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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338489 (5 seq.)
>W1710818222
LKNB01000066
Rhodothermota
Rhodothermaceae bacterium Tc-Br11_B2g6_7 [LKNB]
15341
15266
-
Trp
CCA
[ENA]
¡û
>WENV170000844
AFSR01006332
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
10
85
+
Trp
CCA
[ENA]
¡û
>WENV170681602
LFFM01001606
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
15341
15266
-
Trp
CCA
[ENA]
¡û
>WENV11101187
AFSR01006332
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
10
85
+
Trp
CCA
[ENA]
¡û
>W1610682521
LKNB01000066
Rhodothermota
Rhodothermaceae bacterium Tc-Br11_B2g6_7 [LKNB]
15341
15266
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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