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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338681 (65 seq.)
>W1711019175
LQXN01000001
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
5325
5251
-
Asn
GTT
[ENA]
¡û
>W1711019198
LQXN01000049
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
43853
43779
-
Asn
GTT
[ENA]
¡û
>W1711019218
LQXN01000058
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
133609
133535
-
Asn
GTT
[ENA]
¡û
>W1711019226
LQXN01000058
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
1629
1555
-
Asn
GTT
[ENA]
¡û
>W1711182122
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
1376718
1376792
+
Asn
GTT
[ENA]
¡û
>W1711182126
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
3808864
3808790
-
Asn
GTT
[ENA]
¡û
>W1711182147
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
370201
370127
-
Asn
GTT
[ENA]
¡û
>W1711182155
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
240952
240878
-
Asn
GTT
[ENA]
¡û
>W1711720446
MTIT01000002
Bacillota
Sutcliffiella halmapala halmapalus [MTIT]
1039222
1039296
+
Asn
GTT
[ENA]
¡û
>W1711720462
MTIT01000004
Bacillota
Sutcliffiella halmapala halmapalus [MTIT]
1265495
1265421
-
Asn
GTT
[ENA]
¡û
>W1711720469
MTIT01000004
Bacillota
Sutcliffiella halmapala halmapalus [MTIT]
1101972
1101898
-
Asn
GTT
[ENA]
¡û
>W1711720481
MTIT01000004
Bacillota
Sutcliffiella halmapala halmapalus [MTIT]
351658
351584
-
Asn
GTT
[ENA]
¡û
>C171114032
CP020880
Bacillota
Sutcliffiella horikoshii 20a [CP020880]
166388
166462
+
Asn
GTT
-
¡û
>C171114040
CP020880
Bacillota
Sutcliffiella horikoshii 20a [CP020880]
285346
285420
+
Asn
GTT
-
¡û
>C171114052
CP020880
Bacillota
Sutcliffiella horikoshii 20a [CP020880]
1009874
1009948
+
Asn
GTT
-
¡û
>C171114095
CP020880
Bacillota
Sutcliffiella horikoshii 20a [CP020880]
3452511
3452437
-
Asn
GTT
-
¡û
>WENV180014280
FPIC01136956
[FPIC] soil metagenome; Soil
74
148
+
Asn
GTT
[ENA]
¢þ
>C181033535
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
613205
613279
+
Asn
GTT
-
¡û
>C181033568
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
4769408
4769482
+
Asn
GTT
-
¡û
>C181033576
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
4825280
4825354
+
Asn
GTT
-
¡û
>C181033615
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
3548814
3548740
-
Asn
GTT
-
¡û
>W1910930291
NISO01000003
Bacillota
Bacillus alkalisoli FJAT-45122 [NISO]
793937
794011
+
Asn
GTT
[ENA]
¡û
>W1910930297
NISO01000004
Bacillota
Bacillus alkalisoli FJAT-45122 [NISO]
1984514
1984440
-
Asn
GTT
[ENA]
¡û
>W1910930315
NISO01000005
Bacillota
Bacillus alkalisoli FJAT-45122 [NISO]
291323
291249
-
Asn
GTT
[ENA]
¡û
>W1910930322
NISO01000005
Bacillota
Bacillus alkalisoli FJAT-45122 [NISO]
224605
224531
-
Asn
GTT
[ENA]
¡û
>W1910930412
NISQ01000001
Bacillota
Bacillus sp. FJAT-45066 [NISQ]
1451
1525
+
Asn
GTT
[ENA]
¡û
>W1910930442
NISQ01000001
Bacillota
Bacillus sp. FJAT-45066 [NISQ]
2922492
2922418
-
Asn
GTT
[ENA]
¡û
>W1910930449
NISQ01000001
Bacillota
Bacillus sp. FJAT-45066 [NISQ]
2857347
2857273
-
Asn
GTT
[ENA]
¡û
>W1910930462
NISQ01000001
Bacillota
Bacillus sp. FJAT-45066 [NISQ]
2367771
2367697
-
Asn
GTT
[ENA]
¡û
>W10102177
ACPC01000006
Bacillota
Bacillus sp. m3-13 [ACPC]
1070
996
-
Asn
GTT
[ENA]
¡û
>W10102190
ACPC01000019
Bacillota
Bacillus sp. m3-13 [ACPC]
271
345
+
Asn
GTT
[ENA]
¡û
>W10102198
ACPC01000019
Bacillota
Bacillus sp. m3-13 [ACPC]
124294
124368
+
Asn
GTT
[ENA]
¡û
>W10102215
ACPC01000019
Bacillota
Bacillus sp. m3-13 [ACPC]
126510
126584
+
Asn
GTT
[ENA]
¡û
>W10102227
ACPC01000044
Bacillota
Bacillus sp. m3-13 [ACPC]
310
384
+
Asn
GTT
[ENA]
¡û
>W11102333
ACPC01000006
Bacillota
Bacillus sp. m3-13 [ACPC]
1070
996
-
Asn
GTT
[ENA]
¡û
>W11102346
ACPC01000019
Bacillota
Bacillus sp. m3-13 [ACPC]
271
345
+
Asn
GTT
[ENA]
¡û
>W11102354
ACPC01000019
Bacillota
Bacillus sp. m3-13 [ACPC]
124294
124368
+
Asn
GTT
[ENA]
¡û
>W11102371
ACPC01000019
Bacillota
Bacillus sp. m3-13 [ACPC]
126510
126584
+
Asn
GTT
[ENA]
¡û
>W11102383
ACPC01000044
Bacillota
Bacillus sp. m3-13 [ACPC]
310
384
+
Asn
GTT
[ENA]
¡û
>W1511679527
LFEL01000004
Bacillota
Bacillus sp. LL01 [LFEL]
2653
2727
+
Asn
GTT
[ENA]
¡û
>W1511679530
LFEL01000004
Bacillota
Bacillus sp. LL01 [LFEL]
497471
497397
-
Asn
GTT
[ENA]
¡û
>W1511679548
LFEL01000008
Bacillota
Bacillus sp. LL01 [LFEL]
129488
129414
-
Asn
GTT
[ENA]
¡û
>W1511679556
LFEL01000008
Bacillota
Bacillus sp. LL01 [LFEL]
1473
1399
-
Asn
GTT
[ENA]
¡û
>W1610072335
BCUW01000027
Bacillota
Sutcliffiella cohnii NBRC 15565 [BCUW]
48209
48135
-
Asn
GTT
[ENA]
¡û
>W1610072338
BCUW01000050
Bacillota
Sutcliffiella cohnii NBRC 15565 [BCUW]
31904
31978
+
Asn
GTT
[ENA]
¡û
>W1610584098
LBMD01000017
Bacillota
Bacillus sp. CHD6a [LBMD]
154
228
+
Asn
GTT
[ENA]
¡û
>W1610584106
LBMD01000017
Bacillota
Bacillus sp. CHD6a [LBMD]
114784
114858
+
Asn
GTT
[ENA]
¡û
>W1610584125
LBMD01000032
Bacillota
Bacillus sp. CHD6a [LBMD]
43042
42968
-
Asn
GTT
[ENA]
¡û
>W1610584147
LBMD01000033
Bacillota
Bacillus sp. CHD6a [LBMD]
248
174
-
Asn
GTT
[ENA]
¡û
>W1610584151
LBMD01000049
Bacillota
Bacillus sp. CHD6a [LBMD]
4855
4781
-
Asn
GTT
[ENA]
¡û
>W1610867327
LQXN01000001
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
5325
5251
-
Asn
GTT
[ENA]
¡û
>W1610867350
LQXN01000049
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
43853
43779
-
Asn
GTT
[ENA]
¡û
>W1610867370
LQXN01000058
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
133609
133535
-
Asn
GTT
[ENA]
¡û
>W1610867378
LQXN01000058
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
1629
1555
-
Asn
GTT
[ENA]
¡û
>W1610989339
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
1376718
1376792
+
Asn
GTT
[ENA]
¡û
>W1610989343
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
3808864
3808790
-
Asn
GTT
[ENA]
¡û
>W1610989364
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
370201
370127
-
Asn
GTT
[ENA]
¡û
>W1610989372
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
240952
240878
-
Asn
GTT
[ENA]
¡û
>W1710069537
BCUW01000027
Bacillota
Sutcliffiella cohnii NBRC 15565 [BCUW]
48209
48135
-
Asn
GTT
[ENA]
¡û
>W1710069540
BCUW01000050
Bacillota
Sutcliffiella cohnii NBRC 15565 [BCUW]
31904
31978
+
Asn
GTT
[ENA]
¡û
>W1710703246
LBMD01000017
Bacillota
Bacillus sp. CHD6a [LBMD]
154
228
+
Asn
GTT
[ENA]
¡û
>W1710703254
LBMD01000017
Bacillota
Bacillus sp. CHD6a [LBMD]
114784
114858
+
Asn
GTT
[ENA]
¡û
>W1710703273
LBMD01000032
Bacillota
Bacillus sp. CHD6a [LBMD]
43042
42968
-
Asn
GTT
[ENA]
¡û
>W1710703295
LBMD01000033
Bacillota
Bacillus sp. CHD6a [LBMD]
248
174
-
Asn
GTT
[ENA]
¡û
>W1710703299
LBMD01000049
Bacillota
Bacillus sp. CHD6a [LBMD]
4855
4781
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK