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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338635 (65 seq.)
>W1710777845
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
609448
609522
+
Thr
GGT
[ENA]
¡û
>W1710777898
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
582672
582746
+
Thr
GGT
[ENA]
¡û
>W1710892074
LNDJ01000118
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
887
813
-
Thr
GGT
[ENA]
¡û
>W1710915850
LNUO01000034
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
4899
4973
+
Thr
GGT
[ENA]
¡û
>W1711227863
LXWA01000020
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
58165
58239
+
Thr
GGT
[ENA]
¡û
>W1711682966
MRYB01000009
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
123226
123300
+
Thr
GGT
[ENA]
¡û
>C171131061
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
573343
573417
+
Thr
GGT
-
¡û
>W131180559
ARNF01000028
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
12284
12358
+
Thr
GGT
[ENA]
¡û
>C015803
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
478733
478807
+
Thr
GGT
[Ensembl]
¡û
>C015966
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
518852
518926
+
Thr
GGT
[Ensembl]
¡û
>WENV180101282
OAOU01017761
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
494
568
+
Thr
GGT
[ENA]
¢þ
>w003209
AADI01000001
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
186339
186268
-
Thr
GGT
[ENA]
¡û
>W141086183
AUSW01000030
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
1248
1174
-
Thr
GGT
[ENA]
¡û
>W141200527
AYXZ01000121
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
1673
1599
-
Thr
GGT
[ENA]
¡û
>W141200559
AYYA01000014
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
72634
72708
+
Thr
GGT
[ENA]
¡û
>C08007200
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
478733
478807
+
Thr
GGT
[Ensembl]
¡û
>W141234041
BAWI01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
622137
622211
+
Thr
GGT
[ENA]
¡û
>W141234099
BAWJ01000009
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
151466
151540
+
Thr
GGT
[ENA]
¡û
>WENV182577136
OJGC01015356
[OJGC] seawater metagenome; Sea water
159
233
+
Thr
GGT
[ENA]
¢þ
>WENV170014666
AYSL01003440
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
1678
1752
+
Thr
GGT
[ENA]
¢þ
>WENV170290769
CESA01051409
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
298
372
+
Thr
GGT
[ENA]
¢þ
>WENV170291159
CESA01093351
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
177
251
+
Thr
GGT
[ENA]
¢þ
>WENV170539405
CEWR01200391
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
570
496
-
Thr
GGT
[ENA]
¢þ
>WENV170563268
CZCB01012958
[CZCB] anaerobic digester metagenome; anaerobic digester
608
534
-
Thr
GGT
[ENA]
¢þ
>WENV170579912
FUFK010042446
[FUFK] metagenome; unknown
92312
92238
-
Thr
GGT
[ENA]
¢þ
>WENV170580074
FUFK010044046
[FUFK] metagenome; unknown
17169
17243
+
Thr
GGT
[ENA]
¢þ
>WENV170582536
FUFK010085771
[FUFK] metagenome; unknown
97
171
+
Thr
GGT
[ENA]
¢þ
>WENV170591268
FUFK010758430
[FUFK] metagenome; unknown
86
160
+
Thr
GGT
[ENA]
¢þ
>WENV170821417
MDSY01021928
[MDSY] marine metagenome; seawater
1168
1094
-
Thr
GGT
[ENA]
¢þ
>WENV170822263
MDSY01037052
[MDSY] marine metagenome; seawater
2288
2214
-
Thr
GGT
[ENA]
¢þ
>WENV170924318
MDTG01064046
[MDTG] marine metagenome; seawater
1814
1740
-
Thr
GGT
[ENA]
¢þ
>C181056045
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
2283700
2283774
+
Thr
GGT
-
¡û
>W09103296
AAJC01000001
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
120074
120148
+
Thr
GGT
[ENA]
¡û
>W09105572
AAPX01000008
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
20865
20791
-
Thr
GGT
[ENA]
¡û
>C181185230
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
2384400
2384326
-
Thr
GGT
-
¡û
>W141701365
JMKP01000043
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
17515
17589
+
Thr
GGT
[ENA]
¡û
>W1910372509
FUGD01000191
Gammaproteobacteria
Psychrobacter pasteurii CIP 110853 [FUGD]
1959
2033
+
Thr
GGT
[ENA]
¡û
>W1910377617
FUKN01000014
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
670976
671050
+
Thr
GGT
[ENA]
¡û
>W1910891633
NEXR01000001
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
631293
631367
+
Thr
GGT
[ENA]
¡û
>W1910891776
NEXU01000064
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
1339
1265
-
Thr
GGT
[ENA]
¡û
>W1911203658
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1103258
1103184
-
Thr
GGT
[ENA]
¡û
>W1911534869
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
1718146
1718220
+
Thr
GGT
[ENA]
¡û
>W1810155450
PJAS01000042
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
26607
26681
+
Thr
GGT
[ENA]
¡û
>W1810156181
PJBD01000029
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
29459
29533
+
Thr
GGT
[ENA]
¡û
>W1810156412
PJBH01000001
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
51340
51414
+
Thr
GGT
[ENA]
¡û
>W1810157367
PJBX01000128
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
37102
37176
+
Thr
GGT
[ENA]
¡û
>W1810596400
QGGM01000006
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
143940
144014
+
Thr
GGT
[ENA]
¡û
>W1810692682
QLKS01000003
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
914
840
-
Thr
GGT
[ENA]
¡û
>C151097232
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
2004479
2004553
+
Thr
GGT
-
¡û
>C161042732
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
602947
603021
+
Thr
GGT
-
¡û
>C161042780
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
593350
593424
+
Thr
GGT
[Ensembl]
¡û
>C161079260
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
587240
587314
+
Thr
GGT
[Ensembl]
¡û
>W121043527
AHVZ01000040
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
136544
136470
-
Thr
GGT
[ENA]
¡û
>W1610071757
BCUH01000056
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
17165
17239
+
Thr
GGT
[ENA]
¡û
>W1610112390
CZJV02000072
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
185455
185529
+
Thr
GGT
[ENA]
¡û
>C131017376
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
517442
517516
+
Thr
GGT
[Ensembl]
¡û
>W1610632757
LIQB01000011
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
676
602
-
Thr
GGT
[ENA]
¡û
>W1610642031
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
609448
609522
+
Thr
GGT
[ENA]
¡û
>W1610642084
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
582672
582746
+
Thr
GGT
[ENA]
¡û
>W1610752340
LNDJ01000118
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
887
813
-
Thr
GGT
[ENA]
¡û
>W1610774089
LNUO01000034
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
4899
4973
+
Thr
GGT
[ENA]
¡û
>W1611011827
LXWA01000020
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
58165
58239
+
Thr
GGT
[ENA]
¡û
>W1710068959
BCUH01000056
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
17165
17239
+
Thr
GGT
[ENA]
¡û
>W1710115094
CZJV02000072
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
185455
185529
+
Thr
GGT
[ENA]
¡û
>W1710767189
LIQB01000011
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
676
602
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK