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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338283 (135 seq.)
>W1710996633
LQBP01000001
Alphaproteobacteria
Ruegeria profundi ZGT108 [LQBP]
5806
5732
-
Val
CAC
[ENA]
¡û
>W1711175290
LWER01000133
Alphaproteobacteria
Sulfitobacter sp. HI0027 HI0027 [LWER]
46740
46814
+
Val
CAC
[ENA]
¡û
>W1711229491
LXYM01000012
Alphaproteobacteria
Sulfitobacter geojensis [LXYM]
2377
2303
-
Val
CAC
[ENA]
¡û
>W1711385817
MEES01000002
Alphaproteobacteria
Paracoccus sp. SCN 68-21 [MEES]
84361
84435
+
Val
CAC
[ENA]
¡û
>W1711711783
MTBG01000003
Alphaproteobacteria
Pseudoruegeria sp. SK021 [MTBG]
112970
112896
-
Val
CAC
[ENA]
¡û
>W131180855
ARNL01000043
Alphaproteobacteria
Yoonia vestfoldensis DSM 16212 [ARNL]
7881
7807
-
Val
CAC
[ENA]
¡û
>C171047881
CP016364
Alphaproteobacteria
Phaeobacter porticola P97 [CP016364]
2098418
2098344
-
Val
CAC
-
¡û
>C171092071
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
842461
842387
-
Val
CAC
-
¡û
>C171101172
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
970150
970076
-
Val
CAC
-
¡û
>C171108671
CP020474
Alphaproteobacteria
Roseovarius mucosus SMR3 [CP020474]
3836041
3836115
+
Val
CAC
-
¡û
>W131155847
AQOX01000003
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [AQOX]
245234
245308
+
Val
CAC
[ENA]
¡û
>w027752
ABCL01000007
Alphaproteobacteria
Roseovarius sp. TM1035 [ABCL]
53085
53159
+
Val
CAC
[ENA]
¡û
>w012884
AAMV01000018
Alphaproteobacteria
Roseovarius sp. 217 [AAMV]
32434
32508
+
Val
CAC
[ENA]
¡û
>W141020469
AJKJ01000055
Alphaproteobacteria
Citreicella sp. 357 [AJKJ]
33223
33149
-
Val
CAC
[ENA]
¡û
>WENV180358947
OBNQ01070021
[OBNQ] marine metagenome; ENVO 00002150
320
246
-
Val
CAC
[ENA]
¢þ
>WENV180364232
OBNZ01160506
[OBNZ] marine metagenome; ENVO:00002010
284
210
-
Val
CAC
[ENA]
¢þ
>WENV180390909
OBPM01000001
[OBPM] marine metagenome; ENVO:00002010
106012
106086
+
Val
CAC
[ENA]
¢þ
>WENV180394431
OBPS01005095
[OBPS] marine metagenome; ENVO:00002010 seawater
706
780
+
Val
CAC
[ENA]
¢þ
>W141043782
AMGO01000052
Alphaproteobacteria
Oceaniovalibus guishaninsula JLT2003 [AMGO]
94874
94800
-
Val
CAC
[ENA]
¡û
>WENV180593803
OCOY01000016
[OCOY] marine metagenome; ENVO:00002010
45906
45832
-
Val
CAC
[ENA]
¢þ
>W141063308
APGJ01000004
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [APGJ]
246108
246182
+
Val
CAC
[ENA]
¡û
>WENV181324208
OFLC01007235
[OFLC] marine metagenome; melt pond
13
87
+
Val
CAC
[ENA]
¢þ
>W141230416
BATB01000003
Alphaproteobacteria
Limimaricola cinnabarinus LL-001 [BATB]
142735
142809
+
Val
CAC
[ENA]
¡û
>WENV182541684
OJAU01000508
[OJAU] seawater metagenome; Sea water
11131
11205
+
Val
CAC
[ENA]
¢þ
>WENV182543825
OJBD01000029
[OJBD] seawater metagenome; Sea water
20760
20686
-
Val
CAC
[ENA]
¢þ
>WENV182544872
OJBK01002156
[OJBK] seawater metagenome; Sea water
347
273
-
Val
CAC
[ENA]
¢þ
>WENV182545949
OJBO01000169
[OJBO] seawater metagenome; Sea water
4883
4809
-
Val
CAC
[ENA]
¢þ
>WENV182546646
OJBP01000691
[OJBP] seawater metagenome; Sea water
4571
4497
-
Val
CAC
[ENA]
¢þ
>WENV182547745
OJBT01001933
[OJBT] seawater metagenome; Sea water
1736
1810
+
Val
CAC
[ENA]
¢þ
>WENV182549136
OJBX01024772
[OJBX] seawater metagenome; Sea water
590
516
-
Val
CAC
[ENA]
¢þ
>WENV182549661
OJBY01006009
[OJBY] seawater metagenome; Sea water
237
163
-
Val
CAC
[ENA]
¢þ
>WENV182555432
OJDA01000493
[OJDA] seawater metagenome; Sea water
1814
1740
-
Val
CAC
[ENA]
¢þ
>WENV182565136
OJEG01006543
[OJEG] seawater metagenome; Sea water
536
610
+
Val
CAC
[ENA]
¢þ
>WENV182568912
OJEX01001425
[OJEX] seawater metagenome; Sea water
1232
1158
-
Val
CAC
[ENA]
¢þ
>WENV182579260
OJGS01003405
[OJGS] seawater metagenome; Sea water
2454
2380
-
Val
CAC
[ENA]
¢þ
>WENV182583777
OJHE01006261
[OJHE] seawater metagenome; Sea water
559
633
+
Val
CAC
[ENA]
¢þ
>WENV182587431
OJHM01005794
[OJHM] seawater metagenome; Sea water
403
329
-
Val
CAC
[ENA]
¢þ
>WENV182591761
OJIO01004005
[OJIO] seawater metagenome; Sea water
1376
1302
-
Val
CAC
[ENA]
¢þ
>WENV182593286
OJIT01024680
[OJIT] seawater metagenome; Sea water
124
51
-
Val
CAC
[ENA]
¢þ
>W141284771
JAMD01000001
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae H3 [JAMD]
414219
414145
-
Val
CAC
[ENA]
¡û
>WENV183057159
OLHK01006516
[OLHK] seawater metagenome; Sea water
929
1003
+
Val
CAC
[ENA]
¢þ
>WENV183060623
OLHY01000818
[OLHY] seawater metagenome; Sea water
4306
4380
+
Val
CAC
[ENA]
¢þ
>WENV183065163
OLII01039151
[OLII] seawater metagenome; Sea water
374
448
+
Val
CAC
[ENA]
¢þ
>WENV183627804
OOGL01049565
[OOGL] marine metagenome; sea ice
529
455
-
Val
CAC
[ENA]
¢þ
>WENV170014607
AYSL01000255
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
2773
2847
+
Val
CAC
[ENA]
¢þ
>WENV170269232
CERH01076491
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
428
502
+
Val
CAC
[ENA]
¢þ
>WENV170602364
FUWD010231150
[FUWD] metagenome; unknown
330
256
-
Val
CAC
[ENA]
¢þ
>WENV170674287
LAZR01055663
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
401
475
+
Val
CAC
[ENA]
¢þ
>WENV170704601
LLEL01007353
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
142
68
-
Val
CAC
[ENA]
¢þ
>WENV170783703
MAAC01018389
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6879
6953
+
Val
CAC
[ENA]
¢þ
>WENV170961933
MLJW01008263
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
903
977
+
Val
CAC
[ENA]
¢þ
>PL191001403
CP039965
Alphaproteobacteria
Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965)
891112
891038
-
Val
CAC
[ENA]
¡û
>C181064480
CP022415
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SMR1 [CP022415]
1222659
1222733
+
Val
CAC
-
¡û
>C181068104
CP022540
Alphaproteobacteria
Antarctobacter heliothermus SMS3 [CP022540]
3195826
3195900
+
Val
CAC
-
¡û
>C181187976
CP030099
Alphaproteobacteria
Roseovarius sp. AK1035 [CP030099]
2638944
2639018
+
Val
CAC
-
¡û
>C191131962
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
1532300
1532374
+
Val
CAC
-
¡û
>C191159589
CP038439
Alphaproteobacteria
Paracoccus liaowanqingii 2251 [CP038439]
2402213
2402139
-
Val
CAC
-
¡û
>W141562461
JHZF01000011
Alphaproteobacteria
Pseudooceanicola nanhaiensis DSM 18065 [JHZF]
1608445
1608371
-
Val
CAC
[ENA]
¡û
>W141818740
JQLS01000008
Alphaproteobacteria
Roseovarius sp. MCTG156(2b) [JQLS]
2115313
2115239
-
Val
CAC
[ENA]
¡û
>W1910005013
AWWI01000079
Alphaproteobacteria
Puniceibacterium antarcticum SM1211 [AWWI]
1236
1162
-
Val
CAC
[ENA]
¡û
>W1910442626
FWFJ01000016
Alphaproteobacteria
Roseovarius gaetbuli CECT 8370 [FWFJ]
16900
16826
-
Val
CAC
[ENA]
¡û
>W1910443285
FWFY01000003
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
266804
266878
+
Val
CAC
[ENA]
¡û
>W1910443317
FWFZ01000001
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
364738
364664
-
Val
CAC
[ENA]
¡û
>W1910547096
FZNN01000001
Alphaproteobacteria
Puniceibacterium sediminis DSM 29052 [FZNN]
565291
565365
+
Val
CAC
[ENA]
¡û
>W1910548449
FZON01000009
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
36546
36472
-
Val
CAC
[ENA]
¡û
>W1910743995
MHZT01000034
Alphaproteobacteria
Rhodobacterales bacterium RIFCSPHIGHO2_02_FULL_62_130 [MHZT]
311926
312000
+
Val
CAC
[ENA]
¡û
>W1910744047
MHZU01000038
Alphaproteobacteria
Rhodobacterales bacterium RIFCSPHIGHO2_12_FULL_62_75 [MHZU]
311897
311971
+
Val
CAC
[ENA]
¡û
>W1911189711
NQWH01000016
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
71253
71179
-
Val
CAC
[ENA]
¡û
>W1911718104
QQVY01000005
Alphaproteobacteria
Paracoccus sp. JM45 [QQVY]
98834
98908
+
Val
CAC
[ENA]
¡û
>W1911749923
QWJJ01000011
Alphaproteobacteria
Pseudooceanicola sediminis CY03 [QWJJ]
112520
112446
-
Val
CAC
[ENA]
¡û
>W1810400370
PYGB01000002
Alphaproteobacteria
Limimaricola soesokkakensis DSM 29956 [PYGB]
266772
266846
+
Val
CAC
[ENA]
¡û
>W1810426270
PYWA01000007
Alphaproteobacteria
Paracoccus indicus IO390502 [PYWA]
203600
203526
-
Val
CAC
[ENA]
¡û
>W1810444989
PZKF01000010
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
13068
13142
+
Val
CAC
[ENA]
¡û
>W1810445057
PZKG01000160
Alphaproteobacteria
Cereibacter changlensis JA139 [PZKG]
1540
1614
+
Val
CAC
[ENA]
¡û
>W1810494749
QBFE01000011
Alphaproteobacteria
Sulfitobacter sp. DFL-23 [QBFE]
104244
104170
-
Val
CAC
[ENA]
¡û
>W1810494818
QBFF01000096
Alphaproteobacteria
Pseudosulfitobacter sp. DSM 107133 PIC-76 [QBFF]
135800
135726
-
Val
CAC
[ENA]
¡û
>W1810667429
QJPK01000010
Alphaproteobacteria
Paracoccus sediminilitoris DSL-16 [QJPK]
46115
46189
+
Val
CAC
[ENA]
¡û
>W1810670788
QJSD01000001
Alphaproteobacteria
Primorskyibacter marinus PX7 [QJSD]
585752
585678
-
Val
CAC
[ENA]
¡û
>W1810685668
QKZL01000004
Alphaproteobacteria
Palleronia aestuarii DSM 22009 [QKZL]
214591
214517
-
Val
CAC
[ENA]
¡û
>W1810685993
QKZS01000005
Alphaproteobacteria
Cereibacter changlensis DSM 18774 [QKZS]
7660
7586
-
Val
CAC
[ENA]
¡û
>W1810694732
QLMG01000011
Alphaproteobacteria
Salipiger aestuarii DSM 22011 [QLMG]
57299
57225
-
Val
CAC
[ENA]
¡û
>SRA1052040
SRR035098.128110
454 Sequencing (SRP001819)
193
267
+
Val
CAC
[SRA]
>SRA1053104
SRR035098.338367
454 Sequencing (SRP001819)
172
98
-
Val
CAC
[SRA]
>SRA1053902
SRR035098.532151
454 Sequencing (SRP001819)
330
256
-
Val
CAC
[SRA]
>W10106920
ACYY01000005
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
17976
18050
+
Val
CAC
[ENA]
¡û
>W1510013670
BBPH01000069
Alphaproteobacteria
Paracoccus sp. PAMC 22219 [BBPH]
17555
17481
-
Val
CAC
[ENA]
¡û
>W11109209
ACYY01000005
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
17976
18050
+
Val
CAC
[ENA]
¡û
>W1511482974
JWLK01000005
Alphaproteobacteria
Ruegeria sp. ANG-S4 [JWLK]
476424
476350
-
Val
CAC
[ENA]
¡û
>W1511518705
JXYF01000040
Alphaproteobacteria
Paracoccus sp. S4493 [JXYF]
47550
47624
+
Val
CAC
[ENA]
¡û
>W1511526776
JYGY01000001
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
1106925
1106851
-
Val
CAC
[ENA]
¡û
>W1511564715
LADY01000070
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
54806
54880
+
Val
CAC
[ENA]
¡û
>W11152716
AEYW01000006
Alphaproteobacteria
Ruegeria conchae TW15 [AEYW]
433540
433466
-
Val
CAC
[ENA]
¡û
>W11157626
AFCF01000030
Alphaproteobacteria
Leisingera sp. ANG1 ANG1 [AFCF]
2047
1973
-
Val
CAC
[ENA]
¡û
>W1511698389
LGHS01000073
Alphaproteobacteria
Pseudorhodobacter aquimaris KCTC 23043 [LGHS]
28107
28033
-
Val
CAC
[ENA]
¡û
>W1511698464
LGHU01000086
Alphaproteobacteria
Pseudorhodobacter antarcticus KCTC 23700 [LGHU]
8166
8240
+
Val
CAC
[ENA]
¡û
>W11170467
AFPM01000228
Alphaproteobacteria
Oceanicola sp. S124 [AFPM]
13798
13872
+
Val
CAC
[ENA]
¡û
>C161043345
CP012661
Alphaproteobacteria
Frigidibacter mobilis cai42 [CP012661]
1750257
1750331
+
Val
CAC
[Ensembl]
¡û
>W1610014793
AONH01000016
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
339060
339134
+
Val
CAC
[ENA]
¡û
>W1610092054
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
1210694
1210620
-
Val
CAC
[ENA]
¡û
>W1610092724
CYSA01000025
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [CYSA]
115215
115141
-
Val
CAC
[ENA]
¡û
>W1610092928
CYSE01000005
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
228236
228310
+
Val
CAC
[ENA]
¡û
>W1610851290
LQBP01000001
Alphaproteobacteria
Ruegeria profundi ZGT108 [LQBP]
5806
5732
-
Val
CAC
[ENA]
¡û
>W1610983603
LWER01000133
Alphaproteobacteria
Sulfitobacter sp. HI0027 HI0027 [LWER]
46740
46814
+
Val
CAC
[ENA]
¡û
>W1611013361
LXYM01000012
Alphaproteobacteria
Sulfitobacter geojensis [LXYM]
2377
2303
-
Val
CAC
[ENA]
¡û
>W1710011684
AONH01000016
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
339060
339134
+
Val
CAC
[ENA]
¡û
>W1710015576
AQQU01000004
Alphaproteobacteria
Oceanicola sp. 22II-s10i [AQQU]
93948
94022
+
Val
CAC
[ENA]
¡û
>W1710095411
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
1210694
1210620
-
Val
CAC
[ENA]
¡û
>W1710095979
CYSA01000025
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [CYSA]
115215
115141
-
Val
CAC
[ENA]
¡û
>W1710096183
CYSE01000005
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
228236
228310
+
Val
CAC
[ENA]
¡û
>W1710508080
FMVT01000002
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
1559
1485
-
Val
CAC
[ENA]
¡û
>W1710514280
FNAV01000010
Alphaproteobacteria
Salipiger thiooxidans [FNAV]
174747
174673
-
Val
CAC
[ENA]
¡û
>W1710515169
FNBP01000002
Alphaproteobacteria
Sulfitobacter delicatus [FNBP]
64851
64777
-
Val
CAC
[ENA]
¡û
>W1710516219
FNCL01000001
Alphaproteobacteria
Alloyangia pacifica [FNCL]
97325
97399
+
Val
CAC
[ENA]
¡û
>W1710528690
FNNK01000016
Alphaproteobacteria
Tritonibacter mobilis [FNNK]
70346
70420
+
Val
CAC
[ENA]
¡û
>W1710530099
FNOM01000012
Alphaproteobacteria
Roseicitreum antarcticum [FNOM]
884
810
-
Val
CAC
[ENA]
¡û
>W1710531914
FNPX01000009
Alphaproteobacteria
Jannaschia faecimaris [FNPX]
129773
129847
+
Val
CAC
[ENA]
¡û
>W1710543085
FNZQ01000003
Alphaproteobacteria
Jannaschia helgolandensis [FNZQ]
222474
222548
+
Val
CAC
[ENA]
¡û
>W1710546614
FOCI01000001
Alphaproteobacteria
Loktanella fryxellensis [FOCI]
347593
347519
-
Val
CAC
[ENA]
¡û
>W1710546971
FOCO01000040
Alphaproteobacteria
Pseudorhodobacter antarcticus [FOCO]
20513
20439
-
Val
CAC
[ENA]
¡û
>W1710548376
FODS01000019
Alphaproteobacteria
Salinihabitans flavidus [FODS]
30448
30374
-
Val
CAC
[ENA]
¡û
>W1710549579
FOEP01000020
Alphaproteobacteria
Thalassovita taeanensis taeanense [FOEP]
24764
24690
-
Val
CAC
[ENA]
¡û
>W1710551180
FOFW01000005
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [FOFW]
113807
113733
-
Val
CAC
[ENA]
¡û
>W1710557718
FOLG01000002
Alphaproteobacteria
Tropicimonas isoalkanivorans [FOLG]
303490
303416
-
Val
CAC
[ENA]
¡û
>W1710557719
FOLG01000002
Alphaproteobacteria
Tropicimonas isoalkanivorans [FOLG]
302927
302853
-
Val
CAC
[ENA]
¡û
>W1710559541
FOMS01000007
Alphaproteobacteria
Roseivivax sediminis [FOMS]
209027
208953
-
Val
CAC
[ENA]
¡û
>W1710565143
FORA01000001
Alphaproteobacteria
Jannaschia pohangensis [FORA]
686939
686865
-
Val
CAC
[ENA]
¡û
>W1710571060
FOVP01000010
Alphaproteobacteria
Roseovarius lutimaris [FOVP]
127842
127916
+
Val
CAC
[ENA]
¡û
>W1710583484
FQUV01000002
Alphaproteobacteria
Litoreibacter ascidiaceicola [FQUV]
344022
344096
+
Val
CAC
[ENA]
¡û
>W1710591163
FRBN01000017
Alphaproteobacteria
Roseovarius marisflavi [FRBN]
75389
75463
+
Val
CAC
[ENA]
¡û
>W1710594784
FSRL01000001
Alphaproteobacteria
Vannielia litorea litoreus [FSRL]
1724934
1724860
-
Val
CAC
[ENA]
¡û
>W1710606577
FWXX01000005
Alphaproteobacteria
Tropicibacter naphthalenivorans [FWXX]
229706
229780
+
Val
CAC
[ENA]
¡û
>W1710606889
FWYD01000004
Alphaproteobacteria
Primorskyibacter flagellatus [FWYD]
190157
190083
-
Val
CAC
[ENA]
¡û
>W1710609107
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
48905
48831
-
Val
CAC
[ENA]
¡û
>W1710616739
JFKD01000008
Alphaproteobacteria
Marivita cryptomonadis [JFKD]
1478
1404
-
Val
CAC
[ENA]
¡û
>W1710626829
JPKW01000005
Alphaproteobacteria
Paracoccus sp. SM22M-07 [JPKW]
169101
169027
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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