This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.335785 (7 seq.)
>WENV181188425
OEOE01127410
[OEOE] activated sludge metagenome; Activated Sludge
296
223
-
Lys
TTT
[ENA]
¡û
>WENV181367789
OFQD01000202
[OFQD] freshwater metagenome; Freshwater Lake
653
726
+
Lys
TTT
[ENA]
¡û
>W1910705767
MFEG01000047
Unclassified
Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_52_17 [MFEG]
6013
5938
-
Lys
TTT
[ENA]
¡û
>W2010839193
MFEG01000047
Unclassified
Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_52_17 [MFEG]
6013
5938
-
Lys
TTT
[ENA]
¡û
>C211197710
CP064994
Unclassified
Candidatus Moranbacteria bacterium [CP064994]
408024
408099
+
Lys
TTT
-
¡û
>W1511618270
LCQU01000001
Unclassified
Parcubacteria group bacterium GW2011_GWA2_51_12 GW2011_GWA2_51_12 [LCQU]
24
99
+
Lys
CTT
[ENA]
¡û
>W1511618617
LCRE01000005
Unclassified
Parcubacteria group bacterium GW2011_GWA2_52_8 GW2011_GWA2_52_8 [LCRE]
6769
6844
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK