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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338286 (74 seq.)
>W1711050778
LRRR01000001
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
498618
498692
+
Gln
TTG
[ENA]
¡û
>W1711050779
LRRR01000001
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
498821
498895
+
Gln
TTG
[ENA]
¡û
>W1711135106
LUYN01000106
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
5802
5876
+
Gln
TTG
[ENA]
¡û
>W1711229272
LXYH01000005
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
131840
131766
-
Gln
TTG
[ENA]
¡û
>W131216075
ATVN01000015
Alphaproteobacteria
Pseudorhodobacter ferrugineus DSM 5888 [ATVN]
29863
29789
-
Gln
TTG
[ENA]
¡û
>W1711385833
MEES01000020
Alphaproteobacteria
Paracoccus sp. SCN 68-21 [MEES]
39552
39626
+
Gln
TTG
[ENA]
¡û
>W1711456274
MJAP01000001
Alphaproteobacteria
Natronohydrobacter thiooxidans [MJAP]
25721
25647
-
Gln
TTG
[ENA]
¡û
>C171107677
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
3233364
3233290
-
Gln
TTG
-
¡û
>C171110756
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
196919
196993
+
Gln
TTG
-
¡û
>C016041
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1195091
1195017
-
Gln
TTG
[Ensembl]
¡û
>WENV180013920
FPIC01010466
[FPIC] soil metagenome; Soil
2021
1947
-
Gln
TTG
[ENA]
¢þ
>WENV180041722
LLBZ010343884
[LLBZ] soil metagenome; soil from tomato rhizosphere
2221
2295
+
Gln
TTG
[ENA]
¢þ
>WENV180298767
OBJA01591908
[OBJA] soil metagenome; sediment, water from around vicinity
87
13
-
Gln
TTG
[ENA]
¢þ
>WENV180342618
OBLJ01061932
[OBLJ] soil metagenome; Clay
338
264
-
Gln
TTG
[ENA]
¢þ
>WENV180359705
OBNS01016867
[OBNS] marine metagenome; Seawater
320
246
-
Gln
TTG
[ENA]
¢þ
>WENV180586571
OCOM01133801
[OCOM] marine metagenome; seawater
307
381
+
Gln
TTG
[ENA]
¢þ
>WENV019304
AACY020529827
Marine microbial communities from Global Ocean Sampling (GOS)
4873
4947
+
Gln
TTG
[ENA]
>WENV183732776
PJTX01012837
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
768
842
+
Gln
TTG
[ENA]
¢þ
>WENV183734571
PJTZ01019321
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
583
509
-
Gln
TTG
[ENA]
¢þ
>WENV170176531
CEOS01089466
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
396
322
-
Gln
TTG
[ENA]
¢þ
>WENV170369657
CETR01023446
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
398
324
-
Gln
TTG
[ENA]
¢þ
>WENV170564847
CZPY01000003
[CZPY] metagenome; PAHs-polluted Soil
12068
12142
+
Gln
TTG
[ENA]
¢þ
>WENV170827903
MDSY01138690
[MDSY] marine metagenome; seawater
2767
2841
+
Gln
TTG
[ENA]
¢þ
>PL191000070
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1195091
1195017
-
Gln
TTG
[Ensembl]
¡û
>C181117172
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
1671532
1671606
+
Gln
TTG
-
¡û
>C181190838
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
3205355
3205281
-
Gln
TTG
-
¡û
>C181194175
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
2692231
2692305
+
Gln
TTG
-
¡û
>C191131971
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
2440956
2441030
+
Gln
TTG
-
¡û
>C191159601
CP038439
Alphaproteobacteria
Paracoccus liaowanqingii 2251 [CP038439]
890213
890139
-
Gln
TTG
-
¡û
>C191173502
CP039964
Alphaproteobacteria
Pseudorhodobacter turbinis S12M18 [CP039964]
679541
679467
-
Gln
TTG
-
¡û
>C141006325
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
1386990
1387064
+
Gln
TTG
[Ensembl]
¡û
>C141006352
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
1483067
1482993
-
Gln
TTG
[Ensembl]
¡û
>W1910547067
FZNM01000004
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
28901
28975
+
Gln
TTG
[ENA]
¡û
>W1911245311
NSJZ01000001
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
429294
429220
-
Gln
TTG
[ENA]
¡û
>W1911397921
NWMQ01000012
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
15933
15859
-
Gln
TTG
[ENA]
¡û
>W1911810954
QZCG01000002
Alphaproteobacteria
Paracoccus onubensis 1011MAR3C25 [QZCG]
352352
352278
-
Gln
TTG
[ENA]
¡û
>W1911813226
QZEV01000174
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
324
250
-
Gln
TTG
[ENA]
¡û
>W1911813248
QZEW01000034
Alphaproteobacteria
Paracoccus siganidrum DSM 26381 [QZEW]
29085
29011
-
Gln
TTG
[ENA]
¡û
>W1810426252
PYWA01000003
Alphaproteobacteria
Paracoccus indicus IO390502 [PYWA]
74728
74654
-
Gln
TTG
[ENA]
¡û
>W1810444995
PZKF01000016
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
51165
51239
+
Gln
TTG
[ENA]
¡û
>W1810583970
QEYD01000003
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
120230
120304
+
Gln
TTG
[ENA]
¡û
>W1810667425
QJPK01000006
Alphaproteobacteria
Paracoccus sediminilitoris DSL-16 [QJPK]
195686
195760
+
Gln
TTG
[ENA]
¡û
>W1810684474
QKYL01000001
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
128630
128556
-
Gln
TTG
[ENA]
¡û
>W1810697123
QLUV01000007
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
137868
137942
+
Gln
TTG
[ENA]
¡û
>W1810759459
QPJL01000001
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
139853
139927
+
Gln
TTG
[ENA]
¡û
>W1810862241
QTUJ01000001
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
957990
957916
-
Gln
TTG
[ENA]
¡û
>W1510013678
BBPH01000094
Alphaproteobacteria
Paracoccus sp. PAMC 22219 [BBPH]
34836
34910
+
Gln
TTG
[ENA]
¡û
>C11117055
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
1847295
1847221
-
Gln
TTG
[Ensembl]
¡û
>W1511348640
JRKP01000010
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
39188
39114
-
Gln
TTG
[ENA]
¡û
>W1511348677
JRKQ01000008
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
49497
49423
-
Gln
TTG
[ENA]
¡û
>W1511348729
JRKR01000016
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
36791
36717
-
Gln
TTG
[ENA]
¡û
>W1511348794
JRKS01000054
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
19734
19660
-
Gln
TTG
[ENA]
¡û
>W1511348835
JRKT01000045
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
15320
15246
-
Gln
TTG
[ENA]
¡û
>W1511518700
JXYF01000024
Alphaproteobacteria
Paracoccus sp. S4493 [JXYF]
39695
39621
-
Gln
TTG
[ENA]
¡û
>W1511526785
JYGY01000001
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
279336
279262
-
Gln
TTG
[ENA]
¡û
>W11143061
AEPN01000044
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
17147
17221
+
Gln
TTG
[ENA]
¡û
>W1511698391
LGHS01000076
Alphaproteobacteria
Pseudorhodobacter aquimaris KCTC 23043 [LGHS]
372637
372711
+
Gln
TTG
[ENA]
¡û
>W1511698404
LGHT01000025
Alphaproteobacteria
Pseudorhodobacter wandonensis KCTC 23672 [LGHT]
43954
43880
-
Gln
TTG
[ENA]
¡û
>W1511698502
LGHV01000038
Alphaproteobacteria
Pseudorhodobacter ferrugineus LMG 22047 [LGHV]
28496
28422
-
Gln
TTG
[ENA]
¡û
>W121060001
AJFB01000437
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
503
577
+
Gln
TTG
[ENA]
¡û
>W1610049821
BBFH01000077
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
5731
5657
-
Gln
TTG
[ENA]
¡û
>W1610891907
LRRR01000001
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
498618
498692
+
Gln
TTG
[ENA]
¡û
>W1610891908
LRRR01000001
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
498821
498895
+
Gln
TTG
[ENA]
¡û
>W1610946226
LUYN01000106
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
5802
5876
+
Gln
TTG
[ENA]
¡û
>W1611013142
LXYH01000005
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
131840
131766
-
Gln
TTG
[ENA]
¡û
>W1710046220
BBFH01000077
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
5731
5657
-
Gln
TTG
[ENA]
¡û
>W1710508108
FMVT01000011
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
7515
7441
-
Gln
TTG
[ENA]
¡û
>W1710518955
FNEJ01000003
Alphaproteobacteria
Salipiger marinus marina [FNEJ]
245761
245687
-
Gln
TTG
[ENA]
¡û
>W1710521194
FNGE01000025
Alphaproteobacteria
Paracoccus chinensis [FNGE]
24684
24758
+
Gln
TTG
[ENA]
¡û
>W1710528228
FNNA01000006
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
83188
83262
+
Gln
TTG
[ENA]
¡û
>W1710530096
FNOM01000009
Alphaproteobacteria
Roseicitreum antarcticum [FNOM]
200922
200848
-
Gln
TTG
[ENA]
¡û
>W1710543756
FOAG01000018
Alphaproteobacteria
Roseovarius azorensis [FOAG]
8713
8787
+
Gln
TTG
[ENA]
¡û
>W1710581770
FPKI01000016
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
95576
95650
+
Gln
TTG
[ENA]
¡û
>W1710626836
JPKW01000007
Alphaproteobacteria
Paracoccus sp. SM22M-07 [JPKW]
98070
98144
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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