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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338491 (36 seq.)
>W1710891800
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
194198
194272
+
Met
CAT
[ENA]
¡û
>W1710891806
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
91969
91895
-
Met
CAT
[ENA]
¡û
>W1710927092
LOEZ01000040
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
57239
57313
+
Met
CAT
[ENA]
¡û
>W1711071243
LSGP01000013
Bacillota
Anaerosporomusa subterranea [LSGP]
157251
157325
+
Met
CAT
[ENA]
¡û
>W131171191
ARGA01000060
Bacillota
Anaeromusa acidaminophila DSM 3853 [ARGA]
171511
171585
+
Met
CAT
[ENA]
¡û
>W1711342455
MCHF01000034
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
21972
21898
-
Met
CAT
[ENA]
¡û
>W131162528
AQYY01000005
Bacillota
Dehalobacter sp. FTH1 [AQYY]
173611
173685
+
Met
CAT
[ENA]
¡û
>WENV180015429
FQKF010661315
[FQKF] soil metagenome; Soil
72
1
-
Ile2
CAT
[ENA]
¢þ
>W141088304
AUUR01000130
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
6968
6894
-
Met
CAT
[ENA]
¡û
>W141246557
CANE01000011
Bacillota
Dehalobacter restrictus E1 [CANE]
64272
64198
-
Met
CAT
[ENA]
¡û
>W141246683
CANF01002343
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
64272
64198
-
Met
CAT
[ENA]
¡û
>WENV182883877
OKSB01054624
[OKSB] human gut metagenome; faeces
360
434
+
Ile2
CAT
[ENA]
¢þ
>WENV183253358
OLRI01060541
[OLRI] human gut metagenome; faeces
212
286
+
Ile2
CAT
[ENA]
¢þ
>WENV183331342
OLWB01111117
[OLWB] human gut metagenome; faeces
202
276
+
Ile2
CAT
[ENA]
¢þ
>WENV183745827
POVV01001090
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
227
153
-
Ile2
CAT
[ENA]
¢þ
>WENV183746212
POVV01014773
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
359
433
+
Ile2
CAT
[ENA]
¢þ
>WENV183746270
POVV01021685
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
477
403
-
Ile2
CAT
[ENA]
¢þ
>WENV170659037
JXWO01000121
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
20587
20661
+
Met
CAT
[ENA]
¢þ
>WENV170967193
MTKW01000487
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
8444
8518
+
Met
CAT
[ENA]
¢þ
>C191002379
AP018449
Bacillota
Methylomusa anaerophila MMFC1 [AP018449]
3839525
3839599
+
Met
CAT
-
¡û
>C141011735
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
634014
634088
+
Met
CAT
[Ensembl]
¡û
>W1910647173
LXPC01000013
Bacillota
Dehalobacter sp. MCB1 [LXPC]
90696
90770
+
Met
CAT
[ENA]
¡û
>W1911608677
PNXX01000001
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
607416
607342
-
Met
CAT
[ENA]
¡û
>W1911613551
POSF01000011
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
263160
263086
-
Met
CAT
[ENA]
¡û
>C151038585
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
2804159
2804085
-
Met
CAT
[Ensembl]
¡û
>C151074843
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
2210060
2210134
+
Met
CAT
[Ensembl]
¡û
>C11120641
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2443047
2442973
-
Met
CAT
[Ensembl]
¡û
>W121101734
AKVN01000037
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
134934
135008
+
Met
CAT
[ENA]
¡û
>C131008528
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2568258
2568184
-
Met
CAT
[Ensembl]
¡û
>C131008579
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2595875
2595801
-
Met
CAT
[Ensembl]
¡û
>W1610752165
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
194198
194272
+
Met
CAT
[ENA]
¡û
>W1610752171
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
91969
91895
-
Met
CAT
[ENA]
¡û
>W1610784634
LOEZ01000040
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
57239
57313
+
Met
CAT
[ENA]
¡û
>W1610910503
LSGP01000013
Bacillota
Anaerosporomusa subterranea [LSGP]
157251
157325
+
Met
CAT
[ENA]
¡û
>W1710515411
FNBU01000005
Bacillota
Sporolituus thermophilus DSM 23256 [FNBU]
58915
58989
+
Met
CAT
[ENA]
¡û
>W1710605826
FWXI01000014
Bacillota
Sporomusa malonica [FWXI]
77183
77257
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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