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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.334980 (20 seq.)
>C171091676
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
908047
908123
+
Met
CAT
-
¡û
>WENV180022080
FTFO01000146
[FTFO] metagenome; soil
1630
1554
-
Ile2
CAT
[ENA]
¡û
>WENV180033778
FTKL01166217
[FTKL] metagenome; soil
107
31
-
Ile2
CAT
[ENA]
¡û
>WENV180268294
OBEQ011951611
[OBEQ] groundwater metagenome; groundwater
195
119
-
Ile2
CAT
[ENA]
¡û
>W141142464
AWQR01000052
Betaproteobacteria
Rhodoferax saidenbachensis ED16 [AWQR]
19168
19244
+
Met
CAT
[ENA]
¡û
>WENV170639603
JFJP01005308
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
18111
18187
+
Met
CAT
[ENA]
¡û
>C191073192
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
434132
434056
-
Met
CAT
-
¡û
>W141561783
JHYS01000019
Betaproteobacteria
Simplicispira psychrophila DSM 11588 [JHYS]
2582
2506
-
Met
CAT
[ENA]
¡û
>SRA1002943
SRR002326.114261
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
77
1
-
Met
CAT
[SRA]
>W1810577635
QEOJ01000016
Betaproteobacteria
Rhodoferax sp. YR267 [QEOJ]
64739
64815
+
Met
CAT
[ENA]
¡û
>W1810594323
QFZK01000003
Betaproteobacteria
Rhodoferax lacus IMCC26218 [QFZK]
129192
129268
+
Met
CAT
[ENA]
¡û
>ENV09001518
ABSR01024035
Freshwater sediment metagenome lwMethylamine_C1
434
510
+
Met
CAT
[ENA]
¡û
>C201172314
CP046023
Betaproteobacteria
Polaromonas sp. Pch-P [CP046023]
1560818
1560894
+
Ile2
CAT
-
¡û
>C211118869
CP059068
Betaproteobacteria
Rhodoferax sp. AJA081-3 [CP059068]
1989550
1989474
-
Ile2
CAT
-
¡û
>C211314861
CP072852
Betaproteobacteria
Rhodoferax sp. PAMC29310 [CP072852]
2284619
2284543
-
Ile2
CAT
-
¡û
>W121084900
AKIV01000010
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
11708
11632
-
Met
CAT
[ENA]
¡û
>W1710523398
FNHX01000003
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
515034
515110
+
Met
CAT
[ENA]
¡û
>W1710524807
FNJA01000002
Betaproteobacteria
Rhodoferax sp. OV413 OV413 [FNJA]
852227
852303
+
Met
CAT
[ENA]
¡û
>W1710557412
FOKZ01000020
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
44800
44876
+
Met
CAT
[ENA]
¡û
>W1710578337
FPBM01000017
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
31465
31541
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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