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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339638 (106 seq.)
>W1710778265
LJCU01000247
Actinomycetota
Actinobacteria bacterium OK006 [LJCU]
151845
151773
-
Gln
CTG
[ENA]
¡û
>W1710778333
LJCV01000285
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
107945
108017
+
Gln
CTG
[ENA]
¡û
>W1710778429
LJCX01000024
Actinomycetota
Actinobacteria bacterium OV320 [LJCX]
213890
213818
-
Gln
CTG
[ENA]
¡û
>W1710861251
LMDL01000056
Actinomycetota
Streptomyces sp. Root369 [LMDL]
161208
161280
+
Gln
CTG
[ENA]
¡û
>W1710862829
LMEQ01000003
Actinomycetota
Streptomyces sp. Root1310 [LMEQ]
208818
208746
-
Gln
CTG
[ENA]
¡û
>W1710868340
LMIZ01000026
Actinomycetota
Streptomyces sp. Root264 [LMIZ]
26474
26546
+
Gln
CTG
[ENA]
¡û
>W1710884336
LMWM01000050
Actinomycetota
Streptomyces pseudovenezuelae [LMWM]
213134
213062
-
Gln
CTG
[ENA]
¡û
>W1710884451
LMWO01000032
Actinomycetota
Streptomyces canus ciscaucasicus [LMWO]
153273
153345
+
Gln
CTG
[ENA]
¡û
>W1710884847
LMWU01000029
Actinomycetota
Streptomyces canus [LMWU]
178603
178675
+
Gln
CTG
[ENA]
¡û
>W1711049563
LRQW01000409
Actinomycetota
Streptomyces scabiei [LRQW]
13713
13641
-
Gln
CTG
[ENA]
¡û
>W1711049629
LRQX01000465
Actinomycetota
Streptomyces scabiei [LRQX]
6282
6210
-
Gln
CTG
[ENA]
¡û
>W1711052202
LRSS01000443
Actinomycetota
Streptomyces scabiei [LRSS]
6336
6264
-
Gln
CTG
[ENA]
¡û
>W1711054032
LRTM01000520
Actinomycetota
Streptomyces scabiei [LRTM]
6165
6093
-
Gln
CTG
[ENA]
¡û
>W1711054098
LRTN01000496
Actinomycetota
Streptomyces scabiei [LRTN]
6265
6193
-
Gln
CTG
[ENA]
¡û
>W1711054170
LRTO01000424
Actinomycetota
Streptomyces scabiei [LRTO]
13729
13657
-
Gln
CTG
[ENA]
¡û
>W1711054317
LRTQ01000537
Actinomycetota
Streptomyces europaeiscabiei [LRTQ]
14185
14113
-
Gln
CTG
[ENA]
¡û
>W1711054368
LRTR01000134
Actinomycetota
Streptomyces europaeiscabiei [LRTR]
14183
14111
-
Gln
CTG
[ENA]
¡û
>W1711089695
LSZY01000339
Actinomycetota
Streptomyces scabiei [LSZY]
6166
6094
-
Gln
CTG
[ENA]
¡û
>W131185429
ARTR01000068
Actinomycetota
Streptomyces sp. 303MFCol5.2 [ARTR]
224645
224573
-
Gln
CTG
[ENA]
¡û
>W131241178
BARF01000042
Actinomycetota
Streptomyces prunicolor NBRC 13075 [BARF]
112354
112426
+
Gln
CTG
[ENA]
¡û
>W131241247
BARG01000029
Actinomycetota
Streptomyces hokutonensis R1-NS-10 [BARG]
97974
98046
+
Gln
CTG
[ENA]
¡û
>W1711455823
MJAH01000020
Actinomycetota
Streptomyces sp. LUP47B LUP47b [MJAH]
7058
7130
+
Gln
CTG
[ENA]
¡û
>W1711511692
MLCQ01000018
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
102216
102290
+
Gln
CTG
[ENA]
¡û
>W1711628556
MPOH02000009
Actinomycetota
Streptomyces phaeoluteigriseus [MPOH]
568893
568821
-
Gln
CTG
[ENA]
¡û
>W1711738225
MUBA01000079
Actinomycetota
Streptomyces bobili [MUBA]
13273
13201
-
Gln
CTG
[ENA]
¡û
>W1711750966
MUNI01000001
Actinomycetota
Streptomyces reticuliscabiei [MUNI]
21333
21405
+
Gln
CTG
[ENA]
¡û
>W1711783125
MVNU01000350
Actinomycetota
Streptomyces scabiei [MVNU]
7607
7679
+
Gln
CTG
[ENA]
¡û
>W1711942027
NAVC01000018
Actinomycetota
Streptomyces sp. B9173 [NAVC]
80
152
+
Gln
CTG
[ENA]
¡û
>W1712081458
NHOD01000161
Actinomycetota
Streptomyces griseiscabiei scabiei [NHOD]
10449
10377
-
Gln
CTG
[ENA]
¡û
>W131000207
AEJB01000682
Actinomycetota
Streptomyces turgidiscabies Car8 [AEJB]
1055
1127
+
Gln
CTG
[ENA]
¡û
>W131087100
AOCF01000021
Actinomycetota
Streptomyces bottropensis ATCC 25435 [AOCF]
85914
85842
-
Gln
CTG
[ENA]
¡û
>W131185271
ARTP01000003
Actinomycetota
Streptomyces bottropensis ATCC 25435 [ARTP]
124560
124632
+
Gln
CTG
[ENA]
¡û
>W131185347
ARTQ01000114
Actinomycetota
Streptomyces canus 299MFChir4.1 [ARTQ]
92508
92436
-
Gln
CTG
[ENA]
¡û
>C171064743
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
1274297
1274223
-
Gln
CTG
-
¡û
>WENV180697526
ODDE01001036
[ODDE] human metagenome; G_DNA_Supragingival plaque
6111
6039
-
Gln
CTG
[ENA]
¢þ
>WENV180733450
ODGZ01000045
[ODGZ] human metagenome; G_DNA_Supragingival plaque
59093
59165
+
Gln
CTG
[ENA]
¢þ
>WENV180773419
ODIJ01000237
[ODIJ] human metagenome; G_DNA_Tongue dorsum
23528
23456
-
Gln
CTG
[ENA]
¢þ
>WENV180842702
ODKM01146402
[ODKM] human metagenome; G_DNA_Buccal mucosa
154
82
-
Gln
CTG
[ENA]
¢þ
>WENV180976281
ODUY01070638
[ODUY] human metagenome; G_DNA_Supragingival plaque
515
443
-
Gln
CTG
[ENA]
¢þ
>WENV180986768
ODVK01000743
[ODVK] human metagenome; G_DNA_Supragingival plaque
10886
10814
-
Gln
CTG
[ENA]
¢þ
>WENV181066886
ODZI01003028
[ODZI] human metagenome; G_DNA_Supragingival plaque
4708
4780
+
Gln
CTG
[ENA]
¢þ
>WENV181090487
OEBC01000684
[OEBC] human metagenome; G_DNA_Supragingival plaque
5135
5207
+
Gln
CTG
[ENA]
¢þ
>W08006737
ABJJ01000020
Actinomycetota
Streptomyces sviceus ATCC 29083 [ABJJ]
10296
10224
-
Gln
CTG
[ENA]
¡û
>WENV181158995
OEIH01026901
[OEIH] human metagenome; G_DNA_Supragingival plaque
697
769
+
Gln
CTG
[ENA]
¢þ
>WENV181179094
OEJT01001314
[OEJT] human metagenome; G_DNA_Supragingival plaque
7449
7377
-
Gln
CTG
[ENA]
¢þ
>WENV181180563
OEJU01000234
[OEJU] human metagenome; G_DNA_Supragingival plaque
13919
13991
+
Gln
CTG
[ENA]
¢þ
>WENV182645974
OJLZ01016615
[OJLZ] metagenome; surface
721
649
-
Gln
CTG
[ENA]
¢þ
>C181164829
CP028369
Actinomycetota
Streptomyces sp. P3 [CP028369]
394766
394694
-
Gln
CTG
-
¡û
>C191083803
CP031969
Actinomycetota
Streptomyces sp. CC0208 [CP031969]
2641841
2641769
-
Gln
CTG
-
¡û
>W141755435
JNWO01000019
Actinomycetota
Streptomyces xylophagus [JNWO]
170196
170268
+
Gln
CTG
[ENA]
¡û
>W141756422
JNXE01000016
Actinomycetota
Streptomyces sp. NRRL F-525 [JNXE]
124753
124681
-
Gln
CTG
[ENA]
¡û
>W141760803
JOAH01001186
Actinomycetota
Streptomyces sp. NRRL B-24501 [JOAH]
35
107
+
Gln
CTG
[ENA]
¡û
>W141763336
JOBZ01000421
Actinomycetota
Streptomyces sp. NRRL WC-3774 [JOBZ]
9159
9231
+
Gln
CTG
[ENA]
¡û
>W141767991
JOEY01000036
Actinomycetota
Streptomyces fulvoviolaceus [JOEY]
18873
18945
+
Gln
CTG
[ENA]
¡û
>W141808272
JPPW01000123
Actinomycetota
Streptomyces scabiei [JPPW]
43515
43443
-
Gln
CTG
[ENA]
¡û
>W141808357
JPPX01000125
Actinomycetota
Streptomyces scabiei [JPPX]
9809
9881
+
Gln
CTG
[ENA]
¡û
>W141816429
JQJV01000071
Actinomycetota
Streptomyces mirabilis [JQJV]
35556
35628
+
Gln
CTG
[ENA]
¡û
>W1911497255
OCNG01000001
Actinomycetota
Streptomyces sp. 1222.2 [OCNG]
2738419
2738347
-
Gln
CTG
[ENA]
¡û
>W1911497594
OCQN01000001
Actinomycetota
Streptomyces sp. OK228 [OCQN]
8233215
8233287
+
Gln
CTG
[ENA]
¡û
>W1911553027
PCGU01000125
Actinomycetota
Streptomyces europaeiscabiei ST1229 [PCGU]
14191
14119
-
Gln
CTG
[ENA]
¡û
>W1911678832
QHJL01000037
Actinomycetota
Streptomyces sp. WAC 05379 [QHJL]
14053
13981
-
Gln
CTG
[ENA]
¡û
>W1911744406
QVOF01000001
Actinomycetota
Streptomyces chartreusis WZS021 [QVOF]
224454
224382
-
Gln
CTG
[ENA]
¡û
>W1810072551
PEFK01000001
Actinomycetota
Streptomyces sp. 1121.2 [PEFK]
2928062
2927990
-
Gln
CTG
[ENA]
¡û
>W1810072738
PEFM01000001
Actinomycetota
Streptomyces sp. 94 [PEFM]
3956159
3956087
-
Gln
CTG
[ENA]
¡û
>W1810172047
PJME01000009
Actinomycetota
Streptomyces geranii A301 [PJME]
223634
223706
+
Gln
CTG
[ENA]
¡û
>W1810187370
PKHN01000008
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
73299
73227
-
Gln
CTG
[ENA]
¡û
>W1510020918
BBYG01000009
Actinomycetota
Streptomyces sp. NBRC 110468 [BBYG]
193630
193558
-
Gln
CTG
[ENA]
¡û
>C10112558
FN554889
Actinomycetota
Streptomyces scabiei 87.22 [FN554889]
3032274
3032202
-
Gln
CTG
[Ensembl]
¡û
>W1511310011
JPPZ01000276
Actinomycetota
Streptomyces stelliscabiei P3825 [JPPZ]
24599
24671
+
Gln
CTG
[ENA]
¡û
>W1511511569
JXTE01000019
Actinomycetota
Streptomyces sp. WM6386 [JXTE]
62643
62571
-
Gln
CTG
[ENA]
¡û
>W1511542066
JZFA01000012
Actinomycetota
Corynebacterium argentoratense CNM 601/08 [JZFA]
82472
82400
-
Gln
CTG
[ENA]
¡û
>W1511595827
LBNJ01000286
Actinomycetota
Streptomyces scabiei NRRL B-16523 [LBNJ]
9789
9861
+
Gln
CTG
[ENA]
¡û
>W1511596091
LBNW01000031
Actinomycetota
Streptomyces stelliscabiei NRRL B-24447 [LBNW]
9438
9510
+
Gln
CTG
[ENA]
¡û
>W1511620690
LCTL01000279
Actinomycetota
Streptomyces europaeiscabiei NRRL B-24443 [LCTL]
5552
5624
+
Gln
CTG
[ENA]
¡û
>W1511696219
LGDG01000017
Actinomycetota
Streptomyces sp. MMG1533 [LGDG]
9222
9294
+
Gln
CTG
[ENA]
¡û
>W1511697303
LGDW01000001
Actinomycetota
Streptomyces sp. NRRL WC-3618 [LGDW]
78600
78528
-
Gln
CTG
[ENA]
¡û
>W1511697795
LGEE01000036
Actinomycetota
Streptomyces sp. NRRL F-6491 [LGEE]
11374
11446
+
Gln
CTG
[ENA]
¡û
>C161041067
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
882489
882415
-
Gln
CTG
[Ensembl]
¡û
>W1610061294
BCMM01000048
Actinomycetota
Streptomyces scabiei [BCMM]
42286
42358
+
Gln
CTG
[ENA]
¡û
>W1610061345
BCMN01000017
Actinomycetota
Streptomyces turgidiscabies [BCMN]
86253
86181
-
Gln
CTG
[ENA]
¡û
>W1610633313
LIQQ01000050
Actinomycetota
Streptomyces graminilatus [LIQQ]
14170
14098
-
Gln
CTG
[ENA]
¡û
>W1610633848
LIQZ01000149
Actinomycetota
Streptomyces phaeochromogenes [LIQZ]
40436
40508
+
Gln
CTG
[ENA]
¡û
>W1610642484
LJCU01000247
Actinomycetota
Actinobacteria bacterium OK006 [LJCU]
151845
151773
-
Gln
CTG
[ENA]
¡û
>W1610642552
LJCV01000285
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
107945
108017
+
Gln
CTG
[ENA]
¡û
>W1610723597
LMDL01000056
Actinomycetota
Streptomyces sp. Root369 [LMDL]
161208
161280
+
Gln
CTG
[ENA]
¡û
>W1610725175
LMEQ01000003
Actinomycetota
Streptomyces sp. Root1310 [LMEQ]
208818
208746
-
Gln
CTG
[ENA]
¡û
>W1610730686
LMIZ01000026
Actinomycetota
Streptomyces sp. Root264 [LMIZ]
26474
26546
+
Gln
CTG
[ENA]
¡û
>W1610746262
LMWM01000050
Actinomycetota
Streptomyces pseudovenezuelae [LMWM]
213134
213062
-
Gln
CTG
[ENA]
¡û
>W1610746377
LMWO01000032
Actinomycetota
Streptomyces canus ciscaucasicus [LMWO]
153273
153345
+
Gln
CTG
[ENA]
¡û
>W1610746773
LMWU01000029
Actinomycetota
Streptomyces canus [LMWU]
178603
178675
+
Gln
CTG
[ENA]
¡û
>W1610890692
LRQW01000409
Actinomycetota
Streptomyces scabiei [LRQW]
13713
13641
-
Gln
CTG
[ENA]
¡û
>W1610890758
LRQX01000465
Actinomycetota
Streptomyces scabiei [LRQX]
6282
6210
-
Gln
CTG
[ENA]
¡û
>W1610893390
LRSS01000443
Actinomycetota
Streptomyces scabiei [LRSS]
6336
6264
-
Gln
CTG
[ENA]
¡û
>W1610895220
LRTM01000520
Actinomycetota
Streptomyces scabiei [LRTM]
6165
6093
-
Gln
CTG
[ENA]
¡û
>W1610895286
LRTN01000496
Actinomycetota
Streptomyces scabiei [LRTN]
6265
6193
-
Gln
CTG
[ENA]
¡û
>W1610895358
LRTO01000424
Actinomycetota
Streptomyces scabiei [LRTO]
13729
13657
-
Gln
CTG
[ENA]
¡û
>W1610895505
LRTQ01000537
Actinomycetota
Streptomyces europaeiscabiei [LRTQ]
14185
14113
-
Gln
CTG
[ENA]
¡û
>W1610895556
LRTR01000134
Actinomycetota
Streptomyces europaeiscabiei [LRTR]
14183
14111
-
Gln
CTG
[ENA]
¡û
>W1610924152
LSZY01000339
Actinomycetota
Streptomyces scabiei [LSZY]
6166
6094
-
Gln
CTG
[ENA]
¡û
>W1710058959
BCMM01000048
Actinomycetota
Streptomyces scabiei [BCMM]
42286
42358
+
Gln
CTG
[ENA]
¡û
>W1710059010
BCMN01000017
Actinomycetota
Streptomyces turgidiscabies [BCMN]
86253
86181
-
Gln
CTG
[ENA]
¡û
>W1710536762
FNTK01000001
Actinomycetota
Streptomyces sp. 3213.3 3213 [FNTK]
7667640
7667712
+
Gln
CTG
[ENA]
¡û
>W1710550383
FOFF01000081
Actinomycetota
Streptomyces sp. yr375 [FOFF]
175
103
-
Gln
CTG
[ENA]
¡û
>W1710767745
LIQQ01000050
Actinomycetota
Streptomyces graminilatus [LIQQ]
14170
14098
-
Gln
CTG
[ENA]
¡û
>W1710768280
LIQZ01000149
Actinomycetota
Streptomyces phaeochromogenes [LIQZ]
40436
40508
+
Gln
CTG
[ENA]
¡û
>W1710773232
LIVV01000006
Actinomycetota
Streptomyces sp. CB02009 [LIVV]
517410
517482
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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