This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339165 (27 seq.)
>W1711272474
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
522473
522399
-
Asn
GTT
[ENA]
¡û
>C171100348
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
670316
670390
+
Asn
GTT
-
¡û
>C171100393
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
627994
628068
+
Asn
GTT
-
¡û
>C007685
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
741036
741110
+
Asn
GTT
[Ensembl]
¡û
>WENV180013511
FMSI01094477
[FMSI] soil metagenome; Soil
2
76
+
Asn
GTT
[ENA]
¢þ
>WENV180591509
OCOV01033150
[OCOV] marine metagenome; ENVO:01000301
250
324
+
Asn
GTT
[ENA]
¢þ
>WENV181409200
OGCI01000030
[OGCI] hot springs metagenome; Hot spring water
136119
136045
-
Asn
GTT
[ENA]
¢þ
>WENV183726140
PJQF01092478
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
274
346
+
Asn
GTT
[ENA]
¢þ
>WENV170379575
CETV01137786
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
933
859
-
Asn
GTT
[ENA]
¢þ
>WENV170659072
JXWO01000171
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
67740
67814
+
Asn
GTT
[ENA]
¢þ
>WENV170956486
MJUP01023915
[MJUP] soil metagenome; viral particles from soil sample MGM
78
152
+
Asn
GTT
[ENA]
¢þ
>WENV170982376
MWVU01080220
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
470
396
-
Asn
GTT
[ENA]
¢þ
>WENV170983225
MWVV01013445
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
1359
1433
+
Asn
GTT
[ENA]
¢þ
>WENV170984653
MWVV01383835
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
339
265
-
Asn
GTT
[ENA]
¢þ
>WENV170990859
MWWA01060286
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
209
135
-
Asn
GTT
[ENA]
¢þ
>WENV170992410
MWWB01024964
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
722
796
+
Asn
GTT
[ENA]
¢þ
>WENV170998793
MWWJ01109309
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
417
343
-
Asn
GTT
[ENA]
¢þ
>C181003131
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
652321
652395
+
Asn
GTT
-
¡û
>W1910574713
JQAN02000006
Chloroflexota
Dehalogenimonas etheniformans GP [JQAN]
455428
455502
+
Asn
GTT
[ENA]
¡û
>W1810266193
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
404309
404383
+
Asn
GTT
[ENA]
¡û
>C151015169
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
733719
733793
+
Asn
GTT
[Ensembl]
¡û
>SRA1035550
SRR035089.328871
454 Sequencing (SRP001810)
142
68
-
Asn
GTT
[SRA]
>W1610521054
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
67415
67341
-
Asn
GTT
[ENA]
¡û
>W1610597176
LFDV01000002
Chloroflexota
Dehalogenimonas alkenigignens [LFDV]
1242029
1241955
-
Asn
GTT
[ENA]
¡û
>W1611032002
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
522473
522399
-
Asn
GTT
[ENA]
¡û
>W1710617304
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
67415
67341
-
Asn
GTT
[ENA]
¡û
>W1710718335
LFDV01000002
Chloroflexota
Dehalogenimonas alkenigignens [LFDV]
1242029
1241955
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK