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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339390 (41 seq.)
>W1711133738
LUWY01000074
Bacillota
Lactiplantibacillus plantarum [LUWY]
6016
5943
-
Gln
TTG
[ENA]
¡û
>W131226323
AUEH01000040
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AUEH]
5954
6027
+
Gln
TTG
[ENA]
¡û
>WENV183511389
OMJG01000158
[OMJG] food metagenome; Cotija cheese
5521
5594
+
Gln
TTG
[ENA]
¢þ
>WENV183560981
OOBU01004191
[OOBU] human gut metagenome; human gut
205
132
-
Gln
TTG
[ENA]
¢þ
>PL191000466
CP025208
Firmicutes
Lactobacillus sakei WiKim0074 plasmid:pLSW74_2 (CP025208)
27363
27290
-
Gln
TTG
[ENA]
¡û
>C181033664
CP018867
Bacillota
Companilactobacillus alimentarius DSM 20249 [CP018867]
1249004
1248931
-
Gln
TTG
-
¡û
>C191182267
CP040736
Bacillota
Companilactobacillus futsaii Y97 [CP040736]
525966
526039
+
Gln
TTG
-
¡û
>W1910141188
BIFE01000033
Bacillota
Lactiplantibacillus plantarum KB1253 [BIFE]
1654
1727
+
Gln
TTG
[ENA]
¡û
>W1910142255
BIFW01000010
Bacillota
Companilactobacillus musae NBRC 112868 [BIFW]
41214
41287
+
Gln
TTG
[ENA]
¡û
>W1910177509
BJDU01000004
Bacillota
Companilactobacillus formosensis NBRC 109509 [BJDU]
114805
114878
+
Gln
TTG
[ENA]
¡û
>W1910927784
NIPR01000034
Bacillota
Companilactobacillus nuruki SYF10-1a [NIPR]
123498
123571
+
Gln
TTG
[ENA]
¡û
>W1911631978
PUFL01000094
Bacillota
Lentilactobacillus parakefiri DSM 10551 [PUFL]
1298
1225
-
Gln
TTG
[ENA]
¡û
>W1911632056
PUFN01000007
Bacillota
Companilactobacillus farciminis ATCC 29644 [PUFN]
131255
131328
+
Gln
TTG
[ENA]
¡û
>W1911632211
PUFP01000075
Bacillota
Lentilactobacillus buchneri ATCC 4005 [PUFP]
8324
8251
-
Gln
TTG
[ENA]
¡û
>W1911747336
QWDI01000004
Bacillota
Companilactobacillus formosensis S215 [QWDI]
115408
115481
+
Gln
TTG
[ENA]
¡û
>C151089908
CP012034
Bacillota
Companilactobacillus ginsenosidimutans EMML 3041 [CP012034]
2272721
2272794
+
Gln
TTG
[Ensembl]
¡û
>C11112204
CP002652
Bacillota
Lentilactobacillus buchneri NRRL B-30929 [CP002652]
101056
101129
+
Gln
TTG
[Ensembl]
¡û
>C161038130
CP011952
Bacillota
Companilactobacillus farciminis CNCM-I-3699-S [CP011952]
1336907
1336980
+
Gln
TTG
-
¡û
>C161040281
CP012177
Bacillota
Companilactobacillus farciminis CNCM-I-3699-R [CP012177]
1337624
1337697
+
Gln
TTG
-
¡û
>W1610034105
AZDM01000003
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
7814
7741
-
Gln
TTG
[ENA]
¡û
>W1610034357
AZDR01000007
Bacillota
Companilactobacillus farciminis KCTC 3681 = DSM 20184 [AZDR]
81505
81578
+
Gln
TTG
[ENA]
¡û
>W1610034771
AZDZ01000019
Bacillota
Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 [AZDZ]
323422
323495
+
Gln
TTG
[ENA]
¡û
>W1610035472
AZEN01000266
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
1688
1761
+
Gln
TTG
[ENA]
¡û
>W1610036054
AZEZ01000095
Bacillota
Companilactobacillus mindensis DSM 14500 [AZEZ]
101621
101548
-
Gln
TTG
[ENA]
¡û
>W1610036100
AZFA01000036
Bacillota
Companilactobacillus versmoldensis DSM 14857 = KCTC 3814 [AZFA]
2420
2347
-
Gln
TTG
[ENA]
¡û
>W1610037207
AZFW01000128
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
5711
5784
+
Gln
TTG
[ENA]
¡û
>W1610037311
AZFY01000100
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
9149
9074
-
Gln
TTG
[ENA]
¡û
>W1610060771
BCLJ01000008
Bacillota
Companilactobacillus farciminis [BCLJ]
5433
5506
+
Gln
TTG
[ENA]
¡û
>W1610529854
JQCK01000012
Bacillota
Companilactobacillus crustorum [JQCK]
21318
21245
-
Gln
TTG
[ENA]
¡û
>W1610944811
LUWY01000074
Bacillota
Lactiplantibacillus plantarum [LUWY]
6016
5943
-
Gln
TTG
[ENA]
¡û
>W1710031232
AZDM01000003
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
7814
7741
-
Gln
TTG
[ENA]
¡û
>W1710031484
AZDR01000007
Bacillota
Companilactobacillus farciminis KCTC 3681 = DSM 20184 [AZDR]
81505
81578
+
Gln
TTG
[ENA]
¡û
>W1710031898
AZDZ01000019
Bacillota
Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 [AZDZ]
323422
323495
+
Gln
TTG
[ENA]
¡û
>W1710032511
AZEN01000266
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
1688
1761
+
Gln
TTG
[ENA]
¡û
>W1710033093
AZEZ01000095
Bacillota
Companilactobacillus mindensis DSM 14500 [AZEZ]
101621
101548
-
Gln
TTG
[ENA]
¡û
>W1710033139
AZFA01000036
Bacillota
Companilactobacillus versmoldensis DSM 14857 = KCTC 3814 [AZFA]
2420
2347
-
Gln
TTG
[ENA]
¡û
>W1710034246
AZFW01000128
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
5711
5784
+
Gln
TTG
[ENA]
¡û
>W1710034350
AZFY01000100
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
9149
9074
-
Gln
TTG
[ENA]
¡û
>W1710058067
BCLJ01000008
Bacillota
Companilactobacillus farciminis [BCLJ]
5433
5506
+
Gln
TTG
[ENA]
¡û
>W1710081727
BDGB01000042
Bacillota
Lentilactobacillus parakefiri [BDGB]
6041
6114
+
Gln
TTG
[ENA]
¡û
>W1710631444
JQCK01000012
Bacillota
Companilactobacillus crustorum [JQCK]
21318
21245
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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