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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339308 (127 seq.)
>W1710869904
LMKB01000007
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
107818
107744
-
Gln
CTG
[ENA]
¡û
>W1710871364
LMLG01000005
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
2576
2650
+
Gln
CTG
[ENA]
¡û
>W1710872757
LMMF01000002
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
215772
215698
-
Gln
CTG
[ENA]
¡û
>W1710873129
LMMO01000001
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
599138
599210
+
Gln
CTG
[ENA]
¡û
>W1710874710
LMNV01000003
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
647824
647750
-
Gln
CTG
[ENA]
¡û
>W1710876042
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
2811
2885
+
Gln
CTG
[ENA]
¡û
>W1710876204
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
757246
757172
-
Gln
CTG
[ENA]
¡û
>W1710876261
LMPB01000003
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
2625
2697
+
Gln
CTG
[ENA]
¡û
>W1711079596
LSOE01000004
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
88960
88888
-
Gln
CTG
[ENA]
¡û
>W1711173311
LWCT01000035
Actinomycetota
Plantibacter sp. H53 [LWCT]
132539
132613
+
Gln
CTG
[ENA]
¡û
>W131227606
AUFH01000002
Actinomycetota
Bifidobacterium subtile DSM 20096 [AUFH]
434357
434431
+
Gln
CTG
[ENA]
¡û
>W1711360781
MDJY01000023
Actinomycetota
Clavibacter michiganensis [MDJY]
175111
175183
+
Gln
CTG
[ENA]
¡û
>W1711461544
MJGW01000017
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
235970
235896
-
Gln
CTG
[ENA]
¡û
>W1711724739
MTQL01000006
Actinomycetota
Leifsonia sp. ALI-44-B [MTQL]
732489
732417
-
Gln
CTG
[ENA]
¡û
>C171127451
CP021992
Actinomycetota
Cryobacterium sp. LW097 [CP021992]
2413710
2413638
-
Gln
CTG
-
¡û
>WENV180016054
FSTY01000416
[FSTY] metagenome; soil
4438
4510
+
Gln
CTG
[ENA]
¢þ
>WENV180016069
FSTY01000686
[FSTY] metagenome; soil
9525
9453
-
Gln
CTG
[ENA]
¢þ
>WENV180102903
OAOZ01047399
[OAOZ] marine metagenome; ENVO:00002010
271
345
+
Gln
CTG
[ENA]
¢þ
>WENV180209540
OBAL01003386
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
87
15
-
Gln
CTG
[ENA]
¢þ
>WENV180212383
OBAN01019810
[OBAN] marine metagenome; ENVO 00002150
476
404
-
Gln
CTG
[ENA]
¢þ
>WENV180356842
OBNL01049976
[OBNL] marine metagenome; ENVO:00002010
174
100
-
Gln
CTG
[ENA]
¢þ
>WENV180367074
OBOE01008497
[OBOE] marine metagenome; ENVO:00002010
155
81
-
Gln
CTG
[ENA]
¢þ
>WENV180382243
OBOS01168341
[OBOS] marine metagenome; ENVO 00002150
112
184
+
Gln
CTG
[ENA]
¢þ
>WENV180391318
OBPM01086394
[OBPM] marine metagenome; ENVO:00002010
167
95
-
Gln
CTG
[ENA]
¢þ
>WENV180394829
OBPS01103287
[OBPS] marine metagenome; ENVO:00002010 seawater
124
196
+
Gln
CTG
[ENA]
¢þ
>WENV180398075
OBPZ01069789
[OBPZ] marine metagenome; ENVO:00002010
352
278
-
Gln
CTG
[ENA]
¢þ
>WENV180399141
OBQG01001327
[OBQG] marine metagenome; ENV:00002010
422
348
-
Gln
CTG
[ENA]
¢þ
>WENV180399311
OBQH01002337
[OBQH] marine metagenome; ENV:00002010
180
254
+
Gln
CTG
[ENA]
¢þ
>WENV180399509
OBQO01000041
[OBQO] marine metagenome; ENVO:00002010
5060
5134
+
Gln
CTG
[ENA]
¢þ
>WENV181167201
OEIU01013647
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2960
2886
-
Gln
CTG
[ENA]
¢þ
>WENV181322148
OFKP01011499
[OFKP] marine metagenome; sea ice
12
86
+
Gln
CTG
[ENA]
¢þ
>WENV181322593
OFKT01003346
[OFKT] marine metagenome; sea ice
251
177
-
Gln
CTG
[ENA]
¢þ
>WENV181323840
OFKZ01012677
[OFKZ] marine metagenome; sea ice
481
555
+
Gln
CTG
[ENA]
¢þ
>WENV181324561
OFLF01002460
[OFLF] marine metagenome; melt pond
648
574
-
Gln
CTG
[ENA]
¢þ
>WENV181325671
OFLJ01012976
[OFLJ] seawater metagenome; seawater
572
646
+
Gln
CTG
[ENA]
¢þ
>WENV181393159
OFRX01061988
[OFRX] seawater metagenome; seawater
129
203
+
Gln
CTG
[ENA]
¢þ
>WENV183615152
OOEA01081916
[OOEA] marine metagenome; sea ice
194
120
-
Gln
CTG
[ENA]
¢þ
>WENV183615315
OOEB01002614
[OOEB] marine metagenome; sea ice
713
639
-
Gln
CTG
[ENA]
¢þ
>WENV183619523
OOFQ01013086
[OOFQ] marine metagenome; seawater
572
646
+
Gln
CTG
[ENA]
¢þ
>WENV183620885
OOFT01000004
[OOFT] marine metagenome; sea ice
36383
36457
+
Gln
CTG
[ENA]
¢þ
>WENV183622895
OOFW01038466
[OOFW] marine metagenome; sea ice
176
102
-
Gln
CTG
[ENA]
¢þ
>WENV183623218
OOFX01034455
[OOFX] marine metagenome; sea ice
205
277
+
Gln
CTG
[ENA]
¢þ
>WENV183624370
OOGD01003888
[OOGD] marine metagenome; sea ice
502
576
+
Gln
CTG
[ENA]
¢þ
>WENV183625401
OOGF01023580
[OOGF] marine metagenome; seawater
534
460
-
Gln
CTG
[ENA]
¢þ
>WENV183625855
OOGG01053601
[OOGG] marine metagenome; sea ice
304
378
+
Gln
CTG
[ENA]
¢þ
>WENV183629539
OOGP01064014
[OOGP] marine metagenome; seawater
129
203
+
Gln
CTG
[ENA]
¢þ
>WENV170567506
FLMP01001249
[FLMP] seawater metagenome; seawater
7700
7626
-
Gln
CTG
[ENA]
¢þ
>WENV170598278
FUWD010030884
[FUWD] metagenome; unknown
398
324
-
Gln
CTG
[ENA]
¢þ
>WENV170605950
FUWD010572304
[FUWD] metagenome; unknown
82
8
-
Gln
CTG
[ENA]
¢þ
>WENV170627176
FUWD013231783
[FUWD] metagenome; unknown
24314
24240
-
Gln
CTG
[ENA]
¢þ
>WENV170632181
FUWD013379091
[FUWD] metagenome; unknown
24314
24240
-
Gln
CTG
[ENA]
¢þ
>WENV170700593
LIDZ01015668
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
19250
19176
-
Gln
CTG
[ENA]
¢þ
>WENV170784298
MCHG01000527
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
6768
6696
-
Gln
CTG
[ENA]
¢þ
>WENV170951524
MEHZ011557766
[MEHZ] marine metagenome; marine surface water
627
701
+
Gln
CTG
[ENA]
¢þ
>C181143946
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1956923
1956851
-
Gln
CTG
-
¡û
>C191011695
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
483160
483232
+
Gln
CTG
-
¡û
>C191056533
CP028137
Actinomycetota
Rathayibacter festucae DSM 15932 [CP028137]
2160027
2159955
-
Gln
CTG
-
¡û
>C191071509
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
4222824
4222896
+
Gln
CTG
-
¡û
>C191100990
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2455925
2455999
+
Gln
CTG
-
¡û
>C191182553
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
3576471
3576543
+
Gln
CTG
-
¡û
>W1910405319
FVBY01002460
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 159 [FVBY]
125
197
+
Gln
CTG
[ENA]
¡û
>W1910785520
MQTR01000183
Actinomycetota
Cryobacterium sp. SO1 [MQTR]
97747
97819
+
Gln
CTG
[ENA]
¡û
>W1910839650
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
504368
504440
+
Gln
CTG
[ENA]
¡û
>W1910839693
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
120187
120259
+
Gln
CTG
[ENA]
¡û
>W1910839845
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
3245817
3245745
-
Gln
CTG
[ENA]
¡û
>W1910839869
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
2929
2857
-
Gln
CTG
[ENA]
¡û
>W1911798566
QYRT01000004
Actinomycetota
Subtercola vilae DB165 [QYRT]
164425
164497
+
Gln
CTG
[ENA]
¡û
>W1810168597
PJJJ01000017
Actinomycetota
Cryobacterium sp. Y82 [PJJJ]
40101
40173
+
Gln
CTG
[ENA]
¡û
>W1810168674
PJJK01000116
Actinomycetota
Cryobacterium sp. Y62 [PJJK]
29568
29496
-
Gln
CTG
[ENA]
¡û
>W1810168705
PJJL01000070
Actinomycetota
Cryobacterium sp. Y57 [PJJL]
249085
249157
+
Gln
CTG
[ENA]
¡û
>W1810168761
PJJM01000101
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
80149
80221
+
Gln
CTG
[ENA]
¡û
>W1810168807
PJJN01000036
Actinomycetota
Cryobacterium sp. Y29 [PJJN]
146484
146412
-
Gln
CTG
[ENA]
¡û
>W1810168852
PJJO01000061
Actinomycetota
Cryobacterium sp. Y11 [PJJO]
450751
450823
+
Gln
CTG
[ENA]
¡û
>W1810168892
PJJP01000039
Actinomycetota
Cryobacterium sp. N22 [PJJP]
578277
578205
-
Gln
CTG
[ENA]
¡û
>W1810168935
PJJQ01000034
Actinomycetota
Cryobacterium sp. N21 [PJJQ]
460286
460358
+
Gln
CTG
[ENA]
¡û
>W1810168950
PJJR01000041
Actinomycetota
Cryobacterium sp. N19 [PJJR]
58216
58288
+
Gln
CTG
[ENA]
¡û
>W1810169029
PJJS01000054
Actinomycetota
Cryobacterium sp. M96 [PJJS]
64339
64411
+
Gln
CTG
[ENA]
¡û
>W1810169056
PJJT01000086
Actinomycetota
Cryobacterium sp. M91 [PJJT]
92797
92725
-
Gln
CTG
[ENA]
¡û
>W1810169166
PJJV01000081
Actinomycetota
Cryobacterium sp. M23 [PJJV]
104873
104945
+
Gln
CTG
[ENA]
¡û
>W1810169198
PJJW01000039
Actinomycetota
Cryobacterium sp. M15 [PJJW]
237167
237239
+
Gln
CTG
[ENA]
¡û
>W1810169249
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
922155
922083
-
Gln
CTG
[ENA]
¡û
>W1810240364
PPTG01000021
Actinomycetota
Cryobacterium aureum Hh31 [PPTG]
76139
76211
+
Gln
CTG
[ENA]
¡û
>W1810242620
PPXD01000026
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
93223
93151
-
Gln
CTG
[ENA]
¡û
>W1810242648
PPXE01000020
Actinomycetota
Cryobacterium zongtaii TMN-39-1 [PPXE]
96722
96650
-
Gln
CTG
[ENA]
¡û
>W1810242677
PPXF01000011
Actinomycetota
Cryobacterium zongtaii TMB1-8 [PPXF]
91023
90951
-
Gln
CTG
[ENA]
¡û
>W1810277313
PSTT01000028
Actinomycetota
Subtercola sp. Z020 [PSTT]
449
521
+
Gln
CTG
[ENA]
¡û
>W1810282096
PSXY01000036
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
11259
11187
-
Gln
CTG
[ENA]
¡û
>W1810569031
QEFB01000001
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
655054
654982
-
Gln
CTG
[ENA]
¡û
>W1810627280
QHLY01000012
Actinomycetota
Cryobacterium arcticum SK-1 [QHLY]
1177172
1177100
-
Gln
CTG
[ENA]
¡û
>SRA1015260
SRR023845.525549
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
11
83
+
Gln
CTG
[SRA]
>SRA1016163
SRR023846.376186
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
171
99
-
Gln
CTG
[SRA]
>SRA1023545
SRR035084.119741
454 Sequencing (SRP001805)
98
172
+
Gln
CTG
[SRA]
>SRA1023714
SRR035084.158510
454 Sequencing (SRP001805)
88
14
-
Gln
CTG
[SRA]
>SRA1023776
SRR035084.173600
454 Sequencing (SRP001805)
88
14
-
Gln
CTG
[SRA]
>SRA1025204
SRR035084.514300
454 Sequencing (SRP001805)
400
326
-
Gln
CTG
[SRA]
>SRA1045629
SRR035093.137275
454 Sequencing (SRP001814)
208
282
+
Gln
CTG
[SRA]
>SRA1046319
SRR035093.278528
454 Sequencing (SRP001814)
66
140
+
Gln
CTG
[SRA]
>SRA1046828
SRR035093.394459
454 Sequencing (SRP001814)
212
286
+
Gln
CTG
[SRA]
>SRA1047148
SRR035093.468827
454 Sequencing (SRP001814)
232
158
-
Gln
CTG
[SRA]
>SRA1047247
SRR035093.494448
454 Sequencing (SRP001814)
235
309
+
Gln
CTG
[SRA]
>W1511352445
JROD01000008
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
68464
68536
+
Gln
CTG
[ENA]
¡û
>W1511524517
JYFC01000005
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
231853
231781
-
Gln
CTG
[ENA]
¡û
>C161073116
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
1427240
1427314
+
Gln
CTG
[Ensembl]
¡û
>C161095697
CP016282
Actinomycetota
Cryobacterium arcticum PAMC 27867 [CP016282]
2522186
2522114
-
Gln
CTG
[Ensembl]
¡û
>W121063462
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
424034
424108
+
Gln
CTG
[ENA]
¡û
>W1610620587
LHOZ01000006
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
18786
18712
-
Gln
CTG
[ENA]
¡û
>W1610732250
LMKB01000007
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
107818
107744
-
Gln
CTG
[ENA]
¡û
>W1610733710
LMLG01000005
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
2576
2650
+
Gln
CTG
[ENA]
¡û
>W1610735103
LMMF01000002
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
215772
215698
-
Gln
CTG
[ENA]
¡û
>W1610735475
LMMO01000001
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
599138
599210
+
Gln
CTG
[ENA]
¡û
>W1610737056
LMNV01000003
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
647824
647750
-
Gln
CTG
[ENA]
¡û
>W1610738388
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
2811
2885
+
Gln
CTG
[ENA]
¡û
>W1610738550
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
757246
757172
-
Gln
CTG
[ENA]
¡û
>W1610738607
LMPB01000003
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
2625
2697
+
Gln
CTG
[ENA]
¡û
>W1610918506
LSOE01000004
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
88960
88888
-
Gln
CTG
[ENA]
¡û
>W1610981916
LWCT01000035
Actinomycetota
Plantibacter sp. H53 [LWCT]
132539
132613
+
Gln
CTG
[ENA]
¡û
>W1710520670
FNFU01000015
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
6111
6039
-
Gln
CTG
[ENA]
¡û
>W1710523547
FNIB01000009
Actinomycetota
Cryobacterium flavum [FNIB]
111559
111631
+
Gln
CTG
[ENA]
¡û
>W1710546918
FOCN01000004
Actinomycetota
Cryobacterium luteum [FOCN]
265306
265378
+
Gln
CTG
[ENA]
¡û
>W1710563679
FOPW01000006
Actinomycetota
Cryobacterium levicorallinum [FOPW]
92813
92741
-
Gln
CTG
[ENA]
¡û
>W1710570909
FOVM01000002
Actinomycetota
Mycetocola miduiensis [FOVM]
131759
131831
+
Gln
CTG
[ENA]
¡û
>W1710603948
FUZO01000001
Actinomycetota
Plantibacter cousiniae [FUZO]
1912833
1912907
+
Gln
CTG
[ENA]
¡û
>W1710604001
FUZP01000001
Actinomycetota
Okibacterium fritillariae [FUZP]
1304527
1304599
+
Gln
CTG
[ENA]
¡û
>W1710604643
FVZG01000001
Actinomycetota
Clavibacter michiganensis [FVZG]
1049336
1049408
+
Gln
CTG
[ENA]
¡û
>W1710608057
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
677772
677846
+
Gln
CTG
[ENA]
¡û
>W1710609338
FXWJ01000002
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
707570
707496
-
Gln
CTG
[ENA]
¡û
>W1710748281
LHOZ01000006
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
18786
18712
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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