This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339368 (30 seq.)
>C025757
AE000520
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [AE000520]
697543
697472
-
His
GTG
[Ensembl]
¡û
>W141064689
AQCF01000035
Spirochaetota
Treponema phagedenis 4A [AQCF]
8067
8139
+
His
GTG
[ENA]
¡û
>WENV180721646
ODGL01004306
[ODGL] human metagenome; G_DNA_Subgingival plaque
946
1018
+
His
GTG
[ENA]
¢þ
>WENV180976882
ODUY01324465
[ODUY] human metagenome; G_DNA_Supragingival plaque
98
26
-
His
GTG
[ENA]
¢þ
>WENV181073965
OEAO01001878
[OEAO] human metagenome; G_DNA_Tongue dorsum
9634
9706
+
His
GTG
[ENA]
¢þ
>WENV183714222
PDWI01174001
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
669
597
-
His
GTG
[ENA]
¢þ
>C191179256
CP040555
Spirochaetota
Treponema pallidum subsp. pallidum X-4 [CP040555]
699327
699255
-
His
GTG
-
¡û
>C151004505
CP003679
Spirochaetota
Treponema pallidum subsp. pallidum str. Sea 81-4 [CP003679]
698717
698645
-
His
GTG
[Ensembl]
¡û
>W1510074545
CDNC01000015
Spirochaetota
Treponema phagedenis V1 [CDNC]
32584
32656
+
His
GTG
[ENA]
¡û
>C10113606
CP001752
Spirochaetota
Treponema pallidum subsp. pallidum str. Chicago [CP001752]
698789
698717
-
His
GTG
[Ensembl]
¡û
>C10113650
CP000805
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP000805]
698997
698925
-
His
GTG
[Ensembl]
¡û
>C121002424
CP002374
Spirochaetota
Treponema pallidum subsp. pertenue str. SamoaD [CP002374]
699130
699058
-
His
GTG
[Ensembl]
¡û
>C121002469
CP002375
Spirochaetota
Treponema pallidum subsp. pertenue str. CDC2 [CP002375]
699584
699512
-
His
GTG
[Ensembl]
¡û
>C121002514
CP002376
Spirochaetota
Treponema pallidum subsp. pertenue str. Gauthier [CP002376]
699317
699245
-
His
GTG
[Ensembl]
¡û
>C121006119
CP003115
Spirochaetota
Treponema pallidum subsp. pallidum DAL-1 [CP003115]
699478
699406
-
His
GTG
[Ensembl]
¡û
>C161017277
CP007548
Spirochaetota
Treponema pallidum subsp. endemicum str. Bosnia A [CP007548]
697117
697045
-
His
GTG
[Ensembl]
¡û
>C161028042
CP010558
Spirochaetota
Treponema pallidum subsp. pallidum Chicago Population [CP010558]
699016
698944
-
His
GTG
-
¡û
>C161028086
CP010559
Spirochaetota
Treponema pallidum subsp. pallidum CDC-A [CP010559]
699180
699108
-
His
GTG
-
¡û
>C161028130
CP010560
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010560]
697932
697860
-
His
GTG
-
¡û
>C161028174
CP010561
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010561]
699193
699121
-
His
GTG
-
¡û
>C161028218
CP010562
Spirochaetota
Treponema pallidum subsp. pallidum UW074B [CP010562]
699056
698984
-
His
GTG
-
¡û
>C161028262
CP010563
Spirochaetota
Treponema pallidum subsp. pallidum UW189B [CP010563]
699275
699203
-
His
GTG
-
¡û
>C161028307
CP010564
Spirochaetota
Treponema pallidum subsp. pallidum UW228B [CP010564]
699518
699446
-
His
GTG
-
¡û
>C161028351
CP010565
Spirochaetota
Treponema pallidum subsp. pallidum UW254B [CP010565]
699322
699250
-
His
GTG
-
¡û
>C161028395
CP010566
Spirochaetota
Treponema pallidum subsp. pallidum UW391B [CP010566]
699261
699189
-
His
GTG
-
¡û
>C161084208
CP015162
Spirochaetota
Treponema pallidum subsp. pallidum Amoy [CP015162]
562736
562664
-
His
GTG
-
¡û
>C131001881
CP003064
Spirochaetota
Treponema pallidum subsp. pallidum str. Mexico A [CP003064]
699520
699448
-
His
GTG
[Ensembl]
¡û
>C131009512
CP003902
Spirochaetota
Treponema pallidum str. Fribourg-Blanc [CP003902]
699850
699778
-
His
GTG
[Ensembl]
¡û
>C131011373
CP004010
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [CP004010]
699140
699068
-
His
GTG
-
¡û
>C131011417
CP004011
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP004011]
699026
698954
-
His
GTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK