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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338977 (29 seq.)
>W131099251
AOSX01000018
Bacillota
Clostridium botulinum Af84 [AOSX]
437640
437715
+
Lys
CTT
[ENA]
¡û
>C171022016
CP013247
Bacillota
Clostridium botulinum CDC_53174 [CP013247]
2120880
2120805
-
Lys
CTT
-
¡û
>WENV180118713
OASD01000476
[OASD] human gut metagenome; ENVO:feces
5135
5060
-
Lys
CTT
[ENA]
¢þ
>WENV180120190
OASL01001002
[OASL] human gut metagenome; ENVO:feces
29
104
+
Lys
CTT
[ENA]
¢þ
>WENV180198170
OBAC01003748
[OBAC] human gut metagenome; ENVO:feces
1010
935
-
Lys
CTT
[ENA]
¢þ
>WENV180403451
OBRT01000351
[OBRT] human gut metagenome; ENVO:feces
7624
7699
+
Lys
CTT
[ENA]
¢þ
>WENV180405430
OBTM01006397
[OBTM] human gut metagenome; ENVO:feces
748
673
-
Lys
CTT
[ENA]
¢þ
>WENV180596260
OCPH01003987
[OCPH] human gut metagenome; ENVO:feces
863
938
+
Lys
CTT
[ENA]
¢þ
>WENV180597149
OCPK01003824
[OCPK] human gut metagenome; ENVO:feces
971
1046
+
Lys
CTT
[ENA]
¢þ
>W08001165
ABDP01000011
Bacillota
Clostridium botulinum Bf [ABDP]
116212
116140
-
Lys
CTT
[ENA]
¡û
>WENV182644331
OJLW01023436
[OJLW] metagenome; surface
771
846
+
Lys
CTT
[ENA]
¢þ
>WENV182645548
OJLY01052445
[OJLY] metagenome; surface
320
395
+
Lys
CTT
[ENA]
¢þ
>W141461137
JFGI01000377
Bacillota
Clostridium botulinum [JFGI]
799
874
+
Lys
CTT
[ENA]
¡û
>C181013478
CP013701
Bacillota
Clostridium sporogenes AM1195 [CP013701]
3614557
3614482
-
Lys
CTT
-
¡û
>C181168901
CP028842
Bacillota
Clostridium botulinum DFPST0029 [CP028842]
3434695
3434620
-
Lys
CTT
-
¡û
>W1810573607
QEKV01000015
Bacillota
Ezakiella coagulans DSM 20705 [QEKV]
5215
5140
-
Lys
CTT
[ENA]
¡û
>C151045909
CP009225
Bacillota
Clostridium sporogenes NCIMB 10696 [CP009225]
3677115
3677040
-
Lys
CTT
[Ensembl]
¡û
>C151045917
CP009225
Bacillota
Clostridium sporogenes NCIMB 10696 [CP009225]
3676380
3676305
-
Lys
CTT
[Ensembl]
¡û
>C151086000
CP011663
Bacillota
Clostridium sporogenes DSM 795 [CP011663]
3678122
3678047
-
Lys
CTT
[Ensembl]
¡û
>C151086008
CP011663
Bacillota
Clostridium sporogenes DSM 795 [CP011663]
3677387
3677312
-
Lys
CTT
[Ensembl]
¡û
>W1511351127
JRMY01000049
Bacillota
Tissierellia bacterium S7-1-4 S7.1.4 [JRMY]
5117
5042
-
Lys
CTT
[ENA]
¡û
>W1511565775
LAGD01000084
Bacillota
Clostridium botulinum ATCC 51387 [LAGD]
76
1
-
Lys
CTT
[ENA]
¡û
>W1511565902
LAGF01000254
Bacillota
Clostridium sporogenes CDC23284 [LAGF]
172
97
-
Lys
CTT
[ENA]
¡û
>W1511699069
LGIH01000012
Bacillota
Clostridium botulinum ATCC 17843 [LGIH]
133
208
+
Lys
CTT
[ENA]
¡û
>C161004269
CP006902
Bacillota
Clostridium botulinum Prevot_594 [CP006902]
2288028
2287953
-
Lys
CTT
[Ensembl]
¡û
>C161004277
CP006902
Bacillota
Clostridium botulinum Prevot_594 [CP006902]
2287293
2287218
-
Lys
CTT
[Ensembl]
¡û
>W1610026252
AUYX01000012
Bacillota
Clostridium botulinum B2 275 [AUYX]
63570
63495
-
Lys
CTT
[ENA]
¡û
>W1710022301
AUYX01000012
Bacillota
Clostridium botulinum B2 275 [AUYX]
63570
63495
-
Lys
CTT
[ENA]
¡û
>W1710754610
LHUL01000006
Bacillota
Clostridium botulinum [LHUL]
133
208
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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