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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.335785 (11 seq.)
>W1710875440
LMOJ01000023
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
603
528
-
Arg
CCG
[ENA]
¡û
>WENV183733517
PJTY01003321
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
351
276
-
Arg
CCG
[ENA]
¢þ
>WENV183739082
PJUE01001461
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
6512
6437
-
Arg
CCG
[ENA]
¢þ
>C181163915
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
576669
576744
+
Arg
CCG
-
¡û
>C191150809
CP036401
Betaproteobacteria
Pseudoduganella albidiflava DSM 17472 [CP036401]
6753750
6753675
-
Arg
CCG
-
¡û
>C191157337
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
3507226
3507151
-
Arg
CCG
-
¡û
>C191173965
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
5153020
5153095
+
Arg
CCG
-
¡û
>C151100173
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
5528367
5528292
-
Arg
CCG
[Ensembl]
¡û
>W1610070506
BCTH01000097
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
51424
51499
+
Arg
CCG
[ENA]
¡û
>W1710067879
BCTH01000097
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
51424
51499
+
Arg
CCG
[ENA]
¡û
>W1710545171
FOBG01000003
Betaproteobacteria
Duganella sp. CF402 [FOBG]
154537
154462
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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