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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339061 (64 seq.)
>W1710891866
LNDC01000080
Cyanobacteriota
Geitlerinema sp. PCC 9228 [LNDC]
9391
9318
-
Val
CAC
[ENA]
¡û
>W131036560
ALVW01000020
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
30863
30936
+
Val
CAC
[ENA]
¡û
>W1711128091
LURJ01000010
Cyanobacteriota
Synechococcus sp. REDSEA-S01_B1 [LURJ]
35784
35855
+
Val
CAC
[ENA]
¡û
>W1711190031
LWRO01000004
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
28732
28660
-
Val
CAC
[ENA]
¡û
>W1711229753
LXYR01000097
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
5366
5295
-
Val
CAC
[ENA]
¡û
>C171072605
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
618408
618337
-
Val
CAC
-
¡û
>C171128286
LT578417
Cyanobacteriota
Cyanobium sp. NIES-981 [LT578417]
1173528
1173599
+
Val
CAC
-
¡û
>C025240
CT978603
Cyanobacteriota
Synechococcus sp. RCC307 [CT978603]
634416
634345
-
Val
CAC
[Ensembl]
¡û
>w013577
AANO01000005
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
9844
9770
-
Val
CAC
[ENA]
¡û
>WENV180357680
OBNN01063782
[OBNN] marine metagenome; Coastal water
51
122
+
Val
CAC
[ENA]
¢þ
>WENV180358384
OBNP01045947
[OBNP] marine metagenome; seawater
199
127
-
Val
CAC
[ENA]
¢þ
>WENV180363831
OBNZ01010859
[OBNZ] marine metagenome; ENVO:00002010
368
297
-
Val
CAC
[ENA]
¢þ
>WENV180366536
OBOD01036783
[OBOD] marine metagenome; ENVO:00002010
192
121
-
Val
CAC
[ENA]
¢þ
>WENV180377551
OBON01043277
[OBON] marine metagenome; sea water
237
166
-
Val
CAC
[ENA]
¢þ
>W141038263
ALVK01000018
Cyanobacteriota
Pseudanabaena sp. PCC 6802 [ALVK]
809572
809501
-
Val
CAC
[ENA]
¡û
>WENV181367877
OFQD01003427
[OFQD] freshwater metagenome; Freshwater Lake
602
674
+
Val
CAC
[ENA]
¢þ
>WENV181384875
OFRI01017953
[OFRI] wastewater metagenome; Exp Tend VB 90WW
316
387
+
Val
CAC
[ENA]
¢þ
>WENV181843296
OGVU01007225
[OGVU] freshwater metagenome; freshwater
136
207
+
Val
CAC
[ENA]
¢þ
>WENV181853115
OGWH01035178
[OGWH] freshwater metagenome; freshwater
360
286
-
Val
CAC
[ENA]
¢þ
>W08011025
ABSE01000010
Cyanobacteriota
Cyanobium sp. PCC 7001 [ABSE]
344265
344336
+
Val
CAC
[ENA]
¡û
>WENV170019212
BBPD01006114
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
6420
6493
+
Val
CAC
[ENA]
¢þ
>WENV170020629
BBPE01015335
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
7134
7207
+
Val
CAC
[ENA]
¢þ
>WENV170119642
CENJ01157259
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
351
425
+
Val
CAC
[ENA]
¢þ
>WENV170133902
CENU01060923
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3230
3156
-
Val
CAC
[ENA]
¢þ
>WENV170615013
FUWD012846323
[FUWD] metagenome; unknown
478
407
-
Val
CAC
[ENA]
¢þ
>WENV170622365
FUWD013099940
[FUWD] metagenome; unknown
690
761
+
Val
CAC
[ENA]
¢þ
>WENV170630583
FUWD013314372
[FUWD] metagenome; unknown
690
761
+
Val
CAC
[ENA]
¢þ
>WENV170769480
LXNH01056003
[LXNH] seawater metagenome; marine seawater
604
678
+
Val
CAC
[ENA]
¢þ
>WENV170808645
MDSW01118763
[MDSW] marine metagenome; seawater
2482
2410
-
Val
CAC
[ENA]
¢þ
>WENV170826494
MDSY01111783
[MDSY] marine metagenome; seawater
2439
2365
-
Val
CAC
[ENA]
¢þ
>C181030488
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
1059342
1059269
-
Val
CAC
-
¡û
>WENV021828
AACY020600387
Marine microbial communities from Global Ocean Sampling (GOS)
185
111
-
Val
CAC
[ENA]
>W141712583
JMRP01000038
Cyanobacteriota
Cyanobium sp. CACIAM 14 [JMRP]
26686
26615
-
Val
CAC
[ENA]
¡û
>W1910155422
BIMP01000001
Cyanobacteriota
cyanobiont of Ornithocercus magnificus Ornithocercus magnificus OmCyn01 [BIMP]
277060
277131
+
Val
CAC
[ENA]
¡û
>W1911176856
NQKW01000002
Cyanobacteriota
Synechococcus sp. 1G10 [NQKW]
213670
213599
-
Val
CAC
[ENA]
¡û
>W1911176893
NQKX01000001
Cyanobacteriota
Synechococcus sp. MW101C3 [NQKX]
297080
297151
+
Val
CAC
[ENA]
¡û
>W1911176943
NQKY01000004
Cyanobacteriota
Synechococcus sp. BO 8801 [NQKY]
150227
150298
+
Val
CAC
[ENA]
¡û
>W1911176990
NQKZ01000004
Cyanobacteriota
Synechococcus sp. 8F6 [NQKZ]
79421
79350
-
Val
CAC
[ENA]
¡û
>W1911177023
NQLA01000003
Cyanobacteriota
Vulcanococcus limneticus LL [NQLA]
113848
113919
+
Val
CAC
[ENA]
¡û
>W1911638485
PVWP01000003
Cyanobacteriota
Aphanothece minutissima minutissima CCALA 015 [PVWP]
236206
236135
-
Val
CAC
[ENA]
¡û
>W1810389433
PXXO01000001
Cyanobacteriota
Cyanobium usitatum str. Tous [PXXO]
92960
92889
-
Val
CAC
[ENA]
¡û
>SRA1027257
SRR035086.91354
454 Sequencing (SRP001807)
137
208
+
Val
CAC
[SRA]
>C151104958
LN847356
Cyanobacteriota
Synechococcus sp. WH 8103 [LN847356]
1721879
1721950
+
Val
CAC
[Ensembl]
¡û
>SRA1027828
SRR035086.202430
454 Sequencing (SRP001807)
168
239
+
Val
CAC
[SRA]
>SRA1027888
SRR035086.212635
454 Sequencing (SRP001807)
137
208
+
Val
CAC
[SRA]
>SRA1029339
SRR035087.111440
454 Sequencing (SRP001808)
29
100
+
Val
CAC
[SRA]
>SRA1034294
SRR035089.51207
454 Sequencing (SRP001810)
267
338
+
Val
CAC
[SRA]
>SRA1051673
SRR035098.56187
454 Sequencing (SRP001819)
87
16
-
Val
CAC
[SRA]
>SRA1052298
SRR035098.177103
454 Sequencing (SRP001819)
116
187
+
Val
CAC
[SRA]
>SRA1052325
SRR035098.182994
454 Sequencing (SRP001819)
207
136
-
Val
CAC
[SRA]
>SRA1052854
SRR035098.285965
454 Sequencing (SRP001819)
261
190
-
Val
CAC
[SRA]
>SRA1053372
SRR035098.393532
454 Sequencing (SRP001819)
371
442
+
Val
CAC
[SRA]
>SRA1053533
SRR035098.429890
454 Sequencing (SRP001819)
90
19
-
Val
CAC
[SRA]
>SRA1053683
SRR035098.467685
454 Sequencing (SRP001819)
90
19
-
Val
CAC
[SRA]
>W10120599
ADXM01000068
Cyanobacteriota
Synechococcus sp. CB0205 [ADXM]
31632
31704
+
Val
CAC
[ENA]
¡û
>W11127343
ADXM01000068
Cyanobacteriota
Synechococcus sp. CB0205 [ADXM]
31632
31704
+
Val
CAC
[ENA]
¡û
>W1511501720
JXCB01000008
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
1040837
1040910
+
Val
CAC
[ENA]
¡û
>W1511679496
LFEK01000110
Cyanobacteriota
Synechococcus sp. GFB01 [LFEK]
56817
56888
+
Val
CAC
[ENA]
¡û
>C131003914
CP003495
Cyanobacteriota
Cyanobium gracile PCC 6307 [CP003495]
3155925
3155854
-
Val
CAC
[Ensembl]
¡û
>W1610626659
LICO01000147
Cyanobacteriota
cyanobacterium BACL30 MAG-120619-bin27 [LICO]
381
452
+
Val
CAC
[ENA]
¡û
>W1610939205
LURJ01000010
Cyanobacteriota
Synechococcus sp. REDSEA-S01_B1 [LURJ]
35784
35855
+
Val
CAC
[ENA]
¡û
>W1610992150
LWRO01000004
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
28732
28660
-
Val
CAC
[ENA]
¡û
>W1611013623
LXYR01000097
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
5366
5295
-
Val
CAC
[ENA]
¡û
>W1710757786
LICO01000147
Cyanobacteriota
cyanobacterium BACL30 MAG-120619-bin27 [LICO]
381
452
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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