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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339306 (88 seq.)
>W1710893677
LNEZ01000081
Alphaproteobacteria
Rhizobiales bacterium Ga0077548 [LNEZ]
6570
6644
+
Val
CAC
[ENA]
¡û
>W131058821
ANFY01000005
Alphaproteobacteria
Sandarakinorhabdus sp. AAP62 [ANFY]
176744
176818
+
Val
CAC
[ENA]
¡û
>W1711129164
LUTU01000001
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
732
658
-
Val
CAC
[ENA]
¡û
>W131216126
ATVO01000007
Alphaproteobacteria
Sandarakinorhabdus limnophila DSM 17366 [ATVO]
158964
159038
+
Val
CAC
[ENA]
¡û
>W1711501636
MKRV01000287
Alphaproteobacteria
Alphaproteobacteria bacterium 65-37 [MKRV]
2039
1965
-
Val
GAC
[ENA]
¡û
>W1711511604
MLCO01000077
Alphaproteobacteria
Pseudoroseomonas deserti M3 [MLCO]
64804
64730
-
Val
CAC
[ENA]
¡û
>W1712049904
NFUS01000005
Alphaproteobacteria
Sphingomonas sp. IBVSS1 [NFUS]
80458
80384
-
Val
CAC
[ENA]
¡û
>C171033027
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
1453856
1453930
+
Val
CAC
-
¡û
>C171033122
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
956776
956702
-
Val
CAC
-
¡û
>C010057
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
2537909
2537983
+
Val
CAC
[Ensembl]
¡û
>WENV180296815
OBJA01003083
[OBJA] soil metagenome; sediment, water from around vicinity
8407
8333
-
Val
CAC
[ENA]
¢þ
>WENV181167072
OEIU01007658
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1881
1807
-
Val
CAC
[ENA]
¢þ
>WENV181384133
OFRH01021293
[OFRH] wastewater metagenome; Exp Tend NO 100WW
71
-1
-
Val
CAC
[ENA]
¢þ
>W141195247
AYTY01000078
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
94960
95034
+
Val
CAC
[ENA]
¡û
>W141227263
BAKW01000009
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
39385
39459
+
Val
CAC
[ENA]
¡û
>WENV183629500
OOGP01054742
[OOGP] marine metagenome; seawater
293
219
-
Val
CAC
[ENA]
¢þ
>WENV183741776
PJUG01009611
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
345
271
-
Val
CAC
[ENA]
¢þ
>WENV183742211
PJUH01001915
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
725
799
+
Val
CAC
[ENA]
¢þ
>WENV183742888
PJUI01004625
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
417
343
-
Val
CAC
[ENA]
¢þ
>WENV183744220
PJUK01002259
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
790
716
-
Val
CAC
[ENA]
¢þ
>WENV183811891
PVBE011625713
[PVBE] marine metagenome; water
849
923
+
Val
CAC
[ENA]
¢þ
>WENV170002016
AGFT01073106
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
221
295
+
Val
CAC
[ENA]
¢þ
>WENV170018580
BBPD01000033
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
25499
25425
-
Val
CAC
[ENA]
¢þ
>WENV170019683
BBPE01000054
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
13751
13825
+
Val
CAC
[ENA]
¢þ
>WENV170709620
LNFM01000533
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
72804
72730
-
Val
CAC
[ENA]
¢þ
>WENV170710111
LNFM01001161
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
40454
40380
-
Val
CAC
[ENA]
¢þ
>WENV170710179
LNFM01001265
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
53920
53994
+
Val
GAC
[ENA]
¢þ
>WENV170710346
LNFM01001566
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7445
7371
-
Val
CAC
[ENA]
¢þ
>WENV170710369
LNFM01001621
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18700
18774
+
Val
CAC
[ENA]
¢þ
>WENV170712203
LNFM01010807
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2683
2609
-
Val
CAC
[ENA]
¢þ
>WENV170714539
LNFM01080024
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
966
1040
+
Val
CAC
[ENA]
¢þ
>W09105113
AAOO01000008
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
477
551
+
Val
GAC
[ENA]
¡û
>C181221205
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
2537929
2538003
+
Val
CAC
-
¡û
>C191004256
AP018711
Alphaproteobacteria
Sphingosinicella microcystinivorans B9 [AP018711]
3017106
3017032
-
Val
CAC
-
¡û
>C191090660
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
2388668
2388742
+
Val
CAC
-
¡û
>W141731642
JNJH01000026
Alphaproteobacteria
Acidiphilium angustum ATCC 35903 [JNJH]
3591
3665
+
Val
CAC
[ENA]
¡û
>W141814321
JQGB01000026
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
54364
54290
-
Val
CAC
[ENA]
¡û
>W141814375
JQGC01000030
Alphaproteobacteria
Devosia riboflavina [JQGC]
113619
113693
+
Val
CAC
[ENA]
¡û
>W141815714
JQJH01000009
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
35488
35414
-
Val
CAC
[ENA]
¡û
>W1910181381
BJLY01000002
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
411973
412047
+
Val
CAC
[ENA]
¡û
>W1910181872
BJMK01000008
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
3121
3047
-
Val
CAC
[ENA]
¡û
>W1910183172
BJNM01000009
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
5926
5852
-
Val
CAC
[ENA]
¡û
>W1910913979
NHRY01000254
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
52631
52705
+
Val
CAC
[ENA]
¡û
>W1911139269
NOXT01000108
Alphaproteobacteria
Sandarakinorhabdus cyanobacteriorum TH057 [NOXT]
52836
52762
-
Val
CAC
[ENA]
¡û
>W1911541118
OOFM01000005
Alphaproteobacteria
[Ochrobactrum] soli FI11154 [OOFM]
1295314
1295240
-
Val
CAC
[ENA]
¡û
>W1810000614
BEWL01000006
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
58120
58046
-
Val
CAC
[ENA]
¡û
>W1810000667
BEWM01000003
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
452466
452392
-
Val
CAC
[ENA]
¡û
>W1810000809
BEWP01000006
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
118871
118797
-
Val
CAC
[ENA]
¡û
>C151006195
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
2802507
2802581
+
Val
CAC
[Ensembl]
¡û
>WENV11102088
AGFT01073106
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
221
295
+
Val
CAC
[ENA]
¡û
>C11100973
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
1397265
1397191
-
Val
GAC
[Ensembl]
¡û
>W1511620464
LCTG01000004
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
709515
709441
-
Val
CAC
[ENA]
¡û
>W121034266
AHKI01000030
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
343431
343505
+
Val
CAC
[ENA]
¡û
>W121123410
BADZ01000002
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
202335
202261
-
Val
CAC
[ENA]
¡û
>W121016312
AGQV01000002
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
88635
88709
+
Val
CAC
[ENA]
¡û
>W1610040651
BALE01000009
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
183720
183794
+
Val
CAC
[ENA]
¡û
>W1610076858
BCZB01000019
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
21890
21816
-
Val
CAC
[ENA]
¡û
>C131009968
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
2677930
2677856
-
Val
CAC
[Ensembl]
¡û
>W1610624045
LHZB01000121
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
143946
144020
+
Val
CAC
[ENA]
¡û
>W1610624117
LHZD01000010
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
77416
77490
+
Val
CAC
[ENA]
¡û
>W1610624175
LHZE01000080
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
127869
127943
+
Val
CAC
[ENA]
¡û
>W1610624281
LHZG01000177
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
699
625
-
Val
CAC
[ENA]
¡û
>W1610624536
LHZM01000080
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
9344
9270
-
Val
CAC
[ENA]
¡û
>W1610624602
LHZN01000142
Alphaproteobacteria
Gluconobacter albidus [LHZN]
87599
87673
+
Val
CAC
[ENA]
¡û
>W1610624642
LHZO01000064
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
45743
45817
+
Val
CAC
[ENA]
¡û
>W1610624689
LHZP01000028
Alphaproteobacteria
Gluconobacter roseus [LHZP]
321486
321412
-
Val
CAC
[ENA]
¡û
>W1610624762
LHZR01000105
Alphaproteobacteria
Gluconobacter albidus [LHZR]
85355
85429
+
Val
CAC
[ENA]
¡û
>W1610625003
LHZW01000055
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
321002
321076
+
Val
CAC
[ENA]
¡û
>W1610753943
LNEZ01000081
Alphaproteobacteria
Rhizobiales bacterium Ga0077548 [LNEZ]
6570
6644
+
Val
CAC
[ENA]
¡û
>W1610940237
LUTU01000001
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
732
658
-
Val
CAC
[ENA]
¡û
>W1710037849
BALE01000009
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
183720
183794
+
Val
CAC
[ENA]
¡û
>W1710074547
BCZB01000019
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
21890
21816
-
Val
CAC
[ENA]
¡û
>W1710597411
FTNE01000024
Alphaproteobacteria
Acidiphilium rubrum [FTNE]
55996
55922
-
Val
CAC
[ENA]
¡û
>W1710624334
JOMO01000011
Alphaproteobacteria
Acetobacter orientalis [JOMO]
217311
217385
+
Val
CAC
[ENA]
¡û
>W1710624713
JOPF01000004
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
110749
110823
+
Val
CAC
[ENA]
¡û
>W1710624794
JOPH01000003
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
2220
2146
-
Val
CAC
[ENA]
¡û
>W1710755163
LHZB01000121
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
143946
144020
+
Val
CAC
[ENA]
¡û
>W1710755235
LHZD01000010
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
77416
77490
+
Val
CAC
[ENA]
¡û
>W1710755293
LHZE01000080
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
127869
127943
+
Val
CAC
[ENA]
¡û
>W1710755399
LHZG01000177
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
699
625
-
Val
CAC
[ENA]
¡û
>W1710755452
LHZI01000205
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
476
402
-
Val
CAC
[ENA]
¡û
>W1710755464
LHZI01001426
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
2847
2921
+
Val
CAC
[ENA]
¡û
>W1710755654
LHZM01000080
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
9344
9270
-
Val
CAC
[ENA]
¡û
>W1710755720
LHZN01000142
Alphaproteobacteria
Gluconobacter albidus [LHZN]
87599
87673
+
Val
CAC
[ENA]
¡û
>W1710755760
LHZO01000064
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
45743
45817
+
Val
CAC
[ENA]
¡û
>W1710755807
LHZP01000028
Alphaproteobacteria
Gluconobacter roseus [LHZP]
321486
321412
-
Val
CAC
[ENA]
¡û
>W1710755880
LHZR01000105
Alphaproteobacteria
Gluconobacter albidus [LHZR]
85355
85429
+
Val
CAC
[ENA]
¡û
>W1710756121
LHZW01000055
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
321002
321076
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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