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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338269 (42 seq.)
>W1710867411
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
421745
421671
-
Asn
GTT
[ENA]
¡û
>W1710912508
LNRR01000003
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
244459
244533
+
Asn
GTT
[ENA]
¡û
>W1710912612
LNRT01000006
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
36832
36906
+
Asn
GTT
[ENA]
¡û
>W1710913023
LNSC01000039
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
13359
13433
+
Asn
GTT
[ENA]
¡û
>W1710913058
LNSD01000005
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
238152
238226
+
Asn
GTT
[ENA]
¡û
>W1711127910
LURB01000117
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
85759
85685
-
Asn
GTT
[ENA]
¡û
>W1711128010
LURH01000001
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
133276
133350
+
Asn
GTT
[ENA]
¡û
>W1712105778
NISJ01000007
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
160465
160539
+
Asn
GTT
[ENA]
¡û
>W1712105801
NISK01000001
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
219483
219557
+
Asn
GTT
[ENA]
¡û
>C171128447
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
497138
497064
-
Asn
GTT
-
¡û
>WENV180297837
OBJA01097146
[OBJA] soil metagenome; sediment, water from around vicinity
156
82
-
Asn
GTT
[ENA]
¢þ
>WENV181166977
OEIU01005238
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2423
2349
-
Asn
GTT
[ENA]
¢þ
>WENV181168414
OEIU01340109
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
304
230
-
Asn
GTT
[ENA]
¢þ
>WENV181171186
OEIV010165722
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
205
131
-
Asn
GTT
[ENA]
¢þ
>WENV181402250
OFTY01000329
[OFTY] sludge metagenome; sludge
37720
37646
-
Asn
GTT
[ENA]
¢þ
>ENV08000204
ABLY01016215
viral fraction from Arctic Ocean
120
44
-
Asn
GTT
[ENA]
¡û
>ENV08000229
ABLY01057472
viral fraction from Arctic Ocean
17
91
+
Asn
GTT
[ENA]
¡û
>WENV170018806
BBPD01001100
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
30284
30213
-
Asn
GTT
[ENA]
¢þ
>WENV170020790
BBPE01029086
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
509
438
-
Asn
GTT
[ENA]
¢þ
>WENV170734382
LULK01004858
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
740
814
+
Asn
GTT
[ENA]
¢þ
>WENV170735705
LULL01008601
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
829
903
+
Asn
GTT
[ENA]
¢þ
>WENV170738412
LULP01000145
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
65453
65379
-
Asn
GTT
[ENA]
¢þ
>WENV170741465
LULS01038723
[LULS] marine metagenome; Red Sea water column Station 108 - depth 200m
206
280
+
Asn
GTT
[ENA]
¢þ
>WENV170759526
LUMT01000002
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
320951
320877
-
Asn
GTT
[ENA]
¢þ
>WENV170761365
LUMV01000060
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
8677
8603
-
Asn
GTT
[ENA]
¢þ
>WENV170973634
MTKY01049147
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6731
6657
-
Asn
GTT
[ENA]
¢þ
>C191163828
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
1035324
1035250
-
Asn
GTT
-
¡û
>W1910501764
FYAT01000012
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
806044
806118
+
Asn
GTT
[ENA]
¡û
>SRA1000155
SRR001036.149757
Marine Viruses from Arctic Ocean (SRP000129)
17
91
+
Asn
GTT
[SRA]
>SRA1000168
SRR001036.245786
Marine Viruses from Arctic Ocean (SRP000129)
120
44
-
Asn
GTT
[SRA]
>C151044385
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
3354246
3354320
+
Asn
GTT
[Ensembl]
¡û
>W1510016990
BBSY01000003
Alphaproteobacteria
alpha proteobacterium U9-1i [BBSY]
343284
343358
+
Asn
GTT
[ENA]
¡û
>C161043682
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
599040
598966
-
Asn
GTT
[Ensembl]
¡û
>C161055595
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
71019
71093
+
Asn
GTT
[Ensembl]
¡û
>W1610729757
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
421745
421671
-
Asn
GTT
[ENA]
¡û
>W1610770867
LNRR01000003
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
244459
244533
+
Asn
GTT
[ENA]
¡û
>W1610770971
LNRT01000006
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
36832
36906
+
Asn
GTT
[ENA]
¡û
>W1610771382
LNSC01000039
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
13359
13433
+
Asn
GTT
[ENA]
¡û
>W1610771417
LNSD01000005
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
238152
238226
+
Asn
GTT
[ENA]
¡û
>W1610939024
LURB01000117
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
85759
85685
-
Asn
GTT
[ENA]
¡û
>W1610939124
LURH01000001
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
133276
133350
+
Asn
GTT
[ENA]
¡û
>W1710540021
FNWK01000001
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
534727
534801
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK