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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.335449 (53 seq.)
>W1711094375
LTFW01000048
Actinomycetota
Corynebacterium sp. HMSC074A09 HMSC074A09 [LTFW]
5637
5564
-
Lys
TTT
[ENA]
¡û
>W1711094417
LTFX01000012
Actinomycetota
Corynebacterium sp. HMSC076G08 HMSC076G08 [LTFX]
6129
6056
-
Lys
TTT
[ENA]
¡û
>W1711095293
LTGR01000027
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
35132
35207
+
Lys
TTT
[ENA]
¡û
>W1711098053
LTJF01000031
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
105460
105535
+
Lys
TTT
[ENA]
¡û
>W1711098557
LTJR01000010
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
229557
229632
+
Lys
TTT
[ENA]
¡û
>W1711099000
LTKC01000065
Actinomycetota
Corynebacterium sp. HMSC072A04 [LTKC]
37340
37413
+
Lys
TTT
[ENA]
¡û
>W1711099708
LTKS01000014
Actinomycetota
Corynebacterium sp. HMSC070E08 [LTKS]
35129
35202
+
Lys
TTT
[ENA]
¡û
>W1711099759
LTKT01000027
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
5900
5825
-
Lys
TTT
[ENA]
¡û
>W1711102331
LTNQ01000033
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
50295
50370
+
Lys
TTT
[ENA]
¡û
>W1711102395
LTNR01000076
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
39749
39824
+
Lys
TTT
[ENA]
¡û
>W1711103286
LTOO01000022
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
12022
11947
-
Lys
TTT
[ENA]
¡û
>W1711106067
LTRL01000025
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
5619
5544
-
Lys
TTT
[ENA]
¡û
>W1711106220
LTRQ01000030
Actinomycetota
Corynebacterium sp. HMSC035E02 [LTRQ]
6015
5942
-
Lys
TTT
[ENA]
¡û
>W1711108152
LTTL01000041
Actinomycetota
Corynebacterium sp. HMSC034H07 HMSC034H07 [LTTL]
129018
129091
+
Lys
TTT
[ENA]
¡û
>W1711108582
LTTW01000038
Actinomycetota
Corynebacterium sp. HMSC066C02 [LTTW]
5620
5545
-
Lys
TTT
[ENA]
¡û
>W1711108730
LTTZ01000110
Actinomycetota
Corynebacterium sp. HMSC068G04 [LTTZ]
5840
5767
-
Lys
TTT
[ENA]
¡û
>W1711109296
LTUN01000056
Actinomycetota
Corynebacterium sp. HMSC074C01 [LTUN]
27011
27086
+
Lys
TTT
[ENA]
¡û
>W1711110609
LTVS01000011
Actinomycetota
Corynebacterium sp. HMSC072D12 [LTVS]
24964
25039
+
Lys
TTT
[ENA]
¡û
>W1711110959
LTWA01000025
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
5825
5752
-
Lys
TTT
[ENA]
¡û
>W1711113412
LTYH01000008
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
50472
50547
+
Lys
TTT
[ENA]
¡û
>W1711114853
LTZQ01000030
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
6417
6342
-
Lys
TTT
[ENA]
¡û
>W1711186032
LWNW01000035
Actinomycetota
Corynebacterium sp. HMSC08A12 [LWNW]
7272
7199
-
Lys
TTT
[ENA]
¡û
>W1711186577
LWOI01000046
Actinomycetota
Corynebacterium sp. HMSC05E07 [LWOI]
42667
42740
+
Lys
TTT
[ENA]
¡û
>W1711186666
LWOK01000008
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
930
855
-
Lys
TTT
[ENA]
¡û
>W1711187870
LWPW01000006
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
15368
15443
+
Lys
TTT
[ENA]
¡û
>WENV181326426
OFLL01000409
[OFLL] metagenome; faeces
1044
971
-
Lys
TTT
[ENA]
¢þ
>WENV182629003
OJKR01000995
[OJKR] metagenome; surface
3999
4073
+
Lys
TTT
[ENA]
¢þ
>WENV182636183
OJKZ01000801
[OJKZ] metagenome; surface
8787
8861
+
Lys
TTT
[ENA]
¢þ
>WENV182636430
OJKZ01007526
[OJKZ] metagenome; surface
727
654
-
Lys
TTT
[ENA]
¢þ
>WENV182640278
OJLB01001737
[OJLB] metagenome; surface
4294
4368
+
Lys
TTT
[ENA]
¢þ
>WENV182643400
OJLU01006162
[OJLU] metagenome; surface
509
436
-
Lys
TTT
[ENA]
¢þ
>WENV182643796
OJLW01001216
[OJLW] metagenome; surface
8787
8861
+
Lys
TTT
[ENA]
¢þ
>WENV182644123
OJLW01008690
[OJLW] metagenome; surface
1477
1550
+
Lys
TTT
[ENA]
¢þ
>WENV182644862
OJLY01000590
[OJLY] metagenome; surface
12095
12021
-
Lys
TTT
[ENA]
¢þ
>WENV182645301
OJLY01008417
[OJLY] metagenome; surface
730
657
-
Lys
TTT
[ENA]
¢þ
>WENV182646255
OJMA01000619
[OJMA] metagenome; surface
5296
5370
+
Lys
TTT
[ENA]
¢þ
>WENV182671845
OJNM01004684
[OJNM] metagenome; surface
728
655
-
Lys
TTT
[ENA]
¢þ
>W141453288
JFCO01000034
Actinomycetota
Corynebacterium jeikeium [JFCO]
2698
2623
-
Lys
TTT
[ENA]
¡û
>C181110014
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
2411712
2411638
-
Lys
TTT
-
¡û
>W09127841
ACLH01000052
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
29047
29122
+
Lys
TTT
[ENA]
¡û
>W141733451
JNKV01000012
Actinomycetota
Corynebacterium vitaeruminis Ga6A13 [JNKV]
106040
106115
+
Lys
TTT
[ENA]
¡û
>W1910442369
FWFE01000046
Actinomycetota
Corynebacterium casei JB4 [FWFE]
7316
7243
-
Lys
TTT
[ENA]
¡û
>C09102748
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
2339713
2339638
-
Lys
TTT
[Ensembl]
¡û
>W1911596625
PNHI01000001
Actinomycetota
Corynebacterium aurimucosum UMB1300 [PNHI]
328157
328230
+
Lys
TTT
[ENA]
¡û
>C151007277
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
2218724
2218649
-
Lys
TTT
[Ensembl]
¡û
>C151039887
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
780506
780431
-
Lys
TTT
[Ensembl]
¡û
>C151073129
CP010827
Actinomycetota
Corynebacterium singulare IBS B52218 [CP010827]
2329004
2328931
-
Lys
TTT
[Ensembl]
¡û
>W1511438568
JUMN01000104
Actinomycetota
Corynebacterium aurimucosum 945_CAUR [JUMN]
714
641
-
Lys
TTT
[ENA]
¡û
>W1511438999
JUNC01000035
Actinomycetota
Corynebacterium jeikeium 931_CJEI [JUNC]
3645
3570
-
Lys
TTT
[ENA]
¡û
>W1610069790
BCSU01000001
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
221982
222057
+
Lys
TTT
[ENA]
¡û
>W1610419419
FIZC01000013
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
64969
65044
+
Lys
TTT
[ENA]
¡û
>W1710067163
BCSU01000001
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
221982
222057
+
Lys
TTT
[ENA]
¡û
>W1710419155
FIZC01000013
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
64969
65044
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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