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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339477 (99 seq.)
>W1710858280
LMBE01000015
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBE]
912
986
+
Glu
CTC
[ENA]
¡û
>W1710858310
LMBF01000023
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBF]
129
203
+
Glu
CTC
[ENA]
¡û
>W1710858325
LMBG01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBG]
44032
43958
-
Glu
CTC
[ENA]
¡û
>W1710858384
LMBH01000132
Campylobacterota
Campylobacter fetus subsp. fetus [LMBH]
1995
1921
-
Glu
CTC
[ENA]
¡û
>W1710858422
LMBI01000021
Campylobacterota
Campylobacter fetus subsp. venerealis [LMBI]
306
380
+
Glu
CTC
[ENA]
¡û
>W1711023570
LRAL01000002
Campylobacterota
Campylobacter fetus subsp. fetus BT 10/98 [LRAL]
305152
305078
-
Glu
CTC
[ENA]
¡û
>W1711023634
LRAM01000013
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/596 [LRAM]
486
560
+
Glu
CTC
[ENA]
¡û
>W1711029034
LRER01000020
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi97/532 [LRER]
309
383
+
Glu
CTC
[ENA]
¡û
>W1711029069
LRES01000013
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
44945
44871
-
Glu
CTC
[ENA]
¡û
>W1711029103
LRET01000014
Campylobacterota
Campylobacter fetus subsp. venerealis cfvB10 [LRET]
927
1001
+
Glu
CTC
[ENA]
¡û
>W1711029128
LREX01000002
Campylobacterota
Campylobacter fetus subsp. venerealis [LREX]
148045
147971
-
Glu
CTC
[ENA]
¡û
>W1711029178
LREY01000012
Campylobacterota
Campylobacter fetus subsp. venerealis [LREY]
45060
44986
-
Glu
CTC
[ENA]
¡û
>W1711029206
LREZ01000005
Campylobacterota
Campylobacter fetus subsp. venerealis [LREZ]
310
384
+
Glu
CTC
[ENA]
¡û
>W1711029247
LRFA01000011
Campylobacterota
Campylobacter fetus subsp. venerealis [LRFA]
44961
44887
-
Glu
CTC
[ENA]
¡û
>W1711056061
LRVK01000076
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi02/298 [LRVK]
486
560
+
Glu
CTC
[ENA]
¡û
>W1711056080
LRVL01000003
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi92/203 [LRVL]
136573
136499
-
Glu
CTC
[ENA]
¡û
>W1711485998
MKEI01000036
Campylobacterota
Campylobacter fetus subsp. fetus [MKEI]
2441
2515
+
Glu
CTC
[ENA]
¡û
>C171032298
CP014568
Campylobacterota
Campylobacter fetus subsp. venerealis 01/165 [CP014568]
646831
646905
+
Glu
CTC
-
¡û
>W131196571
ASTK01000209
Campylobacterota
Campylobacter fetus subsp. venerealis bv. intermedius str. 99541 [ASTK]
74
1
-
Glu
CTC
[ENA]
¡û
>C005625
CP000487
Campylobacterota
Campylobacter fetus subsp. fetus 82-40 [CP000487]
611179
611253
+
Glu
CTC
[Ensembl]
¡û
>W141021515
AJMC01000024
Campylobacterota
Campylobacter fetus subsp. venerealis B6 [AJMC]
181
255
+
Glu
CTC
[ENA]
¡û
>W141022204
AJSG01000024
Campylobacterota
Campylobacter fetus subsp. venerealis 642-21 [AJSG]
616
690
+
Glu
CTC
[ENA]
¡û
>W141052963
ANNE01000012
Campylobacterota
Campylobacter concisus UNSW3 [ANNE]
289
363
+
Glu
CTC
[ENA]
¡û
>WENV180551748
OCJG01045588
[OCJG] human oral metagenome; human oral
10
84
+
Glu
CTC
[ENA]
¢þ
>WENV183613888
OODU01015791
[OODU] human gut metagenome; human gut
567
641
+
Glu
CTC
[ENA]
¢þ
>C181148744
CP027287
Campylobacterota
Campylobacter fetus subsp. testudinum 772 [CP027287]
661915
661989
+
Glu
CTC
-
¡û
>C181212923
LS483431
Campylobacterota
Campylobacter fetus subsp. fetus NCTC10842 [LS483431]
604778
604852
+
Glu
CTC
-
¡û
>W09104907
AANR03000001
Campylobacterota
Campylobacter fetus subsp. fetus 82-40 [AANR]
611179
611253
+
Glu
CTC
[ENA]
¡û
>W09127819
ACLG01001182
Campylobacterota
Campylobacter fetus subsp. venerealis str. Azul-94 [ACLG]
5196
5122
-
Glu
CTC
[ENA]
¡û
>C141008967
CP006833
Campylobacterota
Campylobacter fetus subsp. testudinum 03-427 [CP006833]
613560
613634
+
Glu
CTC
-
¡û
>C141011410
CP006999
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/293 [CP006999]
611859
611933
+
Glu
CTC
[Ensembl]
¡û
>W1910574034
JPPC01000012
Campylobacterota
Campylobacter fetus subsp. venerealis TD [JPPC]
309
383
+
Glu
CTC
[ENA]
¡û
>W1910574071
JPQC01000011
Campylobacterota
Campylobacter fetus subsp. venerealis 66Y [JPQC]
495
569
+
Glu
CTC
[ENA]
¡û
>W1910640571
LSZN01000234
Campylobacterota
Campylobacter fetus subsp. fetus cff110800-21-2 [LSZN]
310
384
+
Glu
CTC
[ENA]
¡û
>W1810672829
QJTR01000030
Campylobacterota
Campylobacter fetus subsp. fetus HC1 [QJTR]
462
536
+
Glu
CTC
[ENA]
¡û
>W1810672872
QJTS01000030
Campylobacterota
Campylobacter fetus subsp. fetus HC2 [QJTS]
45056
44982
-
Glu
CTC
[ENA]
¡û
>C151037756
CP008808
Campylobacterota
Campylobacter fetus subsp. fetus 04/554 [CP008808]
607854
607928
+
Glu
CTC
[Ensembl]
¡û
>C151037798
CP008810
Campylobacterota
Campylobacter fetus subsp. venerealis 97/608 [CP008810]
644554
644628
+
Glu
CTC
[Ensembl]
¡û
>C151045942
CP009226
Campylobacterota
Campylobacter fetus subsp. testudinum pet-3 [CP009226]
624207
624281
+
Glu
CTC
[Ensembl]
¡û
>C151100035
HG004426
Campylobacterota
Campylobacter fetus subsp. venerealis str. 84-112 [HG004426]
640448
640522
+
Glu
CTC
[Ensembl]
¡û
>W1511349080
JRKX01000027
Campylobacterota
Campylobacter fetus MMM01 [JRKX]
44277
44203
-
Glu
CTC
[ENA]
¡û
>W11161405
AFGH01000017
Campylobacterota
Campylobacter fetus subsp. venerealis NCTC 10354 [AFGH]
316
390
+
Glu
CTC
[ENA]
¡û
>C161029999
CP010953
Campylobacterota
Campylobacter fetus subsp. testudinum Sp3 SP3 [CP010953]
627185
627259
+
Glu
CTC
-
¡û
>C161089490
CP015577
Campylobacterota
Campylobacter iguaniorum RM11343 [CP015577]
612479
612553
+
Glu
CTC
-
¡û
>W1610164343
FAUX01000004
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUX]
7631
7557
-
Glu
CTC
[ENA]
¡û
>W1610164577
FAVE01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVE]
645581
645655
+
Glu
CTC
[ENA]
¡û
>W1610550869
JYCP01000020
Campylobacterota
Campylobacter fetus subsp. fetus [JYCP]
882
956
+
Glu
CTC
[ENA]
¡û
>W1610596895
LELD01000014
Campylobacterota
Campylobacter fetus subsp. testudinum [LELD]
913
987
+
Glu
CTC
[ENA]
¡û
>W1610599394
LFLJ01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLJ]
44280
44206
-
Glu
CTC
[ENA]
¡û
>W1610599434
LFLK01000008
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLK]
78774
78700
-
Glu
CTC
[ENA]
¡û
>W1610599457
LFLL01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLL]
67118
67044
-
Glu
CTC
[ENA]
¡û
>W1610599498
LFLM01000018
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLM]
127
201
+
Glu
CTC
[ENA]
¡û
>W1610599543
LFLN01000012
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLN]
44219
44145
-
Glu
CTC
[ENA]
¡û
>W1610599587
LFLO01000018
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLO]
30144
30070
-
Glu
CTC
[ENA]
¡û
>W1610599624
LFLP01000021
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLP]
17273
17199
-
Glu
CTC
[ENA]
¡û
>W1610599640
LFLQ01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
44205
44131
-
Glu
CTC
[ENA]
¡û
>W1610599811
LFMJ01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFMJ]
44507
44433
-
Glu
CTC
[ENA]
¡û
>W1610609217
LFXC01000016
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXC]
411
485
+
Glu
CTC
[ENA]
¡û
>W1610609255
LFXD01000009
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXD]
914
988
+
Glu
CTC
[ENA]
¡û
>W1610609280
LFXE01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXE]
44453
44379
-
Glu
CTC
[ENA]
¡û
>W1610609332
LFXF01000011
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
44089
44015
-
Glu
CTC
[ENA]
¡û
>W1610609370
LFXG01000012
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXG]
44087
44013
-
Glu
CTC
[ENA]
¡û
>W1610720626
LMBE01000015
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBE]
912
986
+
Glu
CTC
[ENA]
¡û
>W1610720656
LMBF01000023
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBF]
129
203
+
Glu
CTC
[ENA]
¡û
>W1610720671
LMBG01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBG]
44032
43958
-
Glu
CTC
[ENA]
¡û
>W1610720730
LMBH01000132
Campylobacterota
Campylobacter fetus subsp. fetus [LMBH]
1995
1921
-
Glu
CTC
[ENA]
¡û
>W1610720768
LMBI01000021
Campylobacterota
Campylobacter fetus subsp. venerealis [LMBI]
306
380
+
Glu
CTC
[ENA]
¡û
>W1610871682
LRAL01000002
Campylobacterota
Campylobacter fetus subsp. fetus BT 10/98 [LRAL]
305152
305078
-
Glu
CTC
[ENA]
¡û
>W1610871746
LRAM01000013
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/596 [LRAM]
486
560
+
Glu
CTC
[ENA]
¡û
>W1610877190
LRER01000020
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi97/532 [LRER]
309
383
+
Glu
CTC
[ENA]
¡û
>W1610877225
LRES01000013
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
44945
44871
-
Glu
CTC
[ENA]
¡û
>W1610877259
LRET01000014
Campylobacterota
Campylobacter fetus subsp. venerealis cfvB10 [LRET]
927
1001
+
Glu
CTC
[ENA]
¡û
>W1610877295
LREU01000012
Campylobacterota
Campylobacter fetus subsp. venerealis CCUG 33872 [LREU]
407
481
+
Glu
CTC
[ENA]
¡û
>W1610877324
LREV01000006
Campylobacterota
Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900 [LREV]
309
383
+
Glu
CTC
[ENA]
¡û
>W1610877376
LREW01000013
Campylobacterota
Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900 [LREW]
494
568
+
Glu
CTC
[ENA]
¡û
>W1610877396
LREX01000002
Campylobacterota
Campylobacter fetus subsp. venerealis [LREX]
148045
147971
-
Glu
CTC
[ENA]
¡û
>W1610877446
LREY01000012
Campylobacterota
Campylobacter fetus subsp. venerealis [LREY]
45060
44986
-
Glu
CTC
[ENA]
¡û
>W1610877474
LREZ01000005
Campylobacterota
Campylobacter fetus subsp. venerealis [LREZ]
310
384
+
Glu
CTC
[ENA]
¡û
>W1610877515
LRFA01000011
Campylobacterota
Campylobacter fetus subsp. venerealis [LRFA]
44961
44887
-
Glu
CTC
[ENA]
¡û
>W1610897107
LRVK01000076
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi02/298 [LRVK]
486
560
+
Glu
CTC
[ENA]
¡û
>W1610897126
LRVL01000003
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi92/203 [LRVL]
136573
136499
-
Glu
CTC
[ENA]
¡û
>W1710166010
FAUX01000004
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUX]
7631
7557
-
Glu
CTC
[ENA]
¡û
>W1710166244
FAVE01000001
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVE]
645581
645655
+
Glu
CTC
[ENA]
¡û
>W1710660746
JYCP01000020
Campylobacterota
Campylobacter fetus subsp. fetus [JYCP]
882
956
+
Glu
CTC
[ENA]
¡û
>W1710717900
LELD01000014
Campylobacterota
Campylobacter fetus subsp. testudinum [LELD]
913
987
+
Glu
CTC
[ENA]
¡û
>W1710720799
LFLJ01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLJ]
44280
44206
-
Glu
CTC
[ENA]
¡û
>W1710720839
LFLK01000008
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLK]
78774
78700
-
Glu
CTC
[ENA]
¡û
>W1710720862
LFLL01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLL]
67118
67044
-
Glu
CTC
[ENA]
¡û
>W1710720903
LFLM01000018
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLM]
127
201
+
Glu
CTC
[ENA]
¡û
>W1710720948
LFLN01000012
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLN]
44219
44145
-
Glu
CTC
[ENA]
¡û
>W1710720992
LFLO01000018
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLO]
30144
30070
-
Glu
CTC
[ENA]
¡û
>W1710721029
LFLP01000021
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLP]
17273
17199
-
Glu
CTC
[ENA]
¡û
>W1710721045
LFLQ01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
44205
44131
-
Glu
CTC
[ENA]
¡û
>W1710721254
LFMJ01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFMJ]
44507
44433
-
Glu
CTC
[ENA]
¡û
>W1710730504
LFXC01000016
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXC]
411
485
+
Glu
CTC
[ENA]
¡û
>W1710730542
LFXD01000009
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXD]
914
988
+
Glu
CTC
[ENA]
¡û
>W1710730567
LFXE01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXE]
44453
44379
-
Glu
CTC
[ENA]
¡û
>W1710730619
LFXF01000011
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
44089
44015
-
Glu
CTC
[ENA]
¡û
>W1710730657
LFXG01000012
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXG]
44087
44013
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK