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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338236 (53 seq.)
>WENV180138201
OATP01016729
[OATP] human gut metagenome; faeces
31
103
+
Phe
GAA
[ENA]
¢þ
>WENV180153028
OAUR01000233
[OAUR] human gut metagenome; faeces
3905
3833
-
Phe
GAA
[ENA]
¢þ
>WENV180188524
OAWX01000229
[OAWX] human gut metagenome; faeces
24420
24492
+
Phe
GAA
[ENA]
¢þ
>WENV180236070
OBCU01092675
[OBCU] human gut metagenome; human gut
127
199
+
Phe
GAA
[ENA]
¢þ
>WENV180426667
OBVZ01000226
[OBVZ] human gut metagenome; faeces
37688
37760
+
Phe
GAA
[ENA]
¢þ
>WENV180431953
OBWI01000070
[OBWI] human gut metagenome; faeces
2023
1951
-
Phe
GAA
[ENA]
¢þ
>WENV180491274
OBZV01000782
[OBZV] human gut metagenome; faeces
4824
4896
+
Phe
GAA
[ENA]
¢þ
>WENV181217002
OFCH01000019
[OFCH] metagenome; Human gut stool
52443
52371
-
Phe
GAA
[ENA]
¢þ
>WENV181218558
OFCM01004603
[OFCM] metagenome; Human gut stool
1100
1028
-
Phe
GAA
[ENA]
¢þ
>WENV181220084
OFCQ01000055
[OFCQ] metagenome; Human gut stool
83664
83592
-
Phe
GAA
[ENA]
¢þ
>WENV181225722
OFDJ01000053
[OFDJ] metagenome; Human gut stool
61402
61330
-
Phe
GAA
[ENA]
¢þ
>WENV181566634
OGJJ01000030
[OGJJ] metagenome; Human gut stool
100879
100951
+
Phe
GAA
[ENA]
¢þ
>WENV181746893
OGQN01005710
[OGQN] human gut metagenome; faeces
6250
6322
+
Phe
GAA
[ENA]
¢þ
>WENV182065889
OHFB01000255
[OHFB] human gut metagenome; feces
16353
16281
-
Phe
GAA
[ENA]
¢þ
>WENV182078201
OHFY01003091
[OHFY] human gut metagenome; feces
3211
3139
-
Phe
GAA
[ENA]
¢þ
>WENV182268319
OHUB01000096
[OHUB] human gut metagenome; feces
14152
14080
-
Phe
GAA
[ENA]
¢þ
>WENV182728642
OJPW01024495
[OJPW] human gut metagenome; stool sample
111
39
-
Phe
GAA
[ENA]
¢þ
>WENV182758681
OJRI01012833
[OJRI] human gut metagenome; stool sample
1131
1203
+
Phe
GAA
[ENA]
¢þ
>WENV182781252
OJSE01002737
[OJSE] human gut metagenome; human gut
14042
14114
+
Phe
GAA
[ENA]
¢þ
>WENV182944289
OKVI01012724
[OKVI] human gut metagenome; human gut
1209
1137
-
Phe
GAA
[ENA]
¢þ
>WENV183100753
OLNG01000351
[OLNG] human gut metagenome; faeces
11587
11515
-
Phe
GAA
[ENA]
¢þ
>WENV183145649
OLOM01000592
[OLOM] human gut metagenome; faeces
3889
3817
-
Phe
GAA
[ENA]
¢þ
>WENV183382801
OLYL01017048
[OLYL] human gut metagenome; feces
382
310
-
Phe
GAA
[ENA]
¢þ
>WENV183434644
OMBZ01019883
[OMBZ] human gut metagenome; feces
677
605
-
Phe
GAA
[ENA]
¢þ
>WENV183438984
OMCF01017048
[OMCF] human gut metagenome; feces
382
310
-
Phe
GAA
[ENA]
¢þ
>WENV183519081
OMNT01000113
[OMNT] human gut metagenome; faeces
69180
69252
+
Phe
GAA
[ENA]
¢þ
>WENV183772556
PPYF01017355
[PPYF] human gut metagenome; stool from patient with Crohn's disease
9092
9164
+
Phe
GAA
[ENA]
¢þ
>WENV183781488
PPYF01196883
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3785
3857
+
Phe
GAA
[ENA]
¢þ
>C193003502
LR134369
Actinomycetota
Bifidobacterium longum NCTC11818 [LR134369]
1123934
1123862
-
Phe
GAA
-
¡û
>C191208470
LR134354
Actinomycetota
Bifidobacterium longum subsp. infantis NCTC11817 [LR134354]
1464873
1464945
+
Phe
GAA
-
¡û
>W143013963
JGYZ01000003
Actinomycetota
Bifidobacterium longum subsp. longum [JGYZ]
164348
164274
-
Phe
GAA
[ENA]
¡û
>W1910343132
FTRM01000010
Actinomycetota
Bifidobacterium longum [FTRM]
39848
39920
+
Phe
GAA
[ENA]
¡û
>W1910343221
FTRN01000031
Actinomycetota
Bifidobacterium longum [FTRN]
18111
18039
-
Phe
GAA
[ENA]
¡û
>W1910343435
FTRR01000017
Actinomycetota
Bifidobacterium longum [FTRR]
20543
20471
-
Phe
GAA
[ENA]
¡û
>C09102381
CP001095
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [CP001095]
1465078
1465152
+
Phe
GAA
-
¡û
>W1830016567
QRZU01000014
Actinomycetota
Bifidobacterium longum AF13-41 [QRZU]
32463
32391
-
Phe
GAA
[ENA]
¡û
>W1830016587
QRZY01000015
Actinomycetota
Bifidobacterium longum AF13-34 [QRZY]
2110
2182
+
Phe
GAA
[ENA]
¡û
>W1830016751
QSBG01000007
Actinomycetota
Bifidobacterium longum AF05-16 [QSBG]
35051
35123
+
Phe
GAA
[ENA]
¡û
>W1510059598
CCWN01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1206122787 [CCWN]
4924
4998
+
Phe
GAA
[ENA]
¡û
>W1510059664
CCWO01000034
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1307292462 [CCWO]
5053
5127
+
Phe
GAA
[ENA]
¡û
>W1510059731
CCWP01000029
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401111250 [CCWP]
4375
4449
+
Phe
GAA
[ENA]
¡û
>W1510059798
CCWQ01000023
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621b [CCWQ]
5052
5126
+
Phe
GAA
[ENA]
¡û
>W1510059864
CCWR01000018
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845a [CCWR]
39800
39874
+
Phe
GAA
[ENA]
¡û
>W1510059931
CCWS01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621a [CCWS]
39828
39902
+
Phe
GAA
[ENA]
¡û
>W1510059998
CCWT01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845b [CCWT]
39824
39898
+
Phe
GAA
[ENA]
¡û
>W1510060065
CCWU01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401242951 [CCWU]
39796
39870
+
Phe
GAA
[ENA]
¡û
>C11300114
AP010888
Actinomycetota
Bifidobacterium longum subsp. longum JCM 1217 [AP010888]
1123934
1123860
-
Phe
GAA
[Ensembl]
¡û
>C11103160
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1464869
1464943
+
Phe
GAA
-
¡û
>C11103227
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1464869
1464943
+
Phe
GAA
-
¡û
>W121067340
AJTF01000079
Actinomycetota
Bifidobacterium longum subsp. longum 1-6B [AJTF]
12513
12587
+
Phe
GAA
[ENA]
¡û
>W121067661
AJTM01000002
Actinomycetota
Bifidobacterium longum subsp. longum 44B [AJTM]
12283
12357
+
Phe
GAA
[ENA]
¡û
>W1610518907
JDTT01000026
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM DSM 20088 [JDTT]
46305
46231
-
Phe
GAA
[ENA]
¡û
>W133002870
AQGL01000005
Actinomycetota
Bifidobacterium longum D2957 [AQGL]
32427
32353
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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