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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.333379 (15 seq.)
>W131208402
ATHI01000032
Thermodesulfobacteriota
Alkalidesulfovibrio alkalitolerans DSM 16529 [ATHI]
6431
6356
-
Val
TAC
[ENA]
¡û
>W131224585
AUCX01000015
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
71298
71223
-
Val
TAC
[ENA]
¡û
>W131224587
AUCX01000015
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
766
691
-
Val
TAC
[ENA]
¡û
>WENV180043164
LQAH01004965
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
185
110
-
Val
TAC
[ENA]
¢þ
>WENV180353333
OBLQ010697485
[OBLQ] soil metagenome; soil
229
154
-
Val
TAC
[ENA]
¢þ
>WENV183747631
PPCM01010945
[PPCM] marine sediment metagenome; marine sediment
1298
1373
+
Val
TAC
[ENA]
¢þ
>WENV183747715
PPCM01020767
[PPCM] marine sediment metagenome; marine sediment
730
655
-
Val
TAC
[ENA]
¢þ
>W09118005
ACCN01000005
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
116989
116914
-
Val
TAC
[ENA]
¡û
>W09118008
ACCN01000005
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
106645
106570
-
Val
TAC
[ENA]
¡û
>W09118010
ACCN01000005
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
101916
101841
-
Val
TAC
[ENA]
¡û
>C09104231
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3614322
3614397
+
Val
TAC
[Ensembl]
¡û
>C09104234
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3624666
3624741
+
Val
TAC
[Ensembl]
¡û
>C09104236
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3629395
3629470
+
Val
TAC
[Ensembl]
¡û
>C131018088
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1738389
1738464
+
Val
TAC
[Ensembl]
¡û
>C131018139
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1563715
1563640
-
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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