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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338555 (9 seq.)
>WENV170023746
BCQL01002187
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
4001
4076
+
Glu
CTC
[ENA]
¡û
>WENV170023747
BCQL01002187
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
4252
4327
+
Glu
CTC
[ENA]
¡û
>WENV170024264
BCQL01035247
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
569
642
+
Glu
CTC
[ENA]
¡û
>W1810759021
QPJC01000018
Actinomycetota
Halopolyspora algeriensis CECT 8575 [QPJC]
41514
41587
+
Glu
CTC
[ENA]
¡û
>W1810759022
QPJC01000018
Actinomycetota
Halopolyspora algeriensis CECT 8575 [QPJC]
41700
41773
+
Glu
CTC
[ENA]
¡û
>W2010691974
JACGWZ010000001
Actinomycetota
Saccharopolyspora lacisalsi DSM 45975 [JACGWZ]
525733
525806
+
Glu
CTC
[ENA]
¡û
>W2010691975
JACGWZ010000001
Actinomycetota
Saccharopolyspora lacisalsi DSM 45975 [JACGWZ]
525983
526056
+
Glu
CTC
[ENA]
¡û
>W2012021533
VFPI01000001
Actinomycetota
Halopolyspora algeriensis DSM 46680 [VFPI]
1463089
1463016
-
Glu
CTC
[ENA]
¡û
>W2012021534
VFPI01000001
Actinomycetota
Halopolyspora algeriensis DSM 46680 [VFPI]
1462903
1462830
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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