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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339659 (37 seq.)
>W1711071232
LSGP01000011
Bacillota
Anaerosporomusa subterranea [LSGP]
1266
1192
-
Glu
TTC
[ENA]
¡û
>W1711071244
LSGP01000013
Bacillota
Anaerosporomusa subterranea [LSGP]
157348
157422
+
Glu
TTC
[ENA]
¡û
>W1711071262
LSGP01000017
Bacillota
Anaerosporomusa subterranea [LSGP]
836733
836807
+
Glu
TTC
[ENA]
¡û
>W1711071275
LSGP01000020
Bacillota
Anaerosporomusa subterranea [LSGP]
188225
188299
+
Glu
TTC
[ENA]
¡û
>WENV180504411
OCAN01002420
[OCAN] human gut metagenome; faeces
6378
6304
-
Glu
TTC
[ENA]
¢þ
>WENV181360654
OFMX01063145
[OFMX] human gut metagenome; human gut
105
31
-
Glu
TTC
[ENA]
¢þ
>WENV182405359
OIEV01003504
[OIEV] human gut metagenome; human gut
275
349
+
Glu
TTC
[ENA]
¢þ
>WENV182405380
OIEV01003662
[OIEV] human gut metagenome; human gut
2626
2700
+
Glu
TTC
[ENA]
¢þ
>WENV183206468
OLQA01000970
[OLQA] human gut metagenome; faeces
20733
20807
+
Glu
TTC
[ENA]
¢þ
>WENV183436497
OMCC01008652
[OMCC] human gut metagenome; feces
2345
2419
+
Glu
TTC
[ENA]
¢þ
>WENV183745941
POVV01002229
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
4626
4552
-
Glu
TTC
[ENA]
¢þ
>C191064420
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3802391
3802465
+
Glu
TTC
-
¡û
>C191064434
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
4283925
4283999
+
Glu
TTC
-
¡û
>C191064446
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
1902028
1901954
-
Glu
TTC
-
¡û
>C191219495
LR215983
Bacillota
Eubacterium limosum [LR215983]
293408
293482
+
Glu
TTC
-
¡û
>C191219505
LR215983
Bacillota
Eubacterium limosum [LR215983]
733465
733539
+
Glu
TTC
-
¡û
>C191219529
LR215983
Bacillota
Eubacterium limosum [LR215983]
3151219
3151145
-
Glu
TTC
-
¡û
>W1910639090
LSLL01000038
Bacillota
Sporomusa acidovorans DSM 3132 [LSLL]
89148
89222
+
Glu
TTC
[ENA]
¡û
>W1910639102
LSLL01000048
Bacillota
Sporomusa acidovorans DSM 3132 [LSLL]
23533
23459
-
Glu
TTC
[ENA]
¡û
>W1910639115
LSLL01000054
Bacillota
Sporomusa acidovorans DSM 3132 [LSLL]
97366
97292
-
Glu
TTC
[ENA]
¡û
>W1910639127
LSLL01000070
Bacillota
Sporomusa acidovorans DSM 3132 [LSLL]
54764
54690
-
Glu
TTC
[ENA]
¡û
>W1810609751
QGUD01000004
Bacillota
Eubacterium limosum 8486cho [QGUD]
394134
394060
-
Glu
TTC
[ENA]
¡û
>W1810609763
QGUD01000010
Bacillota
Eubacterium limosum 8486cho [QGUD]
70731
70657
-
Glu
TTC
[ENA]
¡û
>C151038570
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
3267069
3266995
-
Glu
TTC
[Ensembl]
¡û
>W11161298
AFGF01000017
Bacillota
Acetonema longum DSM 6540 [AFGF]
29612
29686
+
Glu
TTC
[ENA]
¡û
>W11161333
AFGF01000121
Bacillota
Acetonema longum DSM 6540 [AFGF]
52166
52240
+
Glu
TTC
[ENA]
¡û
>W121101675
AKVN01000009
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
209246
209320
+
Glu
TTC
[ENA]
¡û
>W1610910492
LSGP01000011
Bacillota
Anaerosporomusa subterranea [LSGP]
1266
1192
-
Glu
TTC
[ENA]
¡û
>W1610910504
LSGP01000013
Bacillota
Anaerosporomusa subterranea [LSGP]
157348
157422
+
Glu
TTC
[ENA]
¡û
>W1610910522
LSGP01000017
Bacillota
Anaerosporomusa subterranea [LSGP]
836733
836807
+
Glu
TTC
[ENA]
¡û
>W1610910535
LSGP01000020
Bacillota
Anaerosporomusa subterranea [LSGP]
188225
188299
+
Glu
TTC
[ENA]
¡û
>W1710571968
FOWI01000005
Bacillota
Eubacterium callanderi [FOWI]
53414
53488
+
Glu
TTC
[ENA]
¡û
>W1710571972
FOWI01000006
Bacillota
Eubacterium callanderi [FOWI]
483
557
+
Glu
TTC
[ENA]
¡û
>W1710571984
FOWI01000008
Bacillota
Eubacterium callanderi [FOWI]
483
557
+
Glu
TTC
[ENA]
¡û
>W1710591268
FRBP01000001
Bacillota
Eubacterium callanderi [FRBP]
367864
367790
-
Glu
TTC
[ENA]
¡û
>W1710591280
FRBP01000004
Bacillota
Eubacterium callanderi [FRBP]
158
232
+
Glu
TTC
[ENA]
¡û
>W1710591306
FRBP01000012
Bacillota
Eubacterium callanderi [FRBP]
173066
172992
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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