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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338757 (94 seq.)
>W1710932027
LOHU01000080
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
425253
425179
-
Val
GAC
[ENA]
¡û
>W1711175869
LWFA01002974
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
2292
2366
+
Val
GAC
[ENA]
¡û
>W1711229273
LXYH01000006
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
13751
13825
+
Val
GAC
[ENA]
¡û
>W1711229684
LXYQ01000154
Alphaproteobacteria
Roseovarius indicus [LXYQ]
2861
2787
-
Val
GAC
[ENA]
¡û
>W1711695310
MSIT01000002
Alphaproteobacteria
Salibaculum halophilum WDS1C4 [MSIT]
275649
275575
-
Val
GAC
[ENA]
¡û
>W1711744310
MUHR01000017
Alphaproteobacteria
Planktotalea arctica IMCC9565 [MUHR]
27503
27577
+
Val
GAC
[ENA]
¡û
>C171092033
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
2043136
2043210
+
Val
GAC
-
¡û
>C171108656
CP020474
Alphaproteobacteria
Roseovarius mucosus SMR3 [CP020474]
749606
749680
+
Val
GAC
-
¡û
>w027759
ABCL01000008
Alphaproteobacteria
Roseovarius sp. TM1035 [ABCL]
156270
156346
+
Val
GAC
[ENA]
¡û
>w012871
AAMV01000006
Alphaproteobacteria
Roseovarius sp. 217 [AAMV]
123310
123234
-
Val
GAC
[ENA]
¡û
>WENV180014316
FPIC01163082
[FPIC] soil metagenome; Soil
431
505
+
Val
GAC
[ENA]
¢þ
>WENV180209483
OBAL01001532
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1738
1812
+
Val
GAC
[ENA]
¢þ
>WENV180357304
OBNN01001206
[OBNN] marine metagenome; Coastal water
319
245
-
Val
GAC
[ENA]
¢þ
>WENV180391644
OBPN01014968
[OBPN] marine metagenome; seawater
206
132
-
Val
GAC
[ENA]
¢þ
>WENV180636657
OCRF01030382
[OCRF] marine metagenome; niskin bottle
322
396
+
Val
GAC
[ENA]
¢þ
>W141151453
AXBB01000002
Alphaproteobacteria
Phaeobacter inhibens DSM 16374 [AXBB]
428624
428550
-
Val
GAC
[ENA]
¡û
>WENV183704445
PDWI01000244
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
18415
18489
+
Val
GAC
[ENA]
¢þ
>ENV08000751
ABMI01073586
saltern metagenome; microbial fraction from low salinity saltern in San Diego, CA
25
99
+
Val
GAC
[ENA]
¡û
>WENV183716877
PDWJ01000234
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
18415
18489
+
Val
GAC
[ENA]
¢þ
>WENV170112077
CEGC01017092
[CEGC] microbial mat metagenome; grass silage
1
75
+
Val
GAC
[ENA]
¢þ
>WENV170266983
CERE01167177
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
96
22
-
Val
GAC
[ENA]
¢þ
>WENV170468065
CEVF01008037
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1056
1130
+
Val
GAC
[ENA]
¢þ
>WENV170634484
FYBJ01001451
[FYBJ] marine metagenome; marine
14846
14772
-
Val
GAC
[ENA]
¢þ
>WENV170759154
LUMS01004350
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
2163
2089
-
Val
GAC
[ENA]
¢þ
>W09112102
ABXM01000012
Alphaproteobacteria
Ruegeria sp. R11 [ABXM]
208292
208366
+
Val
GAC
[ENA]
¡û
>WENV170927298
MDTG01114835
[MDTG] marine metagenome; seawater
2356
2282
-
Val
GAC
[ENA]
¢þ
>C181008484
CP010595
Alphaproteobacteria
Phaeobacter inhibens P10 [CP010595]
3417325
3417399
+
Val
GAC
-
¡û
>C181008554
CP010599
Alphaproteobacteria
Phaeobacter inhibens P83 [CP010599]
3404350
3404424
+
Val
GAC
-
¡û
>C181008597
CP010610
Alphaproteobacteria
Phaeobacter inhibens P92 [CP010610]
3339598
3339672
+
Val
GAC
-
¡û
>C181008654
CP010617
Alphaproteobacteria
Phaeobacter inhibens P30 [CP010617]
3287178
3287252
+
Val
GAC
-
¡û
>C181008711
CP010623
Alphaproteobacteria
Phaeobacter inhibens P51 [CP010623]
3238607
3238681
+
Val
GAC
-
¡û
>C181008784
CP010629
Alphaproteobacteria
Phaeobacter inhibens P78 [CP010629]
3174968
3175042
+
Val
GAC
-
¡û
>C181008830
CP010636
Alphaproteobacteria
Phaeobacter gallaeciensis P73 [CP010636]
3361682
3361756
+
Val
GAC
-
¡û
>C181008884
CP010643
Alphaproteobacteria
Phaeobacter piscinae P36 [CP010643]
3193231
3193305
+
Val
GAC
-
¡û
>C181008941
CP010650
Alphaproteobacteria
Phaeobacter inhibens P54 [CP010650]
3294325
3294399
+
Val
GAC
-
¡û
>C181009013
CP010656
Alphaproteobacteria
Phaeobacter piscinae P71 [CP010656]
3168918
3168992
+
Val
GAC
-
¡û
>C181009055
CP010661
Alphaproteobacteria
Phaeobacter inhibens P74 [CP010661]
3341274
3341348
+
Val
GAC
-
¡û
>C181009112
CP010668
Alphaproteobacteria
Phaeobacter inhibens P57 [CP010668]
3237133
3237207
+
Val
GAC
-
¡û
>C181009185
CP010673
Alphaproteobacteria
Phaeobacter gallaeciensis P75 [CP010673]
3397101
3397175
+
Val
GAC
-
¡û
>C181009284
CP010689
Alphaproteobacteria
Phaeobacter piscinae P42 [CP010689]
3193231
3193305
+
Val
GAC
-
¡û
>C181009341
CP010696
Alphaproteobacteria
Phaeobacter inhibens P24 [CP010696]
3290458
3290532
+
Val
GAC
-
¡û
>C181009414
CP010705
Alphaproteobacteria
Phaeobacter inhibens P66 [CP010705]
3449140
3449214
+
Val
GAC
-
¡û
>C181009514
CP010725
Alphaproteobacteria
Phaeobacter inhibens P88 [CP010725]
3434315
3434389
+
Val
GAC
-
¡û
>C181009570
CP010735
Alphaproteobacteria
Phaeobacter inhibens P72 [CP010735]
3401820
3401894
+
Val
GAC
-
¡û
>C181009741
CP010749
Alphaproteobacteria
Phaeobacter inhibens P70 [CP010749]
3339597
3339671
+
Val
GAC
-
¡û
>C181009813
CP010756
Alphaproteobacteria
Phaeobacter inhibens P80 [CP010756]
3404354
3404428
+
Val
GAC
-
¡û
>C181009856
CP010767
Alphaproteobacteria
Phaeobacter piscinae P13 [CP010767]
3177871
3177945
+
Val
GAC
-
¡û
>C181009929
CP010784
Alphaproteobacteria
Phaeobacter gallaeciensis P63 [CP010784]
3361683
3361757
+
Val
GAC
-
¡û
>C181009971
CP010805
Alphaproteobacteria
Phaeobacter piscinae P23 [CP010805]
3193231
3193305
+
Val
GAC
-
¡û
>C181048988
CP021040
Alphaproteobacteria
Phaeobacter gallaeciensis P129 [CP021040]
3292315
3292389
+
Val
GAC
-
¡û
>C181187986
CP030099
Alphaproteobacteria
Roseovarius sp. AK1035 [CP030099]
3675570
3675644
+
Val
GAC
-
¡û
>C191083142
CP031948
Alphaproteobacteria
Phaeobacter inhibens BS107 [CP031948]
3368082
3368156
+
Val
GAC
-
¡û
>C191083197
CP031952
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP031952]
3346114
3346188
+
Val
GAC
-
¡û
>C191083245
CP031956
Alphaproteobacteria
Phaeobacter sp. LSS9 [CP031956]
2290626
2290700
+
Val
GAC
-
¡û
>W141818749
JQLS01000008
Alphaproteobacteria
Roseovarius sp. MCTG156(2b) [JQLS]
1073129
1073055
-
Val
GAC
[ENA]
¡û
>W1910442639
FWFJ01000046
Alphaproteobacteria
Roseovarius gaetbuli CECT 8370 [FWFJ]
22042
21968
-
Val
GAC
[ENA]
¡û
>W1910442706
FWFL01000002
Alphaproteobacteria
Roseovarius litorisediminis CECT 8287 [FWFL]
518507
518433
-
Val
GAC
[ENA]
¡û
>W1910442860
FWFO01000003
Alphaproteobacteria
Falsiruegeria litorea R37 CECT 7639 [FWFO]
14896
14970
+
Val
GAC
[ENA]
¡û
>C141011192
CP006966
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [CP006966]
3362716
3362790
+
Val
GAC
[Ensembl]
¡û
>W1911749932
QWJJ01000016
Alphaproteobacteria
Pseudooceanicola sediminis CY03 [QWJJ]
109590
109516
-
Val
GAC
[ENA]
¡û
>SRA1000658
SRR001046.8602
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
25
99
+
Val
GAC
[SRA]
>W1810112308
PHJF01000005
Alphaproteobacteria
Epibacterium ulvae U95 [PHJF]
246249
246175
-
Val
GAC
[ENA]
¡û
>W1810364790
PVTN01000003
Alphaproteobacteria
Marivita geojedonensis DSM 29432 [PVTN]
107210
107136
-
Val
GAC
[ENA]
¡û
>W1810532461
QCYH01000003
Alphaproteobacteria
Pelagivirga sediminicola BH-SD19 [QCYH]
33801
33875
+
Val
GAC
[ENA]
¡û
>W1810570018
QEHM01000003
Alphaproteobacteria
Albibacillus kandeliae J95 [QEHM]
13696
13622
-
Val
GAC
[ENA]
¡û
>W1810580473
QETF01000031
Alphaproteobacteria
Salibaculum griseiflavum WDS4C29 [QETF]
10704
10778
+
Val
GAC
[ENA]
¡û
>W1810719923
QNQP01000003
Alphaproteobacteria
Roseovarius dicentrarchi YLY04 [QNQP]
52942
53016
+
Val
GAC
[ENA]
¡û
>W1810913111
QVMW01000002
Alphaproteobacteria
Rhodobacteraceae bacterium 63075 [QVMW]
286340
286414
+
Val
GAC
[ENA]
¡û
>SRA1052944
SRR035098.305163
454 Sequencing (SRP001819)
104
178
+
Val
GAC
[SRA]
>W1510650748
CVRL01000041
Alphaproteobacteria
Phaeobacter italicus CECT 7321 [CVRL]
227652
227578
-
Val
GAC
[ENA]
¡û
>W1510650806
CVRM01000034
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVRM]
151427
151353
-
Val
GAC
[ENA]
¡û
>W1511388755
JSWJ01000004
Alphaproteobacteria
Phaeobacter sp. S60 [JSWJ]
1338
1412
+
Val
GAC
[ENA]
¡û
>W1511564677
LADY01000011
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
11713
11787
+
Val
GAC
[ENA]
¡û
>W1511583813
LAUK01000008
Alphaproteobacteria
Nautella sp. ECSMB14104 [LAUK]
11594
11668
+
Val
GAC
[ENA]
¡û
>C121003786
CP002972
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP002972]
3346055
3346129
+
Val
GAC
[Ensembl]
¡û
>C121003845
CP002976
Alphaproteobacteria
Phaeobacter inhibens DSM 17395 [CP002976]
3407046
3407120
+
Val
GAC
-
¡û
>W1610014797
AONH01000016
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
570493
570419
-
Val
GAC
[ENA]
¡û
>W1610578311
LAXI01000023
Alphaproteobacteria
Roseovarius indicus [LAXI]
34253
34327
+
Val
GAC
[ENA]
¡û
>W1610789496
LOHU01000080
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
425253
425179
-
Val
GAC
[ENA]
¡û
>W1610984182
LWFA01002974
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
2292
2366
+
Val
GAC
[ENA]
¡û
>W1611013143
LXYH01000006
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
13751
13825
+
Val
GAC
[ENA]
¡û
>W1611013554
LXYQ01000154
Alphaproteobacteria
Roseovarius indicus [LXYQ]
2861
2787
-
Val
GAC
[ENA]
¡û
>W1710011688
AONH01000016
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
570493
570419
-
Val
GAC
[ENA]
¡û
>W1710015339
AQQP01000001
Alphaproteobacteria
Phaeobacter sp. 22II1-1F12B [AQQP]
488245
488171
-
Val
GAC
[ENA]
¡û
>W1710508624
FMWG01000006
Alphaproteobacteria
Epibacterium ulvae [FMWG]
247298
247224
-
Val
GAC
[ENA]
¡û
>W1710531631
FNPR01000003
Alphaproteobacteria
Lentibacter algarum [FNPR]
185654
185728
+
Val
GAC
[ENA]
¡û
>W1710559874
FOMY01000016
Alphaproteobacteria
Roseovarius indicus [FOMY]
62022
61948
-
Val
GAC
[ENA]
¡û
>W1710562491
FOOZ01000007
Alphaproteobacteria
Phaeobacter italicus italica [FOOZ]
151728
151654
-
Val
GAC
[ENA]
¡û
>W1710571070
FOVP01000016
Alphaproteobacteria
Roseovarius lutimaris [FOVP]
50713
50787
+
Val
GAC
[ENA]
¡û
>W1710586316
FQXC01000001
Alphaproteobacteria
Marivita hallyeonensis [FQXC]
219367
219293
-
Val
GAC
[ENA]
¡û
>W1710591914
FRCB01000010
Alphaproteobacteria
Roseovarius litoreus [FRCB]
93961
93887
-
Val
GAC
[ENA]
¡û
>W1710616678
JFKC01000002
Alphaproteobacteria
Marivita geojedonensis [JFKC]
188220
188146
-
Val
GAC
[ENA]
¡û
>W1710616723
JFKD01000003
Alphaproteobacteria
Marivita cryptomonadis [JFKD]
258316
258390
+
Val
GAC
[ENA]
¡û
>W1710697184
LAXI01000023
Alphaproteobacteria
Roseovarius indicus [LAXI]
34253
34327
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK