This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338463 (65 seq.)
>W1711326535
MBFJ01000002
Actinomycetota
Jiangella alba [MBFJ]
405470
405395
-
Thr
CGT
[ENA]
¡û
>W1711343370
MCIG01000007
Actinomycetota
Curtobacterium sp. UCD-KPL2560 [MCIG]
50010
50085
+
Thr
CGT
[ENA]
¡û
>W1711460963
MJGJ01000038
Actinomycetota
Curtobacterium sp. MCBA15_003 [MJGJ]
452885
452960
+
Thr
CGT
[ENA]
¡û
>W1711460989
MJGK01000022
Actinomycetota
Curtobacterium sp. MCBA15_004 [MJGK]
84802
84727
-
Thr
CGT
[ENA]
¡û
>W1711461050
MJGL01000056
Actinomycetota
Curtobacterium sp. MCBA15_005 [MJGL]
8823
8748
-
Thr
CGT
[ENA]
¡û
>W1711461454
MJGU01000023
Actinomycetota
Curtobacterium sp. MMLR14_006 [MJGU]
448442
448517
+
Thr
CGT
[ENA]
¡û
>W1711461467
MJGV01000002
Actinomycetota
Curtobacterium sp. MMLR14_010 [MJGV]
341409
341484
+
Thr
CGT
[ENA]
¡û
>C171063809
CP017580
Actinomycetota
Curtobacterium sp. BH-2-1-1 [CP017580]
2962280
2962355
+
Thr
CGT
-
¡û
>W131055142
ANBG01000167
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
117688
117761
+
Thr
CGT
[ENA]
¡û
>W131055214
ANBH01000287
Actinomycetota
Nocardiopsis chromatogenes YIM 90109 [ANBH]
18832
18759
-
Thr
CGT
[ENA]
¡û
>W131110279
APJN01000041
Actinomycetota
Curtobacterium flaccumfaciens UCD-AKU [APJN]
35482
35557
+
Thr
CGT
[ENA]
¡û
>W131218485
ATXT01000017
Actinomycetota
Humibacter albus DSM 18994 [ATXT]
23824
23899
+
Thr
CGT
[ENA]
¡û
>W131229378
AUGT01000010
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
151775
151700
-
Thr
CGT
[ENA]
¡û
>WENV180108866
OAPI01010278
[OAPI] marine metagenome; ENVO.00002150
72
-1
-
Thr
CGT
[ENA]
¢þ
>WENV180343304
OBLK01002574
[OBLK] soil metagenome; Clay
962
887
-
Thr
CGT
[ENA]
¢þ
>WENV181297767
OFHK01127110
[OFHK] soil metagenome; Clay
276
201
-
Thr
CGT
[ENA]
¢þ
>WENV181297888
OFHL01002847
[OFHL] soil metagenome; Clay
1075
1150
+
Thr
CGT
[ENA]
¢þ
>WENV181401657
OFTX01002240
[OFTX] sludge metagenome; sludge
179
254
+
Thr
CGT
[ENA]
¢þ
>WENV183741512
PJUG01000035
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
56055
56128
+
Thr
CGT
[ENA]
¢þ
>WENV183742726
PJUI01000078
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
4283
4356
+
Thr
CGT
[ENA]
¢þ
>WENV183748025
PPFU01007282
[PPFU] hypolithon metagenome; Antarctic Hypolithon
299
374
+
Thr
CGT
[ENA]
¢þ
>WENV183750517
PPFU01315289
[PPFU] hypolithon metagenome; Antarctic Hypolithon
4169
4244
+
Thr
CGT
[ENA]
¢þ
>C181072217
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
5919503
5919430
-
Thr
CGT
-
¡û
>W09110233
ABUZ01000006
Actinomycetota
Thermomonospora curvata DSM 43183 [ABUZ]
328506
328583
+
Thr
CGT
[ENA]
¡û
>C191127989
CP034593
Actinomycetota
Flaviflexus ciconiae H23T48 [CP034593]
2406630
2406703
+
Thr
CGT
-
¡û
>C191186705
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
3132053
3131979
-
Thr
CGT
-
¡û
>C191212887
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
4681670
4681745
+
Thr
CGT
-
¡û
>W141564504
JIAV01000012
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
325687
325762
+
Thr
CGT
[ENA]
¡û
>W1911681999
QKLC01000010
Actinomycetota
Curtobacterium sp. MCPF17_003 [QKLC]
8807
8733
-
Thr
CGT
[ENA]
¡û
>W1911682028
QKLD01000002
Actinomycetota
Curtobacterium sp. MCPF17_015 [QKLD]
288184
288258
+
Thr
CGT
[ENA]
¡û
>W1911682079
QKLI01000002
Actinomycetota
Curtobacterium sp. MCBD17_030 [QKLI]
197674
197748
+
Thr
CGT
[ENA]
¡û
>W1911682131
QKLJ01000003
Actinomycetota
Curtobacterium sp. MCBD17_023 [QKLJ]
163150
163076
-
Thr
CGT
[ENA]
¡û
>W1911682173
QKLK01000003
Actinomycetota
Curtobacterium sp. MCBD17_029 [QKLK]
162193
162119
-
Thr
CGT
[ENA]
¡û
>W1911685037
QKSD01000009
Actinomycetota
Curtobacterium sp. MCPF17_052 [QKSD]
90526
90452
-
Thr
CGT
[ENA]
¡û
>W1911685122
QKSF01000004
Actinomycetota
Curtobacterium sp. MCPF17_047 [QKSF]
123658
123584
-
Thr
CGT
[ENA]
¡û
>W1911685214
QKSH01000013
Actinomycetota
Curtobacterium sp. MCPF17_021 [QKSH]
10345
10271
-
Thr
CGT
[ENA]
¡û
>W1911685289
QKSJ01000002
Actinomycetota
Curtobacterium sp. MCPF17_018 [QKSJ]
218266
218340
+
Thr
CGT
[ENA]
¡û
>W1911685402
QKSL01000007
Actinomycetota
Curtobacterium sp. MCPF17_001 [QKSL]
71231
71157
-
Thr
CGT
[ENA]
¡û
>W1911685428
QKTK01000001
Actinomycetota
Curtobacterium sp. MCBD17_008 [QKTK]
85730
85656
-
Thr
CGT
[ENA]
¡û
>W1911685644
QKTO01000003
Actinomycetota
Curtobacterium sp. MCBD17_032 [QKTO]
154019
153945
-
Thr
CGT
[ENA]
¡û
>W1911685827
QKTS01000003
Actinomycetota
Curtobacterium sp. MCBD17_021 [QKTS]
157360
157286
-
Thr
CGT
[ENA]
¡û
>W1911738037
QUAL01000018
Actinomycetota
Jiangella rhizosphaerae NEAU-YY265 [QUAL]
41771
41846
+
Thr
CGT
[ENA]
¡û
>W1911823576
QZVR01000016
Actinomycetota
Nocardioides ferulae SZ4R5S7 [QZVR]
1931
1856
-
Thr
CGT
[ENA]
¡û
>W1810675565
QKLG01000003
Actinomycetota
Curtobacterium sp. MCJR17_043 [QKLG]
158485
158411
-
Thr
CGT
[ENA]
¡û
>W1810675599
QKLH01000002
Actinomycetota
Curtobacterium sp. MCLR17_043 [QKLH]
92543
92469
-
Thr
CGT
[ENA]
¡û
>W1810681060
QKSO01000016
Actinomycetota
Curtobacterium sp. MCSS17_006 [QKSO]
91100
91026
-
Thr
CGT
[ENA]
¡û
>W1810681161
QKSQ01000011
Actinomycetota
Curtobacterium sp. MCSS17_016 [QKSQ]
90860
90786
-
Thr
CGT
[ENA]
¡û
>W1810681530
QKSY01000008
Actinomycetota
Curtobacterium sp. MCLR17_054 [QKSY]
63686
63760
+
Thr
CGT
[ENA]
¡û
>W1810681679
QKTB01000010
Actinomycetota
Curtobacterium sp. MCLR17_045 [QKTB]
10294
10220
-
Thr
CGT
[ENA]
¡û
>W1810681720
QKTC01000010
Actinomycetota
Curtobacterium sp. MCLR17_044 [QKTC]
58728
58802
+
Thr
CGT
[ENA]
¡û
>W1810681758
QKTD01000002
Actinomycetota
Curtobacterium sp. MCLR17_042 [QKTD]
164589
164515
-
Thr
CGT
[ENA]
¡û
>W1810681843
QKTF01000001
Actinomycetota
Curtobacterium sp. MCLR17_039 [QKTF]
186552
186478
-
Thr
CGT
[ENA]
¡û
>W1810681995
QKTI01000003
Actinomycetota
Curtobacterium sp. MCLR17_032 [QKTI]
123069
122995
-
Thr
CGT
[ENA]
¡û
>C10113138
CP001738
Actinomycetota
Thermomonospora curvata DSM 43183 [CP001738]
5141674
5141597
-
Thr
CGT
[Ensembl]
¡û
>W1511509121
JXQU01000016
Actinomycetota
Curtobacterium flaccumfaciens MEB126 [JXQU]
163598
163523
-
Thr
CGT
[ENA]
¡û
>W1511594768
LBMC01000011
Actinomycetota
Jiangella alkaliphila KCTC 19222 [LBMC]
3905
3980
+
Thr
CGT
[ENA]
¡û
>W1610067595
BCQR01000117
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
22481
22406
-
Thr
CGT
[ENA]
¡û
>W1610588291
LDQC01000114
Actinomycetota
Curtobacterium luteum [LDQC]
9104
9179
+
Thr
CGT
[ENA]
¡û
>W1710064968
BCQR01000117
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
22481
22406
-
Thr
CGT
[ENA]
¡û
>W1710526368
FNKG01000002
Actinomycetota
Curtobacterium sp. UNCCL20 [FNKG]
641877
641952
+
Thr
CGT
[ENA]
¡û
>W1710534548
FNRY01000001
Actinomycetota
Microbacterium humi [FNRY]
2212181
2212256
+
Thr
CGT
[ENA]
¡û
>W1710537889
FNUC01000004
Actinomycetota
Jiangella alba [FNUC]
1540082
1540157
+
Thr
CGT
[ENA]
¡û
>W1710570645
FOVH01000004
Actinomycetota
Actinomadura madurae [FOVH]
274670
274597
-
Thr
CGT
[ENA]
¡û
>W1710588518
FQZK01000012
Actinomycetota
Nocardiopsis flavescens [FQZK]
205301
205376
+
Thr
CGT
[ENA]
¡û
>W1710707571
LDQC01000114
Actinomycetota
Curtobacterium luteum [LDQC]
9104
9179
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK