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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339374 (38 seq.)
>W1710868353
LMJA01000004
Actinomycetota
Mycobacterium sp. Root265 [LMJA]
128038
128110
+
Gln
CTG
[ENA]
¡û
>W1711004889
LQMX01000002
Actinomycetota
Mycolicibacterium neoaurum [LQMX]
40854
40782
-
Gln
CTG
[ENA]
¡û
>W1711773472
MVIH01000001
Actinomycetota
Mycolicibacterium rhodesiae [MVIH]
256508
256582
+
Gln
CTG
[ENA]
¡û
>W131228244
AUFT01000020
Actinomycetota
Nakamurella lactea DSM 19367 [AUFT]
87406
87478
+
Gln
CTG
[ENA]
¡û
>W131055265
ANBI01000086
Actinomycetota
Mycolicibacterium neoaurum VKM Ac-1815D [ANBI]
41064
40992
-
Gln
CTG
[ENA]
¡û
>W131092069
AOHQ01000144
Actinomycetota
Mycobacterium sp. VKM Ac-1816D [AOHQ]
345496
345568
+
Gln
CTG
[ENA]
¡û
>W131252556
CBMO010000072
Actinomycetota
Mycolicibacterium septicum DSM 44393 [CBMO]
21536
21610
+
Gln
CTG
[ENA]
¡û
>W141264008
CCDR010000003
Actinomycetota
Mycolicibacterium neoaurum [CCDR]
35291
35363
+
Gln
CTG
[ENA]
¡û
>W141284115
JALN02000001
Actinomycetota
Mycolicibacterium aromaticivorans JS19b1 = JCM 16368 [JALN]
780380
780306
-
Gln
CTG
[ENA]
¡û
>WENV183665879
ORJL010500101
[ORJL] groundwater metagenome; groundwater
436
364
-
Gln
CTG
[ENA]
¢þ
>C181200122
CP031414
Actinomycetota
Mycolicibacterium neoaurum HGMS2 [CP031414]
3081990
3081918
-
Gln
CTG
-
¡û
>C191120864
CP034170
Actinomycetota
Nakamurella antarctica S14-144 [CP034170]
2326345
2326273
-
Gln
CTG
-
¡û
>W141695428
JMDW01000011
Actinomycetota
Mycolicibacterium neoaurum ATCC 25795 [JMDW]
40431
40359
-
Gln
CTG
[ENA]
¡û
>W09109503
ABUH01000005
Actinomycetota
Nakamurella multipartita DSM 44233 [ABUH]
182705
182777
+
Gln
CTG
[ENA]
¡û
>W141817531
JQKU01000007
Actinomycetota
Mycobacterium sp. UNC280MFTsu5.1 [JQKU]
90555
90627
+
Gln
CTG
[ENA]
¡û
>W141818789
JQLT01000010
Actinomycetota
Mycobacterium sp. UNCCL9 [JQLT]
41966
41894
-
Gln
CTG
[ENA]
¡û
>C141010685
CP006936
Actinomycetota
Mycolicibacterium neoaurum VKM Ac-1815D [CP006936]
2242000
2242072
+
Gln
CTG
-
¡û
>W1911141547
NOZR01000002
Actinomycetota
Mycolicibacterium sphagni ATCC 33027 [NOZR]
208518
208446
-
Gln
CTG
[ENA]
¡û
>W1911765396
QXCQ01000091
Actinomycetota
Nakamurella silvestris DSM 102309 [QXCQ]
241994
241922
-
Gln
CTG
[ENA]
¡û
>W1810057153
PDHO01000006
Actinomycetota
Mycobacterium sp. ENV421 [PDHO]
179585
179513
-
Gln
CTG
[ENA]
¡û
>W1810338897
PUTX01000956
Actinomycetota
Mycobacterium sp. ITM-2016-00316 [PUTX]
15907
15979
+
Gln
CTG
[ENA]
¡û
>W1810487059
QAYH01000009
Actinomycetota
Mycobacterium sp. YR782 [QAYH]
223570
223498
-
Gln
CTG
[ENA]
¡û
>W1810531636
QCXS01000002
Actinomycetota
Nakamurella deserti 12Sc4-1 [QCXS]
1869826
1869754
-
Gln
CTG
[ENA]
¡û
>C10109871
CP001737
Actinomycetota
Nakamurella multipartita DSM 44233 [CP001737]
1632110
1632182
+
Gln
CTG
[Ensembl]
¡û
>W1511511194
JXST01000024
Actinomycetota
Mycolicibacterium llatzerense CLUC14 [JXST]
6422
6350
-
Gln
CTG
[ENA]
¡û
>W1511519175
JXYZ01000003
Actinomycetota
Mycolicibacterium neoaurum MN4 [JXYZ]
41080
41008
-
Gln
CTG
[ENA]
¡û
>W11181039
AGIQ01000001
Actinomycetota
Mycolicibacterium rhodesiae JS60 [AGIQ]
1926059
1926133
+
Gln
CTG
[ENA]
¡û
>C161031090
CP011022
Actinomycetota
Mycolicibacterium neoaurum NRRL B-3805 [CP011022]
2241999
2242071
+
Gln
CTG
-
¡û
>C161089635
CP015596
Actinomycetota
Mycobacterium adipatum YC-RL4 [CP015596]
4295762
4295690
-
Gln
CTG
[Ensembl]
¡û
>W1610050350
BBFT01000221
Actinomycetota
Mycolicibacterium flavescens JCM 14741 [BBFT]
3282
3356
+
Gln
CTG
[ENA]
¡û
>W1610051675
BBHC01001522
Actinomycetota
Mycolicibacterium aromaticivorans JS19b1 = JCM 16368 [BBHC]
901
827
-
Gln
CTG
[ENA]
¡û
>W1610730699
LMJA01000004
Actinomycetota
Mycobacterium sp. Root265 [LMJA]
128038
128110
+
Gln
CTG
[ENA]
¡û
>W1610855539
LQMX01000002
Actinomycetota
Mycolicibacterium neoaurum [LQMX]
40854
40782
-
Gln
CTG
[ENA]
¡û
>W1710046749
BBFT01000221
Actinomycetota
Mycolicibacterium flavescens JCM 14741 [BBFT]
3282
3356
+
Gln
CTG
[ENA]
¡û
>W1710048053
BBHC01001522
Actinomycetota
Mycolicibacterium aromaticivorans JS19b1 = JCM 16368 [BBHC]
901
827
-
Gln
CTG
[ENA]
¡û
>W1710505867
FMUB01000004
Actinomycetota
Mycolicibacterium fluoranthenivorans UNC267MFSha1.1M11 [FMUB]
381719
381645
-
Gln
CTG
[ENA]
¡û
>W1710512264
FMZG01000008
Actinomycetota
Mycolicibacterium neoaurum 365mftsu [FMZG]
184998
185070
+
Gln
CTG
[ENA]
¡û
>W1710767027
LIPZ01000006
Actinomycetota
Mycolicibacterium llatzerense [LIPZ]
101345
101273
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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