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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.33336 (31 seq.)
>W1711318290
MAYF01000069
Bacteroidota
Chryseobacterium contaminans [MAYF]
2206
2295
+
Ser
GGA
[ENA]
¡û
>W1711318420
MAYG01000023
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
249951
249862
-
Ser
GGA
[ENA]
¡û
>WENV180007833
FLSB01000158
[FLSB] metagenome; saliva
49428
49341
-
Ser
GGA
[ENA]
¢þ
>WENV180758938
ODHY01000011
[ODHY] human metagenome; G_DNA_Buccal mucosa
88703
88790
+
Ser
GGA
[ENA]
¢þ
>WENV180794050
ODIY01000702
[ODIY] human metagenome; G_DNA_Buccal mucosa
2437
2350
-
Ser
GGA
[ENA]
¢þ
>WENV180947468
ODUF01008103
[ODUF] human metagenome; G_DNA_Supragingival plaque
290
377
+
Ser
GGA
[ENA]
¢þ
>WENV181195905
OEQV01001582
[OEQV] metagenome; water of meat washing
2538
2625
+
Ser
GGA
[ENA]
¢þ
>C191111274
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
133191
133278
+
Ser
GGA
-
¡û
>C191112496
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
468308
468221
-
Ser
GGA
-
¡û
>C191112901
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
3651120
3651207
+
Ser
GGA
-
¡û
>C191115859
CP033924
Bacteroidota
Chryseobacterium lactis KC_1864 [CP033924]
2571140
2571053
-
Ser
GGA
-
¡û
>C191116238
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
4421542
4421455
-
Ser
GGA
-
¡û
>C191116416
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
2191865
2191778
-
Ser
GGA
-
¡û
>C191204288
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
4585908
4585821
-
Ser
GGA
-
¡û
>C191218957
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
4172616
4172529
-
Ser
GGA
-
¡û
>C191219150
LR215974
Bacteroidota
Chryseobacterium taihuense 3012STDY6944375 [LR215974]
3405048
3404961
-
Ser
GGA
-
¡û
>W09126984
ACKQ01000051
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
105206
105295
+
Ser
GGA
[ENA]
¡û
>W141802116
JPEQ01000015
Bacteroidota
Chryseobacterium sp. P1-3 [JPEQ]
48684
48773
+
Ser
GGA
[ENA]
¡û
>W1911218484
NRQT01000010
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
159245
159332
+
Ser
GGA
[ENA]
¡û
>W1911701209
QNUE01000006
Bacteroidota
Chryseobacterium flavum KCTC 12877 [QNUE]
178674
178587
-
Ser
GGA
[ENA]
¡û
>W1911701289
QNUF01000028
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
44410
44323
-
Ser
GGA
[ENA]
¡û
>W1810234091
PPED02000007
Bacteroidota
Chryseobacterium phosphatilyticum ISE14 [PPED]
28762
28675
-
Ser
GGA
[ENA]
¡û
>W1810304693
PTPZ01000001
Bacteroidota
Cloacibacterium normanense IMET F [PTPZ]
106311
106224
-
Ser
GGA
[ENA]
¡û
>W1810538594
QDFZ01000008
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
92135
92048
-
Ser
GGA
[ENA]
¡û
>W1810609250
QGTV01000018
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
7163
7076
-
Ser
GGA
[ENA]
¡û
>C151002630
AP014624
Bacteroidota
Chryseobacterium sp. StRB126 [AP014624]
1310221
1310132
-
Ser
GGA
[Ensembl]
¡û
>W1511587161
LAZY01000053
Bacteroidota
Chryseobacterium indologenes J31 [LAZY]
2545
2458
-
Ser
GGA
[ENA]
¡û
>W1611061633
MAYF01000069
Bacteroidota
Chryseobacterium contaminans [MAYF]
2206
2295
+
Ser
GGA
[ENA]
¡û
>W1611061763
MAYG01000023
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
249951
249862
-
Ser
GGA
[ENA]
¡û
>W1710554870
FOIU01000003
Bacteroidota
Chryseobacterium wanjuense [FOIU]
414599
414686
+
Ser
GGA
[ENA]
¡û
>W1710591126
FRBM01000011
Bacteroidota
Chryseobacterium contaminans [FRBM]
22167
22078
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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