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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339537 (134 seq.)
>W1710869286
LMJR01000001
Bacillota
Bacillus sp. Root147 [LMJR]
2288930
2289001
+
Ala
GGC
[ENA]
¡û
>W1710869430
LMJS01000023
Bacillota
Bacillus sp. Root239 [LMJS]
75443
75514
+
Ala
GGC
[ENA]
¡û
>W1710879086
LMRL01000013
Bacillota
Bacillus sp. Leaf75 [LMRL]
39037
39108
+
Ala
GGC
[ENA]
¡û
>W1710881239
LMSY01000001
Bacillota
Bacillus sp. Soil531 [LMSY]
496709
496638
-
Ala
GGC
[ENA]
¡û
>W1710925822
LODM01000012
Bacillota
Priestia megaterium [LODM]
1487436
1487365
-
Ala
GGC
[ENA]
¡û
>W1711009309
LQQQ01000012
Bacillota
Priestia aryabhattai [LQQQ]
624196
624267
+
Ala
GGC
[ENA]
¡û
>W1711047867
LRPG01000082
Bacillota
Priestia megaterium [LRPG]
176255
176326
+
Ala
GGC
[ENA]
¡û
>W1711116752
LUCO01000004
Bacillota
Priestia megaterium [LUCO]
193943
194014
+
Ala
GGC
[ENA]
¡û
>W1711339634
MCAN01000003
Bacillota
Priestia aryabhattai [MCAN]
2291785
2291856
+
Ala
GGC
[ENA]
¡û
>W1711678393
MRUF01000002
Bacillota
Priestia megaterium [MRUF]
87737
87808
+
Ala
GGC
[ENA]
¡û
>W1711720359
MTIS01000004
Bacillota
Litchfieldia alkalitelluris [MTIS]
711745
711672
-
Ala
GGC
[ENA]
¡û
>W1711774837
MVJH01000229
Bacillota
Priestia aryabhattai [MVJH]
639
568
-
Ala
GGC
[ENA]
¡û
>W1712096639
NHZZ01000003
Bacillota
Priestia aryabhattai [NHZZ]
100083
100012
-
Ala
GGC
[ENA]
¡û
>C171085935
CP018874
Bacillota
Priestia megaterium JX285 [CP018874]
2417276
2417205
-
Ala
GGC
-
¡û
>WENV180041759
LLBZ010416251
[LLBZ] soil metagenome; soil from tomato rhizosphere
260
189
-
Ala
GGC
[ENA]
¢þ
>W141011678
AHTF01000058
Bacillota
Priestia megaterium NCT-2 [AHTF]
14544
14473
-
Ala
GGC
[ENA]
¡û
>W141053372
ANNS01000138
Bacillota
Bacillus sp. Aph1 [ANNS]
2306
2235
-
Ala
GGC
[ENA]
¡û
>W141171356
AXZS01000012
Bacillota
Bacillus sp. RP1137 [AXZS]
577713
577642
-
Ala
GGC
[ENA]
¡û
>W141215726
AZUJ01000008
Bacillota
Priestia megaterium 27Col1.1E [AZUJ]
367235
367306
+
Ala
GGC
[ENA]
¡û
>W141217054
AZVI01000001
Bacillota
Bacillus sp. 278922_107 [AZVI]
692281
692352
+
Ala
GGC
[ENA]
¡û
>W141217204
AZVK01000004
Bacillota
Bacillus sp. 171095_106 [AZVK]
366741
366812
+
Ala
GGC
[ENA]
¡û
>C181070916
CP022674
Bacillota
Priestia megaterium SR7 [CP022674]
2039287
2039216
-
Ala
GGC
-
¡û
>C181093393
CP024035
Bacillota
Priestia aryabhattai K13 [CP024035]
2383331
2383260
-
Ala
GGC
-
¡û
>C181105387
CP024794
Bacillota
Bacillus sp. Y-01 [CP024794]
2451182
2451111
-
Ala
GGC
-
¡û
>C181138908
CP026736
Bacillota
Priestia megaterium YC4-R4 [CP026736]
4012684
4012613
-
Ala
GGC
-
¡û
>C191091368
CP032527
Bacillota
Priestia megaterium NCT-2 [CP032527]
2986910
2986981
+
Ala
GGC
-
¡û
>C191134581
CP035094
Bacillota
Priestia megaterium NBRC 15308 = ATCC 14581 [CP035094]
2502604
2502533
-
Ala
GGC
-
¡û
>C191186358
CP041066
Bacillota
Priestia megaterium KNU-01 [CP041066]
2940092
2940021
-
Ala
GGC
-
¡û
>W141711754
JMQB01000025
Bacillota
Priestia megaterium [JMQB]
418668
418739
+
Ala
GGC
[ENA]
¡û
>W1910749984
MJGZ01000003
Bacillota
Bacillus sp. CMAA 1363 [MJGZ]
349607
349678
+
Ala
GGC
[ENA]
¡û
>W1911069598
NMOL01000004
Bacillota
Priestia megaterium PT6 [NMOL]
622237
622166
-
Ala
GGC
[ENA]
¡û
>W1911177904
NQLQ01000033
Bacillota
Priestia megaterium Jan-03 [NQLQ]
126240
126169
-
Ala
GGC
[ENA]
¡û
>W1911294139
NTRQ01000002
Bacillota
Priestia megaterium AFS022837 [NTRQ]
600163
600092
-
Ala
GGC
[ENA]
¡û
>W1911294538
NTRV01000094
Bacillota
Priestia megaterium AFS022468 [NTRV]
692193
692264
+
Ala
GGC
[ENA]
¡û
>W1911297508
NTTN01000001
Bacillota
Priestia megaterium AFS018399 [NTTN]
352106
352177
+
Ala
GGC
[ENA]
¡û
>W1911297967
NTTT01000032
Bacillota
Priestia megaterium AFS018038 [NTTT]
247648
247719
+
Ala
GGC
[ENA]
¡û
>W1911299896
NTUU01000017
Bacillota
Priestia megaterium AFS015270 [NTUU]
68103
68174
+
Ala
GGC
[ENA]
¡û
>W1911300655
NTVG01000001
Bacillota
Priestia megaterium AFS013729 [NTVG]
584376
584305
-
Ala
GGC
[ENA]
¡û
>W1911300942
NTVK01000009
Bacillota
Priestia megaterium AFS013177 [NTVK]
372974
373045
+
Ala
GGC
[ENA]
¡û
>W1911302595
NTWH01000001
Bacillota
Priestia megaterium AFS009982 [NTWH]
2298482
2298553
+
Ala
GGC
[ENA]
¡û
>W1911303740
NTWY01000004
Bacillota
Priestia megaterium AFS008968 [NTWY]
189430
189359
-
Ala
GGC
[ENA]
¡û
>W1911306467
NTYL01000009
Bacillota
Priestia megaterium AFS004604 [NTYL]
511786
511715
-
Ala
GGC
[ENA]
¡û
>W1911307275
NTYW01000006
Bacillota
Priestia megaterium AFS003013 [NTYW]
189351
189280
-
Ala
GGC
[ENA]
¡û
>W1911308035
NTZG01000009
Bacillota
Priestia megaterium AFS002252 [NTZG]
539383
539312
-
Ala
GGC
[ENA]
¡û
>W1911308934
NTZT01000002
Bacillota
Priestia megaterium AFS000775 [NTZT]
594670
594599
-
Ala
GGC
[ENA]
¡û
>W1911316753
NUEC01000008
Bacillota
Priestia aryabhattai AFS007213 [NUEC]
473488
473417
-
Ala
GGC
[ENA]
¡û
>W1911319083
NUFL01000013
Bacillota
Priestia megaterium AFS058060 [NUFL]
406239
406168
-
Ala
GGC
[ENA]
¡û
>W1911319741
NUFU01000038
Bacillota
Priestia megaterium AFS057444 [NUFU]
29151
29080
-
Ala
GGC
[ENA]
¡û
>W1911320033
NUFZ01000004
Bacillota
Priestia megaterium AFS056967 [NUFZ]
629472
629401
-
Ala
GGC
[ENA]
¡û
>W1911323098
NUHQ01000012
Bacillota
Priestia megaterium AFS052959 [NUHQ]
245328
245399
+
Ala
GGC
[ENA]
¡û
>W1911323811
NUIA01000012
Bacillota
Priestia megaterium AFS051715 [NUIA]
189404
189333
-
Ala
GGC
[ENA]
¡û
>W1911324651
NUIN01000005
Bacillota
Priestia megaterium AFS049546 [NUIN]
236247
236318
+
Ala
GGC
[ENA]
¡û
>W1911324923
NUIR01000029
Bacillota
Priestia megaterium AFS049113 [NUIR]
450156
450227
+
Ala
GGC
[ENA]
¡û
>W1911327596
NUKD01000100
Bacillota
Priestia megaterium AFS044615 [NUKD]
2355541
2355612
+
Ala
GGC
[ENA]
¡û
>W1911327842
NUKH01000039
Bacillota
Priestia megaterium AFS044352 [NUKH]
12907
12836
-
Ala
GGC
[ENA]
¡û
>W1911327939
NUKI01000066
Bacillota
Priestia megaterium AFS044260 [NUKI]
1007578
1007649
+
Ala
GGC
[ENA]
¡û
>W1911328032
NUKK01000004
Bacillota
Priestia megaterium AFS043966 [NUKK]
272859
272930
+
Ala
GGC
[ENA]
¡û
>W1911328762
NUKU01000004
Bacillota
Priestia megaterium AFS043082 [NUKU]
587147
587076
-
Ala
GGC
[ENA]
¡û
>W1911329049
NUKX01000066
Bacillota
Priestia megaterium AFS042932 [NUKX]
603033
602962
-
Ala
GGC
[ENA]
¡û
>W1911330787
NULX01000008
Bacillota
Priestia megaterium AFS040655 [NULX]
31695
31624
-
Ala
GGC
[ENA]
¡û
>W1911331144
NUMB01000068
Bacillota
Priestia megaterium AFS040356 [NUMB]
2282315
2282386
+
Ala
GGC
[ENA]
¡û
>W1911335355
NUOI01000013
Bacillota
Priestia megaterium AFS033178 [NUOI]
210582
210511
-
Ala
GGC
[ENA]
¡û
>W1911335676
NUON01000025
Bacillota
Priestia megaterium AFS032489 [NUON]
612151
612080
-
Ala
GGC
[ENA]
¡û
>W1911335864
NUOQ01000013
Bacillota
Priestia megaterium AFS032248 [NUOQ]
31719
31648
-
Ala
GGC
[ENA]
¡û
>W1911337036
NUPF01000039
Bacillota
Priestia megaterium AFS030940 [NUPF]
622890
622819
-
Ala
GGC
[ENA]
¡û
>W1911338435
NUQA01000004
Bacillota
Priestia megaterium AFS029632 [NUQA]
245404
245475
+
Ala
GGC
[ENA]
¡û
>W1911345436
NUTZ01000004
Bacillota
Priestia aryabhattai AFS033892 [NUTZ]
182939
182868
-
Ala
GGC
[ENA]
¡û
>W1911348041
NUVK01000008
Bacillota
Priestia megaterium AFS086585 [NUVK]
245256
245327
+
Ala
GGC
[ENA]
¡û
>W1911348349
NUVO01000062
Bacillota
Priestia megaterium AFS086251 [NUVO]
31287
31216
-
Ala
GGC
[ENA]
¡û
>W1911349066
NUVY01000005
Bacillota
Priestia megaterium AFS085357 [NUVY]
445183
445254
+
Ala
GGC
[ENA]
¡û
>W1911349743
NUWI01000003
Bacillota
Priestia megaterium AFS083949 [NUWI]
651307
651236
-
Ala
GGC
[ENA]
¡û
>W1911350317
NUWQ01000013
Bacillota
Priestia megaterium AFS082812 [NUWQ]
524027
524098
+
Ala
GGC
[ENA]
¡û
>W1911350594
NUWU01000011
Bacillota
Priestia megaterium AFS082415 [NUWU]
562578
562507
-
Ala
GGC
[ENA]
¡û
>W1911350902
NUWY01000001
Bacillota
Priestia megaterium AFS081975 [NUWY]
517815
517744
-
Ala
GGC
[ENA]
¡û
>W1911350993
NUWZ01000005
Bacillota
Priestia megaterium AFS081669 [NUWZ]
381760
381831
+
Ala
GGC
[ENA]
¡û
>W1911351808
NUXL01000005
Bacillota
Priestia megaterium AFS080677 [NUXL]
701457
701528
+
Ala
GGC
[ENA]
¡û
>W1911354920
NUZC01000076
Bacillota
Priestia megaterium AFS075626 [NUZC]
504865
504936
+
Ala
GGC
[ENA]
¡û
>W1911356017
NUZS01000030
Bacillota
Priestia megaterium AFS073479 [NUZS]
441010
441081
+
Ala
GGC
[ENA]
¡û
>W1911356080
NUZT01000004
Bacillota
Priestia megaterium AFS073377 [NUZT]
31669
31598
-
Ala
GGC
[ENA]
¡û
>W1911356381
NUZX01000012
Bacillota
Priestia megaterium AFS072872 [NUZX]
246803
246874
+
Ala
GGC
[ENA]
¡û
>W1911356538
NUZZ01000017
Bacillota
Priestia megaterium AFS072301 [NUZZ]
155587
155658
+
Ala
GGC
[ENA]
¡û
>W1911358212
NVAW01000001
Bacillota
Priestia megaterium AFS069568 [NVAW]
371034
371105
+
Ala
GGC
[ENA]
¡û
>W1911359615
NVBQ01000016
Bacillota
Priestia megaterium AFS067084 [NVBQ]
336411
336340
-
Ala
GGC
[ENA]
¡û
>W1911361510
NVCR01000002
Bacillota
Priestia megaterium AFS064796 [NVCR]
187974
187903
-
Ala
GGC
[ENA]
¡û
>W1911362826
NVDJ01000068
Bacillota
Priestia megaterium AFS061494 [NVDJ]
559758
559687
-
Ala
GGC
[ENA]
¡û
>W1911364394
NVEG01000004
Bacillota
Priestia megaterium AFS059495 [NVEG]
703395
703466
+
Ala
GGC
[ENA]
¡û
>W1911365014
NVEP01000003
Bacillota
Priestia megaterium AFS058476 [NVEP]
188916
188987
+
Ala
GGC
[ENA]
¡û
>W1911365525
NVEV01000084
Bacillota
Priestia aryabhattai AFS088312 [NVEV]
124007
123936
-
Ala
GGC
[ENA]
¡û
>W1911368963
NVGV01000006
Bacillota
Priestia aryabhattai AFS075785 [NVGV]
180000
179929
-
Ala
GGC
[ENA]
¡û
>W1911374822
NVKD01000016
Bacillota
Priestia megaterium AFS099780 [NVKD]
184273
184202
-
Ala
GGC
[ENA]
¡û
>W1911375519
NVKN01000011
Bacillota
Priestia megaterium AFS099045 [NVKN]
1021867
1021938
+
Ala
GGC
[ENA]
¡û
>W1911376006
NVKU01000010
Bacillota
Priestia megaterium AFS098044 [NVKU]
1062912
1062983
+
Ala
GGC
[ENA]
¡û
>W1911377330
NVLN01000003
Bacillota
Priestia megaterium AFS096440 [NVLN]
317771
317842
+
Ala
GGC
[ENA]
¡û
>W1911379849
NVMV01000008
Bacillota
Priestia megaterium AFS093026 [NVMV]
362036
362107
+
Ala
GGC
[ENA]
¡û
>W1911380572
NVNE01000012
Bacillota
Priestia megaterium AFS090509 [NVNE]
184307
184236
-
Ala
GGC
[ENA]
¡û
>W1911596918
PNHN01000003
Bacillota
Priestia megaterium UMB0500 [PNHN]
400324
400395
+
Ala
GGC
[ENA]
¡û
>W1810223656
POTF01000002
Bacillota
Priestia megaterium KU143 [POTF]
161841
161770
-
Ala
GGC
[ENA]
¡û
>W1810267533
PQWM01000006
Bacillota
Priestia megaterium CHCC20162 [PQWM]
691020
691091
+
Ala
GGC
[ENA]
¡û
>W1810271290
PRKV01000015
Bacillota
Priestia megaterium TG1-E1 [PRKV]
37364
37435
+
Ala
GGC
[ENA]
¡û
>W1810537846
QDFM01000003
Bacillota
Priestia megaterium TPD7018 [QDFM]
362693
362764
+
Ala
GGC
[ENA]
¡û
>W1810538000
QDFO01000007
Bacillota
Priestia megaterium TPD7007 [QDFO]
167249
167320
+
Ala
GGC
[ENA]
¡û
>W1810538086
QDFP01000005
Bacillota
Priestia megaterium TPD7008 [QDFP]
362648
362719
+
Ala
GGC
[ENA]
¡û
>W1810538407
QDFU01000023
Bacillota
Priestia megaterium TPD7011 [QDFU]
66678
66749
+
Ala
GGC
[ENA]
¡û
>W1810657079
QJGY01000142
Bacillota
Priestia megaterium LVN01 [QJGY]
4225
4296
+
Ala
GGC
[ENA]
¡û
>W1810760082
QPJX01000003
Bacillota
Bacillus sp. AG236 [QPJX]
382722
382793
+
Ala
GGC
[ENA]
¡û
>W1810887584
QUQP01000001
Bacillota
Bacillus sp. ALD [QUQP]
721212
721283
+
Ala
GGC
[ENA]
¡û
>W1810887885
QUQS01000001
Bacillota
Bacillus sp. RC [QUQS]
1877880
1877809
-
Ala
GGC
[ENA]
¡û
>C151061966
CP009920
Bacillota
Priestia megaterium NBRC 15308 = ATCC 14581 [CP009920]
4623182
4623111
-
Ala
GGC
[Ensembl]
¡û
>C151071859
CP010586
Bacillota
Priestia megaterium Q3 [CP010586]
2428117
2428046
-
Ala
GGC
[Ensembl]
¡û
>C10101814
CP001982
Bacillota
Priestia megaterium DSM 319 [CP001982]
2394791
2394720
-
Ala
GGC
[Ensembl]
¡û
>C10101931
CP001983
Bacillota
Priestia megaterium QM B1551 [CP001983]
2423757
2423686
-
Ala
GGC
[Ensembl]
¡û
>C11103604
CP003017
Bacillota
Priestia megaterium WSH-002 [CP003017]
2638774
2638845
+
Ala
GGC
[Ensembl]
¡û
>W1511107858
JJMH01000072
Bacillota
Priestia megaterium NBRC 15308 = ATCC 14581 [JJMH]
542611
542540
-
Ala
GGC
[ENA]
¡û
>W1511206019
JMTL01000001
Bacillota
Priestia aryabhattai T61 [JMTL]
2280676
2280747
+
Ala
GGC
[ENA]
¡û
>W1511301856
JPIE01000001
Bacillota
Priestia aryabhattai GZ03 [JPIE]
1773011
1772940
-
Ala
GGC
[ENA]
¡û
>W1511509584
JXRC01000045
Bacillota
Priestia megaterium C765 [JXRC]
712688
712617
-
Ala
GGC
[ENA]
¡û
>W1511535391
JYOO01000057
Bacillota
Priestia aryabhattai B8W22 [JYOO]
10868
10797
-
Ala
GGC
[ENA]
¡û
>W1511639674
LDPJ01000026
Bacillota
Priestia megaterium RIT381 [LDPJ]
42385
42456
+
Ala
GGC
[ENA]
¡û
>W1511641573
LDUV01000011
Bacillota
Priestia aryabhattai LK20 [LDUV]
91907
91978
+
Ala
GGC
[ENA]
¡û
>W1511643357
LDWN01000016
Bacillota
Priestia aryabhattai LK25 [LDWN]
91907
91978
+
Ala
GGC
[ENA]
¡û
>W1511685783
LFQJ01000009
Bacillota
Priestia megaterium Riq5 [LFQJ]
294006
293935
-
Ala
GGC
[ENA]
¡û
>C161084954
CP015226
Bacillota
Priestia megaterium IHB B 7164 [CP015226]
2354909
2354838
-
Ala
GGC
-
¡û
>W1610072500
BCVB01000004
Bacillota
Priestia megaterium NBRC 15308 = ATCC 14581 [BCVB]
30289
30360
+
Ala
GGC
[ENA]
¡û
>W1610731632
LMJR01000001
Bacillota
Bacillus sp. Root147 [LMJR]
2288930
2289001
+
Ala
GGC
[ENA]
¡û
>W1610731776
LMJS01000023
Bacillota
Bacillus sp. Root239 [LMJS]
75443
75514
+
Ala
GGC
[ENA]
¡û
>W1610741432
LMRL01000013
Bacillota
Bacillus sp. Leaf75 [LMRL]
39037
39108
+
Ala
GGC
[ENA]
¡û
>W1610743585
LMSY01000001
Bacillota
Bacillus sp. Soil531 [LMSY]
496709
496638
-
Ala
GGC
[ENA]
¡û
>W1610783468
LODM01000012
Bacillota
Priestia megaterium [LODM]
1487436
1487365
-
Ala
GGC
[ENA]
¡û
>W1610857829
LQQQ01000012
Bacillota
Priestia aryabhattai [LQQQ]
624196
624267
+
Ala
GGC
[ENA]
¡û
>W1610888996
LRPG01000082
Bacillota
Priestia megaterium [LRPG]
176255
176326
+
Ala
GGC
[ENA]
¡û
>W1610928111
LUCO01000004
Bacillota
Priestia megaterium [LUCO]
193943
194014
+
Ala
GGC
[ENA]
¡û
>W1710513140
FMZY01000004
Bacillota
Priestia aryabhattai [FMZY]
219206
219277
+
Ala
GGC
[ENA]
¡û
>W1710525843
FNJU01000019
Bacillota
Litchfieldia salsa salsus [FNJU]
49721
49648
-
Ala
GGC
[ENA]
¡û
>W1710562552
FOPA01000010
Bacillota
Priestia megaterium [FOPA]
77170
77241
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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