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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338274 (63 seq.)
>W1710860882
LMDF01000007
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
314725
314799
+
Val
TAC
[ENA]
¡û
>W1710863478
LMFD01000012
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
214964
214890
-
Val
TAC
[ENA]
¡û
>W1710864163
LMFQ01000025
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
156266
156340
+
Val
TAC
[ENA]
¡û
>W1710864463
LMFX01000001
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
80904
80978
+
Val
TAC
[ENA]
¡û
>W1710865961
LMHC01000002
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
176938
177012
+
Val
TAC
[ENA]
¡û
>W1710866012
LMHD01000010
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
65275
65201
-
Val
TAC
[ENA]
¡û
>W1710899405
LNIY01000002
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
10599
10673
+
Val
TAC
[ENA]
¡û
>W131170062
ARFG01000003
Alphaproteobacteria
Neomegalonema perideroedes DSM 15528 [ARFG]
161251
161177
-
Val
TAC
[ENA]
¡û
>W131221561
AUAO01000003
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
126741
126815
+
Val
TAC
[ENA]
¡û
>W131226673
AUEO01000002
Alphaproteobacteria
Caulobacter sp. URHA0033 [AUEO]
74907
74833
-
Val
TAC
[ENA]
¡û
>w018479
AATH01000001
Alphaproteobacteria
Caulobacter sp. K31 [AATH]
2236275
2236204
-
Val
TAC
[ENA]
¡û
>WENV180015867
FSTO01000019
[FSTO] metagenome; soil
675
749
+
Val
TAC
[ENA]
¢þ
>WENV180015880
FSTP01000325
[FSTP] metagenome; soil
3065
2991
-
Val
TAC
[ENA]
¢þ
>WENV180016609
FSVN01000091
[FSVN] metagenome; soil
5620
5546
-
Val
TAC
[ENA]
¢þ
>WENV180024320
FTIG01111826
[FTIG] metagenome; soil
1513
1587
+
Val
TAC
[ENA]
¢þ
>WENV180029151
FTJI01083289
[FTJI] metagenome; soil
43
117
+
Val
TAC
[ENA]
¢þ
>WENV180030680
FTJN01002811
[FTJN] metagenome; soil
91112
91038
-
Val
TAC
[ENA]
¢þ
>WENV180033709
FTKL01024669
[FTKL] metagenome; soil
2581
2655
+
Val
TAC
[ENA]
¢þ
>WENV180034677
FTKR01086277
[FTKR] metagenome; soil
43
117
+
Val
TAC
[ENA]
¢þ
>WENV181169750
OEIV010009259
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2639
2713
+
Val
TAC
[ENA]
¢þ
>C08002376
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
3082320
3082249
-
Val
TAC
[Ensembl]
¡û
>WENV183731630
PJTT01000071
[PJTT] soil metagenome; Soil (2) enriched on wood chips
3810
3884
+
Val
TAC
[ENA]
¢þ
>WENV183743337
PJUJ01000540
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
9253
9327
+
Val
TAC
[ENA]
¢þ
>WENV183743388
PJUJ01000804
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
3508
3582
+
Val
TAC
[ENA]
¢þ
>WENV183744077
PJUK01000336
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
9234
9308
+
Val
TAC
[ENA]
¢þ
>WENV183744219
PJUK01002198
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
1625
1551
-
Val
TAC
[ENA]
¢þ
>WENV183744958
PJUL01000926
[PJUL] feces metagenome; Chicken feces enriched on filter paper
9253
9327
+
Val
TAC
[ENA]
¢þ
>WENV183745022
PJUL01001390
[PJUL] feces metagenome; Chicken feces enriched on filter paper
3508
3582
+
Val
TAC
[ENA]
¢þ
>WENV170555781
CXWL01002153
[CXWL] groundwater metagenome; biofilm material
76944
77018
+
Val
TAC
[ENA]
¢þ
>WENV170556187
CXWL01005521
[CXWL] groundwater metagenome; biofilm material
1573
1647
+
Val
TAC
[ENA]
¢þ
>WENV170557299
CXWL01023371
[CXWL] groundwater metagenome; biofilm material
3262
3336
+
Val
TAC
[ENA]
¢þ
>WENV170680641
LFEF01006335
[LFEF] freshwater metagenome; waterbloom
262
188
-
Val
TAC
[ENA]
¢þ
>WENV170709146
LNFM01000140
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
157223
157297
+
Val
TAC
[ENA]
¢þ
>C191040415
CP026100
Alphaproteobacteria
Caulobacter flavus RHGG3 [CP026100]
3710024
3710098
+
Val
TAC
-
¡û
>W141779490
JONW01000007
Alphaproteobacteria
Caulobacter sp. UNC358MFTsu5.1 [JONW]
470569
470643
+
Val
TAC
[ENA]
¡û
>W141815965
JQJN01000011
Alphaproteobacteria
Caulobacter henricii [JQJN]
56942
57016
+
Val
TAC
[ENA]
¡û
>W141816057
JQJP01000009
Alphaproteobacteria
Caulobacter henricii [JQJP]
129023
129097
+
Val
TAC
[ENA]
¡û
>W141819040
JQLZ01000005
Alphaproteobacteria
Caulobacter henricii [JQLZ]
195338
195412
+
Val
TAC
[ENA]
¡û
>W1911139225
NOXS01000032
Alphaproteobacteria
Elstera cyanobacteriorum TH019 [NOXS]
110884
110958
+
Val
TAC
[ENA]
¡û
>W1810069366
PEBG01000001
Alphaproteobacteria
Caulobacter sp. FWC26 [PEBG]
3052053
3052127
+
Val
TAC
[ENA]
¡û
>W1810073501
PEGG01000016
Alphaproteobacteria
Caulobacter sp. B11 [PEGG]
11494
11568
+
Val
TAC
[ENA]
¡û
>W1810177586
PJRQ01000019
Alphaproteobacteria
Caulobacter flavus CGMCC1 15093 [PJRQ]
101822
101748
-
Val
TAC
[ENA]
¡û
>W1810177713
PJRS01000043
Alphaproteobacteria
Caulobacter zeae 410 [PJRS]
36292
36218
-
Val
TAC
[ENA]
¡û
>W1810474474
QAII01000048
Alphaproteobacteria
Caulobacter sp. HMWF025 [QAII]
30053
30127
+
Val
TAC
[ENA]
¡û
>W1810474992
QAIR01000021
Alphaproteobacteria
Caulobacter sp. HMWF009 [QAIR]
23451
23525
+
Val
TAC
[ENA]
¡û
>W1810543649
QDKO01000021
Alphaproteobacteria
Caulobacter radicis 695 [QDKO]
40408
40482
+
Val
TAC
[ENA]
¡û
>W1810543681
QDKP01000011
Alphaproteobacteria
Caulobacter radicis 736 [QDKP]
275757
275683
-
Val
TAC
[ENA]
¡û
>W1810543765
QDKQ01000071
Alphaproteobacteria
Caulobacter endophyticus 774 [QDKQ]
246250
246324
+
Val
TAC
[ENA]
¡û
>W1510017010
BBSY01000003
Alphaproteobacteria
alpha proteobacterium U9-1i [BBSY]
680330
680256
-
Val
TAC
[ENA]
¡û
>W1511271192
JOKM01000079
Alphaproteobacteria
Acetobacter tropicalis DmCS_006 [JOKM]
39488
39414
-
Val
TAC
[ENA]
¡û
>W1511569458
LAJY01000577
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
1178
1104
-
Val
TAC
[ENA]
¡û
>C161049350
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
1822610
1822684
+
Val
TAC
[Ensembl]
¡û
>C161053926
CP013244
Alphaproteobacteria
Candidatus Viadribacter manganicus A272 [CP013244]
182744
182670
-
Val
TAC
[Ensembl]
¡û
>C161105517
LN606600
Alphaproteobacteria
Acetobacter senegalensis 108B [LN606600]
3052313
3052387
+
Val
TAC
[Ensembl]
¡û
>W121086792
AKKF01000306
Alphaproteobacteria
Caulobacter sp. AP07 [AKKF]
2630
2556
-
Val
TAC
[ENA]
¡û
>W1610723228
LMDF01000007
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
314725
314799
+
Val
TAC
[ENA]
¡û
>W1610725824
LMFD01000012
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
214964
214890
-
Val
TAC
[ENA]
¡û
>W1610726509
LMFQ01000025
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
156266
156340
+
Val
TAC
[ENA]
¡û
>W1610726809
LMFX01000001
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
80904
80978
+
Val
TAC
[ENA]
¡û
>W1610728307
LMHC01000002
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
176938
177012
+
Val
TAC
[ENA]
¡û
>W1610728358
LMHD01000010
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
65275
65201
-
Val
TAC
[ENA]
¡û
>W1610759808
LNIY01000002
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
10599
10673
+
Val
TAC
[ENA]
¡û
>W1710565874
FORN01000080
Alphaproteobacteria
Caulobacter sp. UNC279MFTsu5.1 [FORN]
6184
6258
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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