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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339623 (68 seq.)
>W1710943839
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
896726
896800
+
Gln
TTG
[ENA]
¡û
>W1710943840
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
896844
896918
+
Gln
TTG
[ENA]
¡û
>W1711029704
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
896726
896800
+
Gln
TTG
[ENA]
¡û
>W1711029705
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
896844
896918
+
Gln
TTG
[ENA]
¡û
>W1711065241
LSBQ01000003
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
161660
161586
-
Gln
TTG
[ENA]
¡û
>W1711065242
LSBQ01000003
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
161555
161481
-
Gln
TTG
[ENA]
¡û
>W1711126116
LUNZ01000046
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
3224
3150
-
Gln
TTG
[ENA]
¡û
>W1711126149
LUOA01000032
Gammaproteobacteria
Idiomarina sp. REDSEA-S27_B4 [LUOA]
80734
80808
+
Gln
TTG
[ENA]
¡û
>W1711356914
MDGT01000003
Gammaproteobacteria
Idiomarina sp. MD25a [MDGT]
998654
998580
-
Gln
TTG
[ENA]
¡û
>W131239247
BANL01000021
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
105207
105133
-
Gln
TTG
[ENA]
¡û
>W131239248
BANL01000021
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
105095
105021
-
Gln
TTG
[ENA]
¡û
>C011016
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
992790
992864
+
Gln
TTG
[Ensembl]
¡û
>C011017
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
992902
992976
+
Gln
TTG
[Ensembl]
¡û
>w012955
AAMX01000024
Gammaproteobacteria
Idiomarina baltica OS145 [AAMX]
33045
32969
-
Gln
TTG
[ENA]
¡û
>WENV170112278
CEGE01000799
[CEGE] microbial mat metagenome; grass silage
15662
15736
+
Gln
TTG
[ENA]
¢þ
>WENV170112279
CEGE01000799
[CEGE] microbial mat metagenome; grass silage
15780
15854
+
Gln
TTG
[ENA]
¢þ
>WENV170112597
CEGF01005582
[CEGF] microbial mat metagenome; grass silage
294
220
-
Gln
TTG
[ENA]
¢þ
>WENV170112598
CEGF01005582
[CEGF] microbial mat metagenome; grass silage
176
102
-
Gln
TTG
[ENA]
¢þ
>WENV170414646
CEUK01301322
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
786
712
-
Gln
TTG
[ENA]
¢þ
>WENV170739966
LULR01000072
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
80734
80808
+
Gln
TTG
[ENA]
¢þ
>WENV170744291
LULX01000138
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
3224
3150
-
Gln
TTG
[ENA]
¢þ
>WENV170882536
MDTC01150473
[MDTC] marine metagenome; seawater
26144
26070
-
Gln
TTG
[ENA]
¢þ
>WENV170882537
MDTC01150473
[MDTC] marine metagenome; seawater
26039
25965
-
Gln
TTG
[ENA]
¢þ
>WENV170941978
MDTG01370106
[MDTG] marine metagenome; seawater
16153
16079
-
Gln
TTG
[ENA]
¢þ
>C181059181
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
1651100
1651174
+
Gln
TTG
-
¡û
>C181059182
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
1651218
1651292
+
Gln
TTG
-
¡û
>C181110228
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
164410
164484
+
Gln
TTG
-
¡û
>C181110229
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
164528
164602
+
Gln
TTG
-
¡û
>C181146734
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
933465
933391
-
Gln
TTG
-
¡û
>C181146735
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
933343
933269
-
Gln
TTG
-
¡û
>W1911585178
PIPS01000001
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
358240
358314
+
Gln
TTG
[ENA]
¡û
>W1911585179
PIPS01000001
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
358362
358436
+
Gln
TTG
[ENA]
¡û
>W1911585336
PIPV01000001
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
259081
259007
-
Gln
TTG
[ENA]
¡û
>W1911585602
PIQA01000001
Gammaproteobacteria
Idiomarina piscisalsi TPS4-2 [PIQA]
82173
82099
-
Gln
TTG
[ENA]
¡û
>W1911585603
PIQA01000001
Gammaproteobacteria
Idiomarina piscisalsi TPS4-2 [PIQA]
82054
81980
-
Gln
TTG
[ENA]
¡û
>W1911585702
PIQC01000005
Gammaproteobacteria
Idiomarina ramblicola R22 [PIQC]
174119
174193
+
Gln
TTG
[ENA]
¡û
>W1911585703
PIQC01000005
Gammaproteobacteria
Idiomarina ramblicola R22 [PIQC]
174232
174306
+
Gln
TTG
[ENA]
¡û
>W1911585850
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
375738
375664
-
Gln
TTG
[ENA]
¡û
>W1911585851
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
375603
375529
-
Gln
TTG
[ENA]
¡û
>W1911585936
PIQH01000004
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
97569
97495
-
Gln
TTG
[ENA]
¡û
>W1911585937
PIQH01000004
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
97461
97387
-
Gln
TTG
[ENA]
¡û
>W1810609566
QGUA01000001
Gammaproteobacteria
Idiomarina loihiensis H2.2 [QGUA]
135082
135156
+
Gln
TTG
[ENA]
¡û
>W1810609567
QGUA01000001
Gammaproteobacteria
Idiomarina loihiensis H2.2 [QGUA]
135194
135268
+
Gln
TTG
[ENA]
¡û
>W1810671377
QJST01000001
Gammaproteobacteria
Idiomarina fontislapidosi CECT 5859 [QJST]
259216
259142
-
Gln
TTG
[ENA]
¡û
>W1810785218
QRBK01000001
Gammaproteobacteria
Idiomarina abyssalis 017G.2 [QRBK]
794393
794467
+
Gln
TTG
[ENA]
¡û
>W1810785219
QRBK01000001
Gammaproteobacteria
Idiomarina abyssalis 017G.2 [QRBK]
794505
794579
+
Gln
TTG
[ENA]
¡û
>C131016264
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
992905
992979
+
Gln
TTG
[Ensembl]
¡û
>C131016265
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
993017
993091
+
Gln
TTG
[Ensembl]
¡û
>W1610616481
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
236178
236104
-
Gln
TTG
[ENA]
¡û
>W1610616482
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
236065
235991
-
Gln
TTG
[ENA]
¡û
>W1610621729
LHSG01000002
Gammaproteobacteria
Idiomarina zobellii [LHSG]
135605
135679
+
Gln
TTG
[ENA]
¡û
>W1610621730
LHSG01000002
Gammaproteobacteria
Idiomarina zobellii [LHSG]
135723
135797
+
Gln
TTG
[ENA]
¡û
>W1610800139
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
896726
896800
+
Gln
TTG
[ENA]
¡û
>W1610800140
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
896844
896918
+
Gln
TTG
[ENA]
¡û
>W1610877972
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
896726
896800
+
Gln
TTG
[ENA]
¡û
>W1610877973
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
896844
896918
+
Gln
TTG
[ENA]
¡û
>W1610906030
LSBQ01000003
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
161660
161586
-
Gln
TTG
[ENA]
¡û
>W1610906031
LSBQ01000003
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
161555
161481
-
Gln
TTG
[ENA]
¡û
>W1610937049
LUNZ01000046
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
3224
3150
-
Gln
TTG
[ENA]
¡û
>W1610937082
LUOA01000032
Gammaproteobacteria
Idiomarina sp. REDSEA-S27_B4 [LUOA]
80734
80808
+
Gln
TTG
[ENA]
¡û
>W1710515735
FNCB01000002
Gammaproteobacteria
Idiomarina zobellii [FNCB]
135478
135552
+
Gln
TTG
[ENA]
¡û
>W1710515736
FNCB01000002
Gammaproteobacteria
Idiomarina zobellii [FNCB]
135596
135670
+
Gln
TTG
[ENA]
¡û
>W1710577948
FPBE01000001
Gammaproteobacteria
Idiomarina abyssalis [FPBE]
236869
236795
-
Gln
TTG
[ENA]
¡û
>W1710577949
FPBE01000001
Gammaproteobacteria
Idiomarina abyssalis [FPBE]
236756
236682
-
Gln
TTG
[ENA]
¡û
>W1710741616
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
236178
236104
-
Gln
TTG
[ENA]
¡û
>W1710741617
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
236065
235991
-
Gln
TTG
[ENA]
¡û
>W1710752602
LHSG01000002
Gammaproteobacteria
Idiomarina zobellii [LHSG]
135605
135679
+
Gln
TTG
[ENA]
¡û
>W1710752603
LHSG01000002
Gammaproteobacteria
Idiomarina zobellii [LHSG]
135723
135797
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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