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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338583 (74 seq.)
>W1711170205
LWAF01000007
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
46291
46217
-
Val
GAC
[ENA]
¡û
>W131193868
ASPL01000007
Thermotogota
Thermotogota bacterium JGI 0000106-O11 JGI 0000106-O11 [ASPL]
15370
15296
-
Val
GAC
[ENA]
¡û
>C025664
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1403906
1403832
-
Val
GAC
-
¡û
>C025784
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1388363
1388437
+
Val
GAC
[Ensembl]
¡û
>w019731
AAUK01000006
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
377
301
-
Val
GAC
[ENA]
¡û
>WENV180014059
FPIC01039354
[FPIC] soil metagenome; Soil
663
589
-
Val
GAC
[ENA]
¢þ
>W141070781
ASGQ01000015
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
16024
16098
+
Val
GAC
[ENA]
¡û
>W141082648
AUNF01000018
Thermotogota
Thermotoga sp. A7A [AUNF]
23693
23767
+
Val
GAC
[ENA]
¡û
>WENV181226112
OFDK01000054
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
25959
26033
+
Val
GAC
[ENA]
¢þ
>WENV181285321
OFGS01000002
[OFGS] hot springs metagenome; Water and soil
285842
285768
-
Val
GAC
[ENA]
¢þ
>WENV181408171
OGCH01000840
[OGCH] hot springs metagenome; hot springs
2114
2040
-
Val
GAC
[ENA]
¢þ
>WENV181408924
OGCH01023979
[OGCH] hot springs metagenome; hot springs
214
288
+
Val
GAC
[ENA]
¢þ
>C08004994
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1229171
1229100
-
Val
GAC
[Ensembl]
¡û
>C08011008
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
1809178
1809252
+
Val
GAC
[Ensembl]
¡û
>C08010897
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1452804
1452878
+
Val
GAC
[Ensembl]
¡û
>WENV170675715
LDZQ01000371
[LDZQ] terrestrial metagenome; oil reservoir sample I2
47172
47246
+
Val
GAC
[ENA]
¢þ
>WENV170676070
LDZR01000710
[LDZR] terrestrial metagenome; oil reservoir sample K2
1100
1174
+
Val
GAC
[ENA]
¢þ
>WENV170676435
LDZR01002678
[LDZR] terrestrial metagenome; oil reservoir sample K2
47172
47246
+
Val
GAC
[ENA]
¢þ
>WENV170678992
LDZU01006201
[LDZU] terrestrial metagenome; oil reservoir sample SB2
3394
3468
+
Val
GAC
[ENA]
¢þ
>WENV170779374
LZQN01003808
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
759
833
+
Val
GAC
[ENA]
¢þ
>W09106545
AAWB01000003
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
11048
11122
+
Val
GAC
[ENA]
¡û
>W09107422
ABIJ01000006
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
85658
85732
+
Val
GAC
[ENA]
¡û
>W09112214
ABXR01000008
Thermotogota
Marinitoga piezophila KA3 [ABXR]
41352
41278
-
Val
GAC
[ENA]
¡û
>W09113939
ABZD01000008
Thermotogota
Kosmotoga olearia TBF 19.5.1 [ABZD]
110648
110722
+
Val
GAC
[ENA]
¡û
>W141561621
JHYP01000001
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
519641
519567
-
Val
GAC
[ENA]
¡û
>W141778853
JONI01000005
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
347917
347991
+
Val
GAC
[ENA]
¡û
>C141000344
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
1844334
1844408
+
Val
GAC
-
¡û
>C141000403
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
1250291
1250217
-
Val
GAC
-
¡û
>C141011525
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1411344
1411418
+
Val
GAC
-
¡û
>W1910573575
JPMH01000019
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
15656
15730
+
Val
GAC
[ENA]
¡û
>W1910635462
LNDD01000004
Thermotogota
Thermotoga sp. SG1 [LNDD]
404285
404211
-
Val
GAC
[ENA]
¡û
>W1910635495
LNDE01000001
Thermotogota
Thermotoga sp. KOL6 [LNDE]
354924
354850
-
Val
GAC
[ENA]
¡û
>C09106813
CP001634
Thermotogota
Kosmotoga olearia TBF 19.5.1 [CP001634]
1842197
1842123
-
Val
GAC
[Ensembl]
¡û
>C09110643
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
1167973
1168047
+
Val
GAC
[Ensembl]
¡û
>C151001645
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
1840079
1840153
+
Val
GAC
-
¡û
>C151004274
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1429244
1429318
+
Val
GAC
[Ensembl]
¡û
>C151004316
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1380256
1380330
+
Val
GAC
[Ensembl]
¡û
>C151030631
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
1439040
1439114
+
Val
GAC
[Ensembl]
¡û
>C151074624
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1393894
1393820
-
Val
GAC
[Ensembl]
¡û
>C151076978
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1403922
1403848
-
Val
GAC
[Ensembl]
¡û
>C151077024
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1403922
1403848
-
Val
GAC
[Ensembl]
¡û
>C151078461
CP011232
Thermotogota
Kosmotoga pacifica SLHLJ1 [CP011232]
725322
725396
+
Val
GAC
[Ensembl]
¡û
>W10105828
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
231530
231456
-
Val
GAC
[ENA]
¡û
>C10113496
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1412615
1412689
+
Val
GAC
[Ensembl]
¡û
>W11108148
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
231530
231456
-
Val
GAC
[ENA]
¡û
>W1511355446
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1742534
1742460
-
Val
GAC
[ENA]
¡û
>W11180808
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
51421
51347
-
Val
GAC
[ENA]
¡û
>C121009905
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
1455661
1455587
-
Val
GAC
[Ensembl]
¡û
>C161005082
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
543284
543358
+
Val
GAC
[Ensembl]
¡û
>C161035007
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
29378
29304
-
Val
GAC
[Ensembl]
¡û
>C161071292
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
1497845
1497771
-
Val
GAC
[Ensembl]
¡û
>W121062197
AJII01000011
Thermotogota
Thermotoga sp. EMP [AJII]
309890
309964
+
Val
GAC
[ENA]
¡û
>W121010816
AGJO01000002
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
150424
150498
+
Val
GAC
[ENA]
¡û
>C131012514
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1403924
1403850
-
Val
GAC
-
¡û
>W1610520968
JGCK01000064
Thermotogota
Kosmotoga sp. DU53 [JGCK]
22726
22652
-
Val
GAC
[ENA]
¡û
>W1610540329
JSFG01000009
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
16460
16534
+
Val
GAC
[ENA]
¡û
>W1610540387
JSFH01000009
Thermotogota
Thermotoga sp. Mc24 [JSFH]
121116
121190
+
Val
GAC
[ENA]
¡û
>W1610540421
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
15948
16022
+
Val
GAC
[ENA]
¡û
>W1610540491
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
266042
265968
-
Val
GAC
[ENA]
¡û
>W1610612517
LGEV01000004
Thermotogota
Thermotoga sp. 50_64 [LGEV]
47172
47246
+
Val
GAC
[ENA]
¡û
>W1610612890
LGFF01000089
Thermotogota
Pseudothermotoga lettingae [LGFF]
1100
1174
+
Val
GAC
[ENA]
¡û
>W1610612940
LGFH01000002
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
47172
47246
+
Val
GAC
[ENA]
¡û
>W1610614314
LGGZ01000032
Thermotogota
Thermotogales bacterium 46_20 [LGGZ]
3394
3468
+
Val
GAC
[ENA]
¡û
>W1710517586
FNDL01000003
Thermotogota
Fervidobacterium changbaicum [FNDL]
106910
106836
-
Val
GAC
[ENA]
¡û
>W1710593364
FRDJ01000011
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
27421
27347
-
Val
GAC
[ENA]
¡û
>W1710617218
JGCK01000064
Thermotogota
Kosmotoga sp. DU53 [JGCK]
22726
22652
-
Val
GAC
[ENA]
¡û
>W1710643350
JSFG01000009
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
16460
16534
+
Val
GAC
[ENA]
¡û
>W1710643408
JSFH01000009
Thermotogota
Thermotoga sp. Mc24 [JSFH]
121116
121190
+
Val
GAC
[ENA]
¡û
>W1710643442
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
15948
16022
+
Val
GAC
[ENA]
¡û
>W1710643512
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
266042
265968
-
Val
GAC
[ENA]
¡û
>W1710733915
LGEV01000004
Thermotogota
Thermotoga sp. 50_64 [LGEV]
47172
47246
+
Val
GAC
[ENA]
¡û
>W1710734172
LGFF01000089
Thermotogota
Pseudothermotoga lettingae [LGFF]
1100
1174
+
Val
GAC
[ENA]
¡û
>W1710734222
LGFH01000002
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
47172
47246
+
Val
GAC
[ENA]
¡û
>W1710735397
LGGZ01000032
Thermotogota
Thermotogales bacterium 46_20 [LGGZ]
3394
3468
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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