammaproteobacteria
Acinetobacter sp. KU 011TH [PSSN]
174136
174047
-
Ser
GGA
[ENA]
¡û
>W1911629716
PSSO01000005
Gammaproteobacteria
Acinetobacter sp. KU 013TH [PSSO]
174136
174047
-
Ser
GGA
[ENA]
¡û
>W1810043733
BHFZ01000028
Gammaproteobacteria
Acinetobacter pittii OCU_Ac3 [BHFZ]
5231
5142
-
Ser
GGA
[ENA]
¡û
>W1810043818
BHGB01000001
Gammaproteobacteria
Acinetobacter pittii OCU_Ac5 [BHGB]
150378
150467
+
Ser
GGA
[ENA]
¡û
>W1810044264
BHGI01000033
Gammaproteobacteria
Acinetobacter pittii OCU_Ac12 [BHGI]
123751
123840
+
Ser
GGA
[ENA]
¡û
>W1810487357
QAYN01000006
Gammaproteobacteria
Acinetobacter oleivorans KCJK7897 [QAYN]
250916
250827
-
Ser
GGA
[ENA]
¡û
>W1810592881
QFXW01000001
Gammaproteobacteria
Acinetobacter pittii 2012N08-034 [QFXW]
271586
271497
-
Ser
GGA
[ENA]
¡û
>W1810592947
QFXX01000001
Gammaproteobacteria
Acinetobacter pittii 2014N05-125 [QFXX]
294336
294247
-
Ser
GGA
[ENA]
¡û
>W1810593017
QFXY01000001
Gammaproteobacteria
Acinetobacter pittii 2014S07-126 [QFXY]
326732
326643
-
Ser
GGA
[ENA]
¡û
>C151096134
CP012608
Gammaproteobacteria
Acinetobacter sp. TTH0-4 [CP012608]
1929102
1929013
-
Ser
GGA
-
¡û
>W1510017588
BBTM01000005
Gammaproteobacteria
Acinetobacter calcoaceticus KCTC 2357 [BBTM]
237304
237393
+
Ser
GGA
[ENA]
¡û
>W1511037970
JHQK01000003
Gammaproteobacteria
Acinetobacter oleivorans PF1 [JHQK]
254420
254509
+
Ser
GGA
[ENA]
¡û
>W1511460265
JVLG01000169
Gammaproteobacteria
Acinetobacter pittii 332_ABCC [JVLG]
18506
18595
+
Ser
GGA
[ENA]
¡û
>W1511526619
JYGV01000023
Gammaproteobacteria
Acinetobacter calcoaceticus GK1 [JYGV]
61107
61196
+
Ser
GGA
[ENA]
¡û
>W11163749
AFIE01000025
Gammaproteobacteria
Acinetobacter sp. P8-3-8 [AFIE]
24144
24056
-
Ser
GGA
[ENA]
¡û
>C161083298
CP015110
Gammaproteobacteria
Acinetobacter sp. TGL-Y2 [CP015110]
3109777
3109866
+
Ser
GGA
[Ensembl]
¡û
>W1610462142
FKLP01000114
Gammaproteobacteria
Acinetobacter pittii [FKLP]
81839
81928
+
Ser
GGA
[ENA]
¡û
>W1610686836
LLCL01000029
Gammaproteobacteria
Acinetobacter pittii [LLCL]
45886
45975
+
Ser
GGA
[ENA]
¡û
>W1610687641
LLCW01000027
Gammaproteobacteria
Acinetobacter pittii [LLCW]
4353
4442
+
Ser
GGA
[ENA]
¡û
>W1610688667
LLDL01000077
Gammaproteobacteria
Acinetobacter pittii [LLDL]
235388
235477
+
Ser
GGA
[ENA]
¡û
>W1610689415
LLDW01000308
Gammaproteobacteria
Acinetobacter pittii [LLDW]
45783
45872
+
Ser
GGA
[ENA]
¡û
>W1610691267
LLFJ01000526
Gammaproteobacteria
Acinetobacter pittii [LLFJ]
5328
5239
-
Ser
GGA
[ENA]
¡û
>W1610692657
LLGE01000167
Gammaproteobacteria
Acinetobacter pittii [LLGE]
24211
24122
-
Ser
GGA
[ENA]
¡û
>W1610692936
LLGI01000281
Gammaproteobacteria
Acinetobacter pittii [LLGI]
16545
16634
+
Ser
GGA
[ENA]
¡û
>W1610694123
LLGZ01000295
Gammaproteobacteria
Acinetobacter lactucae pittii [LLGZ]
3462
3373
-
Ser
GGA
[ENA]
¡û
>W1610855461
LQMV01000005
Gammaproteobacteria
Acinetobacter calcoaceticus [LQMV]
43593
43682
+
Ser
GGA
[ENA]
¡û
>W1610923356
LSZG01000040
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
147281
147192
-
Ser
GGA
[ENA]
¡û
>W1710461312
FKLP01000114
Gammaproteobacteria
Acinetobacter pittii [FKLP]
81839
81928
+
Ser
GGA
[ENA]
¡û
>W1710531255
FNPK01000009
Gammaproteobacteria
Acinetobacter kyonggiensis [FNPK]
37215
37304
+
Ser
GGA
[ENA]
¡û
>W1710731463
LFZQ01000009
Gammaproteobacteria
Acinetobacter genomosp. 33YU [LFZQ]
243758
243847
+
Ser
GGA
[ENA]
¡û
>W1710731578
LFZS01000003
Gammaproteobacteria
Acinetobacter genomosp. 33YU [LFZS]
261321
261232
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK