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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.332422 (87 seq.)
>W1711093385
LTEY01000015
Actinomycetota
Kocuria sp. HMSC066H03 [LTEY]
44051
43978
-
Ala
GGC
[ENA]
¡û
>W131158426
AQUB01000004
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
7574
7647
+
Ala
GGC
[ENA]
¡û
>W131162577
AQYZ01000008
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
5354
5427
+
Ala
GGC
[ENA]
¡û
>W131162926
AQZI01000001
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
245545
245618
+
Ala
GGC
[ENA]
¡û
>W1711281812
LZMM01000038
Actinomycetota
Kocuria sp. ICS0012 [LZMM]
31598
31673
+
Ala
GGC
[ENA]
¡û
>W131230361
AUHN01000010
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
241708
241635
-
Ala
GGC
[ENA]
¡û
>WENV180110492
OAPN01000109
[OAPN] marine metagenome; 2011
1
74
+
Ala
GGC
[ENA]
¢þ
>WENV180110505
OAPN01000257
[OAPN] marine metagenome; 2011
480
407
-
Ala
GGC
[ENA]
¢þ
>WENV180377107
OBON01000452
[OBON] marine metagenome; sea water
1022
949
-
Ala
GGC
[ENA]
¢þ
>WENV180592264
OCOV01250167
[OCOV] marine metagenome; ENVO:01000301
55
128
+
Ala
GGC
[ENA]
¢þ
>WENV017438
AACY020484530
Marine microbial communities from Global Ocean Sampling (GOS)
680
755
+
Ala
GGC
[ENA]
>WENV017503
AACY020485809
Marine microbial communities from Global Ocean Sampling (GOS)
1120
1195
+
Ala
GGC
[ENA]
>WENV181367449
OFQB01001844
[OFQB] freshwater metagenome; Freshwater Lake
186
113
-
Ala
GGC
[ENA]
¢þ
>WENV181368236
OFQK01007538
[OFQK] freshwater metagenome; Freshwater Lake
270
197
-
Ala
GGC
[ENA]
¢þ
>WENV181368395
OFQL01002208
[OFQL] freshwater metagenome; Freshwater Lake
303
230
-
Ala
GGC
[ENA]
¢þ
>WENV181368884
OFQN01002586
[OFQN] freshwater metagenome; Freshwater Lake
664
737
+
Ala
GGC
[ENA]
¢þ
>WENV181369539
OFQP01006989
[OFQP] freshwater metagenome; Freshwater Lake
181
108
-
Ala
GGC
[ENA]
¢þ
>WENV181369916
OFQR01002362
[OFQR] freshwater metagenome; Freshwater Lake
486
413
-
Ala
GGC
[ENA]
¢þ
>WENV181370232
OFQS01000962
[OFQS] freshwater metagenome; Freshwater Lake
1204
1131
-
Ala
GGC
[ENA]
¢þ
>WENV181379583
OFRD01003377
[OFRD] wastewater metagenome; Exp Tend CN 100WW
4058
4131
+
Ala
GGC
[ENA]
¢þ
>WENV181386117
OFRL01000701
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
8723
8650
-
Ala
GGC
[ENA]
¢þ
>WENV181395770
OFSB01002174
[OFSB] freshwater metagenome; Freshwater Lake
510
583
+
Ala
GGC
[ENA]
¢þ
>WENV181400320
OFSF01004465
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1722
1795
+
Ala
GGC
[ENA]
¢þ
>WENV181836301
OGVJ01003968
[OGVJ] freshwater metagenome; freshwater
732
659
-
Ala
GGC
[ENA]
¢þ
>WENV181842689
OGVT01011508
[OGVT] freshwater metagenome; freshwater
301
228
-
Ala
GGC
[ENA]
¢þ
>WENV181845653
OGVX01005768
[OGVX] freshwater metagenome; freshwater
615
688
+
Ala
GGC
[ENA]
¢þ
>WENV181846137
OGVX01022522
[OGVX] freshwater metagenome; freshwater
741
668
-
Ala
GGC
[ENA]
¢þ
>WENV181848731
OGVZ01020876
[OGVZ] freshwater metagenome; freshwater
140
213
+
Ala
GGC
[ENA]
¢þ
>WENV181849078
OGVZ01050273
[OGVZ] freshwater metagenome; freshwater
572
499
-
Ala
GGC
[ENA]
¢þ
>WENV181849217
OGVZ01066712
[OGVZ] freshwater metagenome; freshwater
76
149
+
Ala
GGC
[ENA]
¢þ
>WENV181851472
OGWE01038557
[OGWE] freshwater metagenome; freshwater
189
116
-
Ala
GGC
[ENA]
¢þ
>WENV181853379
OGWI01003164
[OGWI] freshwater metagenome; freshwater
1479
1552
+
Ala
GGC
[ENA]
¢þ
>WENV181853977
OGWJ01003306
[OGWJ] freshwater metagenome; freshwater
126
53
-
Ala
GGC
[ENA]
¢þ
>WENV181854321
OGWK01000243
[OGWK] freshwater metagenome; freshwater
5500
5427
-
Ala
GGC
[ENA]
¢þ
>WENV181855272
OGWL01004549
[OGWL] freshwater metagenome; freshwater
443
370
-
Ala
GGC
[ENA]
¢þ
>W141202925
AZHS01000004
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
52969
53042
+
Ala
GGC
[ENA]
¡û
>C08005757
AP009152
Actinomycetota
Kocuria rhizophila DC2201 [AP009152]
1255631
1255706
+
Ala
GGC
[Ensembl]
¡û
>WENV170602687
FUWD010253823
[FUWD] metagenome; unknown
167
240
+
Ala
GGC
[ENA]
¢þ
>WENV170606053
FUWD010596107
[FUWD] metagenome; unknown
228
155
-
Ala
GGC
[ENA]
¢þ
>WENV170625851
FUWD013207378
[FUWD] metagenome; unknown
687
614
-
Ala
GGC
[ENA]
¢þ
>WENV170634070
FUWD013409075
[FUWD] metagenome; unknown
687
614
-
Ala
GGC
[ENA]
¢þ
>WENV170645560
JNSK01000149
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
87
14
-
Ala
GGC
[ENA]
¢þ
>C181018739
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
1327999
1327926
-
Ala
GGC
-
¡û
>C181021100
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
433461
433534
+
Ala
GGC
-
¡û
>C181021333
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
991796
991723
-
Ala
GGC
-
¡û
>C181055892
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
2112769
2112842
+
Ala
GGC
-
¡û
>C181055970
CP022039
Actinomycetota
Kocuria rhizophila FDAARGOS_302 [CP022039]
571834
571759
-
Ala
GGC
-
¡û
>C181187304
CP030039
Actinomycetota
Kocuria sp. BT304 [CP030039]
1369593
1369667
+
Ala
GGC
-
¡û
>C181212471
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
1764746
1764673
-
Ala
GGC
-
¡û
>WENV002128
AACY020059006
Marine microbial communities from Global Ocean Sampling (GOS)
474
551
+
Ala
GGC
[ENA]
>C191144207
CP035504
Actinomycetota
Kocuria indica CE7 [CP035504]
1286606
1286680
+
Ala
GGC
-
¡û
>W09109194
ABUA01000041
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
13168
13241
+
Ala
GGC
[ENA]
¡û
>W1910183617
BJNW01000011
Actinomycetota
Kocuria varians NBRC 15358 [BJNW]
94588
94663
+
Ala
GGC
[ENA]
¡û
>W1910471653
FXBD01000017
Actinomycetota
Kocuria marina [FXBD]
73298
73372
+
Ala
GGC
[ENA]
¡û
>W1910549312
FZPE01000001
Actinomycetota
Micrococcales bacterium KH10 [FZPE]
565791
565716
-
Ala
GGC
[ENA]
¡û
>W1910827509
MWSL01000015
Actinomycetota
Kocuria indica DSM 25126 [MWSL]
64804
64878
+
Ala
GGC
[ENA]
¡û
>W1911114689
NOIT01000007
Actinomycetota
Kocuria carniphila CCM 132 [NOIT]
138116
138189
+
Ala
GGC
[ENA]
¡û
>W1911149954
NPGE01000001
Actinomycetota
Kocuria varians 80 [NPGE]
1868598
1868523
-
Ala
GGC
[ENA]
¡û
>W1911243214
NSGI01000007
Actinomycetota
Kocuria sp. WRN011 [NSGI]
124404
124331
-
Ala
GGC
[ENA]
¡û
>W1911539126
OMPO01000001
Actinomycetota
Blastococcus sp. Marseille-P5729 [OMPO]
856790
856717
-
Ala
GGC
[ENA]
¡û
>W1911582761
PHOA01000163
Actinomycetota
Kocuria tytonicola DSM 104133 [PHOA]
819
892
+
Ala
GGC
[ENA]
¡û
>W1810189406
PKJA01000001
Actinomycetota
Kocuria rhizophila UMB0131 [PKJA]
1754446
1754519
+
Ala
GGC
[ENA]
¡û
>W1810197085
PNJG01000133
Actinomycetota
Kocuria tytonis 442 [PNJG]
4149
4076
-
Ala
GGC
[ENA]
¡û
>W1810200198
PNRK01000011
Actinomycetota
Kocuria rhizophila D2 [PNRK]
107830
107905
+
Ala
GGC
[ENA]
¡û
>W1511317248
JPWX01000770
Actinomycetota
Kocuria rhizophila RF [JPWX]
178
253
+
Ala
GGC
[ENA]
¡û
>W1511352699
JROM01000016
Actinomycetota
Kocuria marina SO9-6 [JROM]
475730
475655
-
Ala
GGC
[ENA]
¡û
>WENV042919
AACY022275974
Marine microbial communities from Global Ocean Sampling (GOS)
265
340
+
Ala
GGC
[ENA]
>W1511489655
JWTC01000009
Actinomycetota
Kocuria rhizophila TPW45 [JWTC]
293877
293802
-
Ala
GGC
[ENA]
¡û
>W1511681649
LFIY01000019
Actinomycetota
Kocuria rhizophila 14ASP [LFIY]
15948
15873
-
Ala
GGC
[ENA]
¡û
>W11163671
AFID01000001
Actinomycetota
Kocuria rhizophila P7-4 [AFID]
142949
143024
+
Ala
GGC
[ENA]
¡û
>WENV047182
AACY022644747
Marine microbial communities from Global Ocean Sampling (GOS)
133
208
+
Ala
GGC
[ENA]
>WENV058142
AACY023319017
Marine microbial communities from Global Ocean Sampling (GOS)
1297
1220
-
Ala
GGC
[ENA]
>WENV058261
AACY023322861
Marine microbial communities from Global Ocean Sampling (GOS)
460
385
-
Ala
GGC
[ENA]
>WENV005911
AACY020164858
Marine microbial communities from Global Ocean Sampling (GOS)
3334
3411
+
Ala
GGC
[ENA]
>WENV061357
AACY023430126
Marine microbial communities from Global Ocean Sampling (GOS)
1188
1113
-
Ala
GGC
[ENA]
>WENV006775
AACY020179540
Marine microbial communities from Global Ocean Sampling (GOS)
1892
1817
-
Ala
GGC
[ENA]
>W1610112354
CZJU01000112
Actinomycetota
Kocuria salsicia [CZJU]
52619
52694
+
Ala
GGC
[ENA]
¡û
>W1610112432
CZJW01000034
Actinomycetota
Kocuria rhizophila [CZJW]
115341
115416
+
Ala
GGC
[ENA]
¡û
>W1610112484
CZJX01000054
Actinomycetota
Kocuria varians [CZJX]
80840
80915
+
Ala
GGC
[ENA]
¡û
>WENV006943
AACY020181936
Marine microbial communities from Global Ocean Sampling (GOS)
3529
3454
-
Ala
GGC
[ENA]
>W1610597572
LFFA01000026
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
15665
15738
+
Ala
GGC
[ENA]
¡û
>W1611041097
LZMM01000038
Actinomycetota
Kocuria sp. ICS0012 [LZMM]
31598
31673
+
Ala
GGC
[ENA]
¡û
>W1710115058
CZJU01000112
Actinomycetota
Kocuria salsicia [CZJU]
52619
52694
+
Ala
GGC
[ENA]
¡û
>W1710115136
CZJW01000034
Actinomycetota
Kocuria rhizophila [CZJW]
115341
115416
+
Ala
GGC
[ENA]
¡û
>W1710115188
CZJX01000054
Actinomycetota
Kocuria varians [CZJX]
80840
80915
+
Ala
GGC
[ENA]
¡û
>W1710607477
FXAC01000015
Actinomycetota
Kocuria indica [FXAC]
64804
64879
+
Ala
GGC
[ENA]
¡û
>W1710718819
LFFA01000026
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
15665
15738
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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