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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339525 (105 seq.)
>W1710869893
LMKB01000005
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
285120
285048
-
Val
GAC
[ENA]
¡û
>W1710871353
LMLG01000001
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
1063895
1063967
+
Val
GAC
[ENA]
¡û
>W1710872731
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
1068434
1068506
+
Val
GAC
[ENA]
¡û
>W1710873149
LMMO01000003
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
720627
720699
+
Val
GAC
[ENA]
¡û
>W1710874705
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
381030
380956
-
Val
GAC
[ENA]
¡û
>W1710876063
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1303248
1303176
-
Val
GAC
[ENA]
¡û
>W1710876260
LMPB01000002
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
414531
414459
-
Val
GAC
[ENA]
¡û
>W1710876897
LMPQ01000001
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
287552
287480
-
Val
GAC
[ENA]
¡û
>W1710878112
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
1068250
1068322
+
Val
GAC
[ENA]
¡û
>W1711018555
LQXA01000023
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
37131
37205
+
Val
GAC
[ENA]
¡û
>W1711079606
LSOE01000006
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
318479
318405
-
Val
GAC
[ENA]
¡û
>W1711357180
MDHB01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
293046
293120
+
Val
GAC
[ENA]
¡û
>W1711357237
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
2034164
2034090
-
Val
GAC
[ENA]
¡û
>W1711357290
MDHD01000417
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
5804
5730
-
Val
GAC
[ENA]
¡û
>W1711357323
MDHE01000355
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
5802
5728
-
Val
GAC
[ENA]
¡û
>W1711357365
MDHF01000206
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
5787
5713
-
Val
GAC
[ENA]
¡û
>W1711357421
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
420453
420379
-
Val
GAC
[ENA]
¡û
>W1711357445
MDHH01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
293046
293120
+
Val
GAC
[ENA]
¡û
>W1711357494
MDHI01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
1612123
1612049
-
Val
GAC
[ENA]
¡û
>W1711357552
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
2068237
2068163
-
Val
GAC
[ENA]
¡û
>W1711357576
MDHK01000023
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
224668
224594
-
Val
GAC
[ENA]
¡û
>W1711357642
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
2094620
2094546
-
Val
GAC
[ENA]
¡û
>W1711357686
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
2044405
2044331
-
Val
GAC
[ENA]
¡û
>W1711360718
MDJW01000012
Actinomycetota
Clavibacter michiganensis [MDJW]
38210
38284
+
Val
GAC
[ENA]
¡û
>W1711360748
MDJX01000141
Actinomycetota
Clavibacter michiganensis [MDJX]
5536
5610
+
Val
GAC
[ENA]
¡û
>W1711360808
MDJY01000058
Actinomycetota
Clavibacter michiganensis [MDJY]
31052
30978
-
Val
GAC
[ENA]
¡û
>W1711360822
MDJZ01000002
Actinomycetota
Clavibacter michiganensis [MDJZ]
22584
22510
-
Val
GAC
[ENA]
¡û
>W131208650
ATIA01000111
Actinomycetota
Leifsonia rubra CMS 76R [ATIA]
57378
57306
-
Val
GAC
[ENA]
¡û
>W1711461342
MJGS01000001
Actinomycetota
Frigoribacterium sp. MCBA15_019 [MJGS]
248588
248516
-
Val
GAC
[ENA]
¡û
>C006168
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
2060165
2060091
-
Val
GAC
[Ensembl]
¡û
>w013989
AAOB01000016
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
11692
11616
-
Val
GAC
[ENA]
¡û
>WENV180016045
FSTY01000310
[FSTY] metagenome; soil
124
196
+
Val
GAC
[ENA]
¢þ
>WENV180016976
FSWJ01000120
[FSWJ] metagenome; soil
31243
31171
-
Val
GAC
[ENA]
¢þ
>WENV180017297
FSWR01000068
[FSWR] metagenome; soil
116505
116577
+
Val
GAC
[ENA]
¢þ
>WENV180023973
FTIF01005321
[FTIF] metagenome; soil
8424
8352
-
Val
GAC
[ENA]
¢þ
>W141212791
AZQZ01000045
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
180092
180166
+
Val
GAC
[ENA]
¡û
>C08003543
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
756314
756388
+
Val
GAC
[Ensembl]
¡û
>WENV170600722
FUWD010139888
[FUWD] metagenome; unknown
365
437
+
Val
GAC
[ENA]
¢þ
>WENV170600813
FUWD010143792
[FUWD] metagenome; unknown
395
323
-
Val
GAC
[ENA]
¢þ
>WENV170606237
FUWD010635218
[FUWD] metagenome; unknown
300
228
-
Val
GAC
[ENA]
¢þ
>WENV170626317
FUWD013219083
[FUWD] metagenome; unknown
1365
1293
-
Val
GAC
[ENA]
¢þ
>WENV170700622
LIDZ01015782
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
1522
1594
+
Val
GAC
[ENA]
¢þ
>C181002038
AP017457
Actinomycetota
Aurantimicrobium minutum KNC [AP017457]
524427
524499
+
Val
GAC
-
¡û
>C181048882
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
1365194
1365268
+
Val
GAC
-
¡û
>C181048949
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
1825969
1825895
-
Val
GAC
-
¡û
>C181092809
CP023994
Actinomycetota
Aurantimicrobium photophilum MWH-Mo1 [CP023994]
758378
758450
+
Val
GAC
-
¡û
>C181143956
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1591702
1591630
-
Val
GAC
-
¡û
>C181194480
CP030929
Actinomycetota
Aurantimicrobium sp. MWH-Uga1 [CP030929]
877816
877744
-
Val
GAC
-
¡û
>C191011709
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
1596319
1596391
+
Val
GAC
-
¡û
>C191139355
CP035375
Actinomycetota
Salinibacterium sp. UTAS2018 [CP035375]
655652
655580
-
Val
GAC
-
¡û
>W141766589
JOEB01000003
Actinomycetota
Mycetocola saprophilus [JOEB]
529311
529237
-
Val
GAC
[ENA]
¡û
>W141766592
JOEB01000003
Actinomycetota
Mycetocola saprophilus [JOEB]
528676
528602
-
Val
GAC
[ENA]
¡û
>W141766609
JOEC01000001
Actinomycetota
Mycetocola saprophilus [JOEC]
712943
713017
+
Val
GAC
[ENA]
¡û
>W141766612
JOEC01000001
Actinomycetota
Mycetocola saprophilus [JOEC]
713578
713652
+
Val
GAC
[ENA]
¡û
>W1910839678
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
2953289
2953363
+
Val
GAC
[ENA]
¡û
>W1910839714
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
2631154
2631228
+
Val
GAC
[ENA]
¡û
>W1910839748
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
1606766
1606840
+
Val
GAC
[ENA]
¡û
>W1910839796
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
2303961
2304035
+
Val
GAC
[ENA]
¡û
>W1910839841
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
2381808
2381882
+
Val
GAC
[ENA]
¡û
>W1911497902
OCST01000006
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
4064
4136
+
Val
GAC
[ENA]
¡û
>W1911748130
QWDZ01000002
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
5797
5723
-
Val
GAC
[ENA]
¡û
>W1911748191
QWEA01000224
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
722
796
+
Val
GAC
[ENA]
¡û
>W1911748232
QWEB01000050
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
5454
5528
+
Val
GAC
[ENA]
¡û
>W1911748286
QWEC01000072
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
5871
5797
-
Val
GAC
[ENA]
¡û
>W1911748312
QWED01000021
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
5474
5548
+
Val
GAC
[ENA]
¡û
>W1911748369
QWEE01000063
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
5812
5738
-
Val
GAC
[ENA]
¡û
>W1911749576
QWGS01000036
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
5424
5498
+
Val
GAC
[ENA]
¡û
>W1911749630
QWGT01000077
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
5851
5777
-
Val
GAC
[ENA]
¡û
>W1911749670
QWGU01000090
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
2341
2267
-
Val
GAC
[ENA]
¡û
>W1911749706
QWGV01000037
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
5485
5559
+
Val
GAC
[ENA]
¡û
>W1810090202
PGFH01000001
Actinomycetota
Salinibacterium amurskyense DSM 16400 [PGFH]
1554404
1554476
+
Val
GAC
[ENA]
¡û
>SRA1003311
SRR002326.383702
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
43
117
+
Val
GAC
[SRA]
>SRA1003469
SRR002326.487866
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
211
139
-
Val
GAC
[SRA]
>W1810277225
PSTR01000001
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
275292
275218
-
Val
GAC
[ENA]
¡û
>W1810277285
PSTS01000008
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
71006
70932
-
Val
GAC
[ENA]
¡û
>W1810277424
PSTV01000018
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
30902
30828
-
Val
GAC
[ENA]
¡û
>W1810277474
PSTW01000021
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
273423
273349
-
Val
GAC
[ENA]
¡û
>W1810282075
PSXY01000006
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
71107
71033
-
Val
GAC
[ENA]
¡û
>W1810364692
PVTL01000001
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
491946
492018
+
Val
GAC
[ENA]
¡û
>W1810476309
QANL01000004
Actinomycetota
Planctomonas deserti 13S1-3 [QANL]
276351
276279
-
Val
GAC
[ENA]
¡û
>W1810569041
QEFB01000001
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
277933
277861
-
Val
GAC
[ENA]
¡û
>W1810860797
QTTK01000002
Actinomycetota
Clavibacter sp. 199 [QTTK]
835520
835446
-
Val
GAC
[ENA]
¡û
>C151075665
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
1752675
1752601
-
Val
GAC
[Ensembl]
¡û
>C151095724
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
1883517
1883443
-
Val
GAC
-
¡û
>W1511352440
JROD01000005
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
130786
130712
-
Val
GAC
[ENA]
¡û
>W1511509359
JXQZ01000001
Actinomycetota
Frigoribacterium sp. MEB024 [JXQZ]
147824
147896
+
Val
GAC
[ENA]
¡û
>W1511570099
LAKL01000017
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
82940
82866
-
Val
GAC
[ENA]
¡û
>C161073128
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
2752924
2752998
+
Val
GAC
[Ensembl]
¡û
>W121043542
AHWA01000002
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
392587
392515
-
Val
GAC
[ENA]
¡û
>C131019555
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
1890283
1890209
-
Val
GAC
[Ensembl]
¡û
>W1610620610
LHOZ01000065
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
59240
59312
+
Val
GAC
[ENA]
¡û
>W1610732239
LMKB01000005
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
285120
285048
-
Val
GAC
[ENA]
¡û
>W1610733699
LMLG01000001
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
1063895
1063967
+
Val
GAC
[ENA]
¡û
>W1610735077
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
1068434
1068506
+
Val
GAC
[ENA]
¡û
>W1610735495
LMMO01000003
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
720627
720699
+
Val
GAC
[ENA]
¡û
>W1610737051
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
381030
380956
-
Val
GAC
[ENA]
¡û
>W1610738409
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1303248
1303176
-
Val
GAC
[ENA]
¡û
>W1610738606
LMPB01000002
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
414531
414459
-
Val
GAC
[ENA]
¡û
>W1610739243
LMPQ01000001
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
287552
287480
-
Val
GAC
[ENA]
¡û
>W1610740458
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
1068250
1068322
+
Val
GAC
[ENA]
¡û
>W1610867031
LQXA01000023
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
37131
37205
+
Val
GAC
[ENA]
¡û
>W1610918516
LSOE01000006
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
318479
318405
-
Val
GAC
[ENA]
¡û
>W1710570930
FOVM01000007
Actinomycetota
Mycetocola miduiensis [FOVM]
20950
20878
-
Val
GAC
[ENA]
¡û
>W1710604658
FVZG01000001
Actinomycetota
Clavibacter michiganensis [FVZG]
1835079
1835005
-
Val
GAC
[ENA]
¡û
>W1710748304
LHOZ01000065
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
59240
59312
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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