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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338934 (35 seq.)
>W131175754
ARJM01000062
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
87520
87444
-
Met
CAT
[ENA]
¡û
>W131175756
ARJM01000062
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
87284
87208
-
Met
CAT
[ENA]
¡û
>WENV170015893
AZIJ01003348
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
212
136
-
Met
CAT
[ENA]
¡û
>WENV170112230
CEGE01000134
[CEGE] microbial mat metagenome; grass silage
6011
5935
-
Met
CAT
[ENA]
¡û
>WENV170112232
CEGE01000134
[CEGE] microbial mat metagenome; grass silage
5839
5763
-
Met
CAT
[ENA]
¡û
>WENV170112631
CEGF01007987
[CEGF] microbial mat metagenome; grass silage
249
325
+
Met
CAT
[ENA]
¡û
>WENV170112633
CEGF01007987
[CEGF] microbial mat metagenome; grass silage
421
497
+
Met
CAT
[ENA]
¡û
>WENV170112637
CEGF01008372
[CEGF] microbial mat metagenome; grass silage
457
381
-
Met
CAT
[ENA]
¡û
>WENV170112639
CEGF01008372
[CEGF] microbial mat metagenome; grass silage
287
211
-
Met
CAT
[ENA]
¡û
>WENV170655542
JTFN01042943
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
235
311
+
Met
CAT
[ENA]
¡û
>WENV170655544
JTFN01042943
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
411
487
+
Met
CAT
[ENA]
¡û
>WENV170656827
JTFO01048048
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
235
311
+
Met
CAT
[ENA]
¡û
>WENV170656829
JTFO01048048
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
411
487
+
Met
CAT
[ENA]
¡û
>WENV170657250
JTFO01111155
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
105
181
+
Met
CAT
[ENA]
¡û
>WENV170658509
JTFP01128892
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
778
854
+
Met
CAT
[ENA]
¡û
>W141713660
JMSZ01000016
Gammaproteobacteria
Nitrincola lacisaponensis [JMSZ]
337350
337274
-
Met
CAT
[ENA]
¡û
>W141713662
JMSZ01000016
Gammaproteobacteria
Nitrincola lacisaponensis [JMSZ]
337169
337093
-
Met
CAT
[ENA]
¡û
>W2011522301
SACQ01000006
Gammaproteobacteria
Neptunomonas sp. HPM-16 [SACQ]
57810
57734
-
Met
CAT
[ENA]
¡û
>W2011522303
SACQ01000006
Gammaproteobacteria
Neptunomonas sp. HPM-16 [SACQ]
57620
57544
-
Met
CAT
[ENA]
¡û
>W2011639481
SMRS01000001
Gammaproteobacteria
Nitrincola sp. MEB193 [SMRS]
432269
432193
-
Met
CAT
[ENA]
¡û
>W2011670890
SPLL01000007
Gammaproteobacteria
Neptunomonas sp. XY-337 [SPLL]
49179
49103
-
Met
CAT
[ENA]
¡û
>W2011670892
SPLL01000007
Gammaproteobacteria
Neptunomonas sp. XY-337 [SPLL]
48989
48913
-
Met
CAT
[ENA]
¡û
>W2110030752
BMLT01000011
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
41791
41715
-
Met
CAT
[ENA]
¡û
>W2110030754
BMLT01000011
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
41585
41509
-
Met
CAT
[ENA]
¡û
>C211032084
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
3233878
3233954
+
Met
CAT
-
¡û
>C211032086
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
3234050
3234126
+
Met
CAT
-
¡û
>C231131071
CP073347
Gammaproteobacteria
Marinobacterium rhizophilum D13-1 [CP073347]
4410185
4410109
-
Met
CAT
-
¡û
>C231313140
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
576403
576327
-
Met
CAT
-
¡û
>C161091172
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
4370226
4370302
+
Met
CAT
[Ensembl]
¡û
>W1610062672
BCNS01000012
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
14689
14765
+
Met
CAT
[ENA]
¡û
>W1610062674
BCNS01000012
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
15049
15125
+
Met
CAT
[ENA]
¡û
>W1710060148
BCNS01000012
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
14689
14765
+
Met
CAT
[ENA]
¡û
>W1710060150
BCNS01000012
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
15049
15125
+
Met
CAT
[ENA]
¡û
>W1710533778
FNRJ01000019
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
55655
55579
-
Met
CAT
[ENA]
¡û
>W1710533780
FNRJ01000019
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
55485
55409
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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