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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338531 (121 seq.)
>W1710809746
LKEU01000014
Bacillota
Acetobacterium wieringae [LKEU]
6154
6228
+
Gly
GCC
[ENA]
¡û
>W1710809755
LKEU01000017
Bacillota
Acetobacterium wieringae [LKEU]
78682
78756
+
Gly
GCC
[ENA]
¡û
>W1710926254
LOED01000009
Bacillota
Fervidicola ferrireducens [LOED]
51915
51989
+
Gly
GCC
[ENA]
¡û
>W1710926325
LOEE01000041
Bacillota
Thermotalea metallivorans [LOEE]
58294
58220
-
Gly
GCC
[ENA]
¡û
>W1710926360
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
1190
1264
+
Gly
GCC
[ENA]
¡û
>W1710926376
LOEE01000098
Bacillota
Thermotalea metallivorans [LOEE]
958
884
-
Gly
GCC
[ENA]
¡û
>W1711048206
LRPL01000098
Bacillota
Anaerococcus hydrogenalis [LRPL]
29319
29245
-
Gly
GCC
[ENA]
¡û
>W1711377675
MDZD01000009
Bacillota
Sulfobacillus thermosulfidooxidans [MDZD]
46201
46127
-
Gly
GCC
[ENA]
¡û
>W1711629258
MPOT01000079
Bacillota
Tepidanaerobacter sp. EBM-38 [MPOT]
40500
40426
-
Gly
GCC
[ENA]
¡û
>W1711629630
MPPE01000036
Bacillota
Tepidanaerobacter sp. EBM-49 [MPPE]
147944
147870
-
Gly
GCC
[ENA]
¡û
>WENV180346004
OBLN01018873
[OBLN] sediment metagenome; sediment
1324
1398
+
Gly
GCC
[ENA]
¢þ
>WENV180402503
OBRP01002588
[OBRP] human gut metagenome; ENVO:feces
978
1052
+
Gly
GCC
[ENA]
¢þ
>WENV180504693
OCAN01033962
[OCAN] human gut metagenome; faeces
340
414
+
Gly
GCC
[ENA]
¢þ
>W141150086
AXAC01000024
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
745
671
-
Gly
GCC
[ENA]
¡û
>W141150096
AXAC01000033
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
49773
49699
-
Gly
GCC
[ENA]
¡û
>WENV182818904
OJZZ01000756
[OJZZ] human gut metagenome; human gut
539
613
+
Gly
GCC
[ENA]
¢þ
>WENV183513770
OMKS01007762
[OMKS] sediment metagenome; hot spring sediment
5368
5442
+
Gly
GCC
[ENA]
¢þ
>WENV183705098
PDWI01001019
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
45312
45386
+
Gly
GCC
[ENA]
¢þ
>WENV183705998
PDWI01002862
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
25307
25381
+
Gly
GCC
[ENA]
¢þ
>WENV183706520
PDWI01004545
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
277
203
-
Gly
GCC
[ENA]
¢þ
>WENV183706522
PDWI01004545
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
98
24
-
Gly
GCC
[ENA]
¢þ
>WENV183706765
PDWI01005437
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
14600
14526
-
Gly
GCC
[ENA]
¢þ
>WENV183706845
PDWI01005719
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3203
3277
+
Gly
GCC
[ENA]
¢þ
>WENV183707064
PDWI01006561
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
14312
14238
-
Gly
GCC
[ENA]
¢þ
>WENV183707099
PDWI01006686
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
183
109
-
Gly
GCC
[ENA]
¢þ
>WENV183707303
PDWI01007801
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2
76
+
Gly
GCC
[ENA]
¢þ
>WENV183707431
PDWI01008381
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
12032
11958
-
Gly
GCC
[ENA]
¢þ
>WENV183707743
PDWI01010359
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1212
1138
-
Gly
GCC
[ENA]
¢þ
>WENV183708212
PDWI01013901
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1148
1074
-
Gly
GCC
[ENA]
¢þ
>WENV183708215
PDWI01013901
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
780
706
-
Gly
GCC
[ENA]
¢þ
>WENV183708690
PDWI01018821
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6475
6401
-
Gly
GCC
[ENA]
¢þ
>WENV183710471
PDWI01047299
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
185
111
-
Gly
GCC
[ENA]
¢þ
>WENV183710486
PDWI01047504
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
397
471
+
Gly
GCC
[ENA]
¢þ
>WENV183711027
PDWI01059227
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
104
178
+
Gly
GCC
[ENA]
¢þ
>WENV183711768
PDWI01079863
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2587
2513
-
Gly
GCC
[ENA]
¢þ
>WENV183711769
PDWI01079863
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2485
2411
-
Gly
GCC
[ENA]
¢þ
>WENV183711803
PDWI01081014
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
104
178
+
Gly
GCC
[ENA]
¢þ
>WENV183713033
PDWI01122223
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1682
1756
+
Gly
GCC
[ENA]
¢þ
>WENV183713202
PDWI01128955
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1775
1701
-
Gly
GCC
[ENA]
¢þ
>WENV183713300
PDWI01133259
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
153
227
+
Gly
GCC
[ENA]
¢þ
>WENV183713450
PDWI01138982
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1606
1680
+
Gly
GCC
[ENA]
¢þ
>WENV183714382
PDWI01181020
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
20
94
+
Gly
GCC
[ENA]
¢þ
>WENV183717474
PDWJ01000965
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
766
840
+
Gly
GCC
[ENA]
¢þ
>WENV183717632
PDWJ01001256
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
95
21
-
Gly
GCC
[ENA]
¢þ
>WENV183717836
PDWJ01001725
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
648
722
+
Gly
GCC
[ENA]
¢þ
>WENV183717889
PDWJ01001878
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
45639
45565
-
Gly
GCC
[ENA]
¢þ
>WENV183719240
PDWJ01010992
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6190
6264
+
Gly
GCC
[ENA]
¢þ
>WENV183719427
PDWJ01014008
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
192
118
-
Gly
GCC
[ENA]
¢þ
>WENV183720947
PDWJ01050270
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2005
2079
+
Gly
GCC
[ENA]
¢þ
>WENV183721512
PDWJ01073250
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1457
1531
+
Gly
GCC
[ENA]
¢þ
>WENV183722077
PDWJ01104429
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1263
1189
-
Gly
GCC
[ENA]
¢þ
>WENV183722471
PDWJ01131654
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1036
962
-
Gly
GCC
[ENA]
¢þ
>WENV170561530
CZCA01012806
[CZCA] anaerobic digester metagenome; anaerobic digester
5166
5240
+
Gly
GCC
[ENA]
¢þ
>WENV170562023
CZCB01000644
[CZCB] anaerobic digester metagenome; anaerobic digester
169099
169173
+
Gly
GCC
[ENA]
¢þ
>WENV170562467
CZCB01002978
[CZCB] anaerobic digester metagenome; anaerobic digester
10372
10298
-
Gly
GCC
[ENA]
¢þ
>WENV170674864
LCWY01012344
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
386
460
+
Gly
GCC
[ENA]
¢þ
>WENV170689775
LFRM01310959
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
8728
8802
+
Gly
GCC
[ENA]
¢þ
>WENV170690145
LFRM01326885
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
66218
66144
-
Gly
GCC
[ENA]
¢þ
>WENV170690315
LFRM01335353
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2229
2155
-
Gly
GCC
[ENA]
¢þ
>WENV170719437
LSQX01114630
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
164
90
-
Gly
GCC
[ENA]
¢þ
>WENV170719653
LSQX01122037
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
29244
29170
-
Gly
GCC
[ENA]
¢þ
>WENV170720061
LSQX01139261
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
43
117
+
Gly
GCC
[ENA]
¢þ
>WENV170721789
LSQX01203645
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
167548
167622
+
Gly
GCC
[ENA]
¢þ
>WENV170721953
LSQX01210723
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
17264
17338
+
Gly
GCC
[ENA]
¢þ
>WENV170727107
LSQX01404991
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
16712
16638
-
Gly
GCC
[ENA]
¢þ
>WENV170779387
LZQN01004561
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
111
37
-
Gly
GCC
[ENA]
¢þ
>WENV170968425
MTKW01009057
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2459
2385
-
Gly
GCC
[ENA]
¢þ
>WENV170968501
MTKW01010239
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6383
6309
-
Gly
GCC
[ENA]
¢þ
>WENV170969865
MTKW01042412
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
244
318
+
Gly
GCC
[ENA]
¢þ
>C191064398
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
7094
7168
+
Gly
GCC
-
¡û
>C191064428
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3808337
3808411
+
Gly
GCC
-
¡û
>W141561171
JHYF01000010
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
89739
89665
-
Gly
GCC
[ENA]
¡û
>W141619918
JJMM01000018
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
1402
1476
+
Gly
GCC
[ENA]
¡û
>W1911718407
QQWI01000012
Bacillota
Fusibacter sp. A1 [QQWI]
6882
6956
+
Gly
GCC
[ENA]
¡û
>W1911718441
QQWI01000015
Bacillota
Fusibacter sp. A1 [QQWI]
4704
4778
+
Gly
GCC
[ENA]
¡û
>W1911726622
QSNL01000022
Bacillota
Thermoanaerobacteraceae bacterium SP2 [QSNL]
15195
15121
-
Gly
GCC
[ENA]
¡û
>W1810609744
QGUD01000002
Bacillota
Eubacterium limosum 8486cho [QGUD]
4839
4765
-
Gly
GCC
[ENA]
¡û
>W1810609771
QGUD01000016
Bacillota
Eubacterium limosum 8486cho [QGUD]
75378
75304
-
Gly
GCC
[ENA]
¡û
>W1810721071
QNRS01000001
Bacillota
Garciella nitratireducens GHB3 [QNRS]
205459
205385
-
Gly
GCC
[ENA]
¡û
>C151024077
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
193917
193991
+
Gly
GCC
[Ensembl]
¡û
>C151024101
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
1860945
1860871
-
Gly
GCC
[Ensembl]
¡û
>ENV09002250
ACXJ01012083
Mine drainage metagenome Contig1
297
371
+
Gly
GCC
[ENA]
¡û
>W10105747
ACXU01000005
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
42967
43041
+
Gly
GCC
[ENA]
¡û
>W10105765
ACXU01000015
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
111367
111293
-
Gly
GCC
[ENA]
¡û
>W11108067
ACXU01000005
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
42967
43041
+
Gly
GCC
[ENA]
¡û
>W11108085
ACXU01000015
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
111367
111293
-
Gly
GCC
[ENA]
¡û
>W1510725110
CXYU01000021
Bacillota
Clostridiales bacterium mt11 [CXYU]
40442
40368
-
Gly
GCC
[ENA]
¡û
>W1510725117
CXYU01000021
Bacillota
Clostridiales bacterium mt11 [CXYU]
39349
39275
-
Gly
GCC
[ENA]
¡û
>W1510725133
CXYU01000029
Bacillota
Clostridiales bacterium mt11 [CXYU]
31390
31316
-
Gly
GCC
[ENA]
¡û
>C11122566
CP002728
Bacillota
Tepidanaerobacter acetatoxydans Re1 [CP002728]
722897
722971
+
Gly
GCC
[Ensembl]
¡û
>W1610061632
BCMU01000005
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
324921
324847
-
Gly
GCC
[ENA]
¡û
>C131020948
HF563609
Bacillota
Tepidanaerobacter acetatoxydans Re1 [HF563609]
723464
723538
+
Gly
GCC
-
¡û
>W1610605141
LFRQ01000106
Bacillota
Clostridia bacterium DTU022 [LFRQ]
66218
66144
-
Gly
GCC
[ENA]
¡û
>W1610605914
LFSJ01000177
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
8728
8802
+
Gly
GCC
[ENA]
¡û
>W1610606063
LFSN01000047
Bacillota
Clostridia bacterium DTU030 [LFSN]
13423
13349
-
Gly
GCC
[ENA]
¡û
>W1610606071
LFSN01000124
Bacillota
Clostridia bacterium DTU030 [LFSN]
1386
1460
+
Gly
GCC
[ENA]
¡û
>W1610606136
LFSP01000032
Bacillota
Clostridia bacterium DTU025 [LFSP]
116230
116156
-
Gly
GCC
[ENA]
¡û
>W1610606355
LFSU01000081
Bacillota
Clostridia bacterium DTU014 [LFSU]
2229
2155
-
Gly
GCC
[ENA]
¡û
>W1610783747
LOED01000009
Bacillota
Fervidicola ferrireducens [LOED]
51915
51989
+
Gly
GCC
[ENA]
¡û
>W1610783818
LOEE01000041
Bacillota
Thermotalea metallivorans [LOEE]
58294
58220
-
Gly
GCC
[ENA]
¡û
>W1610783853
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
1190
1264
+
Gly
GCC
[ENA]
¡û
>W1610783869
LOEE01000098
Bacillota
Thermotalea metallivorans [LOEE]
958
884
-
Gly
GCC
[ENA]
¡û
>W1610889335
LRPL01000098
Bacillota
Anaerococcus hydrogenalis [LRPL]
29319
29245
-
Gly
GCC
[ENA]
¡û
>W1710059297
BCMU01000005
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
324921
324847
-
Gly
GCC
[ENA]
¡û
>W1710553656
FOHU01000009
Bacillota
Natronincola peptidivorans [FOHU]
144607
144533
-
Gly
GCC
[ENA]
¡û
>W1710553660
FOHU01000012
Bacillota
Natronincola peptidivorans [FOHU]
6850
6924
+
Gly
GCC
[ENA]
¡û
>W1710554117
FOIF01000006
Bacillota
Anaerobranca gottschalkii DSM 13577 [FOIF]
54070
54144
+
Gly
GCC
[ENA]
¡û
>W1710554134
FOIF01000021
Bacillota
Anaerobranca gottschalkii DSM 13577 [FOIF]
24407
24481
+
Gly
GCC
[ENA]
¡û
>W1710571978
FOWI01000006
Bacillota
Eubacterium callanderi [FOWI]
6096
6170
+
Gly
GCC
[ENA]
¡û
>W1710571994
FOWI01000009
Bacillota
Eubacterium callanderi [FOWI]
197027
197101
+
Gly
GCC
[ENA]
¡û
>W1710589647
FRAI01000013
Bacillota
Anaerobranca californiensis DSM 14826 [FRAI]
46589
46663
+
Gly
GCC
[ENA]
¡û
>W1710589657
FRAI01000016
Bacillota
Anaerobranca californiensis DSM 14826 [FRAI]
30976
31050
+
Gly
GCC
[ENA]
¡û
>W1710591276
FRBP01000002
Bacillota
Eubacterium callanderi [FRBP]
173267
173193
-
Gly
GCC
[ENA]
¡û
>W1710591286
FRBP01000004
Bacillota
Eubacterium callanderi [FRBP]
5890
5964
+
Gly
GCC
[ENA]
¡û
>W1710592694
FRCR01000001
Bacillota
Caldanaerovirga acetigignens [FRCR]
267164
267238
+
Gly
GCC
[ENA]
¡û
>W1710600850
FUWV01000004
Bacillota
Garciella nitratireducens DSM 15102 [FUWV]
83626
83552
-
Gly
GCC
[ENA]
¡û
>W1710726461
LFRQ01000106
Bacillota
Clostridia bacterium DTU022 [LFRQ]
66218
66144
-
Gly
GCC
[ENA]
¡û
>W1710727201
LFSJ01000177
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
8728
8802
+
Gly
GCC
[ENA]
¡û
>W1710727350
LFSN01000047
Bacillota
Clostridia bacterium DTU030 [LFSN]
13423
13349
-
Gly
GCC
[ENA]
¡û
>W1710727358
LFSN01000124
Bacillota
Clostridia bacterium DTU030 [LFSN]
1386
1460
+
Gly
GCC
[ENA]
¡û
>W1710727642
LFSU01000081
Bacillota
Clostridia bacterium DTU014 [LFSU]
2229
2155
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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