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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339767 (95 seq.)
>W1710876410
LMPF01000001
Betaproteobacteria
Burkholderia sp. Leaf177 [LMPF]
439688
439614
-
Arg
CCT
[ENA]
¡û
>W1711208468
LXGI01000104
Betaproteobacteria
Paraburkholderia tropica [LXGI]
69586
69660
+
Arg
CCT
[ENA]
¡û
>W1711307449
MAOS01000061
Betaproteobacteria
Pandoraea sp. ISTKB [MAOS]
94094
94020
-
Arg
CCT
[ENA]
¡û
>W1711345498
MCNV01000008
Betaproteobacteria
Paraburkholderia nodosa [MCNV]
175052
175126
+
Arg
CCT
[ENA]
¡û
>W1711689379
MSDZ01000064
Betaproteobacteria
Paraburkholderia tropica [MSDZ]
171505
171579
+
Arg
CCT
[ENA]
¡û
>W1711706646
MSRG01000075
Betaproteobacteria
Caballeronia sordidicola [MSRG]
27253
27327
+
Arg
CCT
[ENA]
¡û
>W1711957321
NBTY01000033
Betaproteobacteria
Caballeronia sordidicola [NBTY]
27215
27289
+
Arg
CCT
[ENA]
¡û
>W1711957401
NBTZ01000131
Betaproteobacteria
Caballeronia sordidicola [NBTZ]
27249
27323
+
Arg
CCT
[ENA]
¡û
>W1712077261
NGUT01000022
Betaproteobacteria
Paraburkholderia caledonica [NGUT]
10748
10822
+
Arg
CCT
[ENA]
¡û
>W1712081807
NHOM01000001
Betaproteobacteria
Burkholderia sp. Bk [NHOM]
21998
22072
+
Arg
CCT
[ENA]
¡û
>W131184568
ARSZ01000033
Betaproteobacteria
Paraburkholderia caledonica 376MFSha3.1 [ARSZ]
274203
274129
-
Arg
CCT
[ENA]
¡û
>W131202903
ASXI01000043
Betaproteobacteria
Paraburkholderia phenoliruptrix AC1100 [ASXI]
18025
18099
+
Arg
CCT
[ENA]
¡û
>W131218563
ATXV01000009
Betaproteobacteria
Burkholderia sp. URHA0054 [ATXV]
259415
259489
+
Arg
CCT
[ENA]
¡û
>WENV180017598
FSXK01000562
[FSXK] metagenome; soil
3003
3077
+
Arg
CCT
[ENA]
¢þ
>WENV180017609
FSXK01000961
[FSXK] metagenome; soil
86
160
+
Arg
CCT
[ENA]
¢þ
>WENV180031998
FTJU01004368
[FTJU] metagenome; soil
608
534
-
Arg
CCT
[ENA]
¢þ
>WENV180032443
FTJZ01220759
[FTJZ] metagenome; soil
139
65
-
Arg
CCT
[ENA]
¢þ
>W08008484
ABLD01000004
Betaproteobacteria
Paraburkholderia graminis C4D1M [ABLD]
213129
213203
+
Arg
CCT
[ENA]
¡û
>W141149716
AWZT01000008
Betaproteobacteria
Paraburkholderia dilworthii [AWZT]
173861
173787
-
Arg
CCT
[ENA]
¡û
>W141149783
AWZV01000004
Betaproteobacteria
Burkholderia sp. WSM2232 [AWZV]
395044
394970
-
Arg
CCT
[ENA]
¡û
>W141150405
AXAJ01000004
Betaproteobacteria
Burkholderia sp. WSM2230 [AXAJ]
246277
246351
+
Arg
CCT
[ENA]
¡û
>W141150610
AXAN01000008
Betaproteobacteria
Paraburkholderia mimosarum LMG 23256 [AXAN]
160624
160550
-
Arg
CCT
[ENA]
¡û
>W141150651
AXAO01000005
Betaproteobacteria
Paraburkholderia mimosarum STM 3621 [AXAO]
158659
158733
+
Arg
CCT
[ENA]
¡û
>W141219885
AZXJ01000005
Betaproteobacteria
Burkholderia sp. JPY366 [AZXJ]
224236
224162
-
Arg
CCT
[ENA]
¡û
>W141235324
BAXZ01000012
Betaproteobacteria
Paraburkholderia acidipaludis NBRC 101816 [BAXZ]
70659
70733
+
Arg
CCT
[ENA]
¡û
>W141235363
BAYA01000006
Betaproteobacteria
Paraburkholderia bannensis NBRC 103871 [BAYA]
39994
40068
+
Arg
CCT
[ENA]
¡û
>W141235535
BAYD01000035
Betaproteobacteria
Paraburkholderia oxyphila NBRC 105797 [BAYD]
37117
37043
-
Arg
CCT
[ENA]
¡û
>W141235563
BAYE01000001
Betaproteobacteria
Paraburkholderia caledonica NBRC 102488 [BAYE]
597004
597078
+
Arg
CCT
[ENA]
¡û
>W141237471
BBJH01000052
Betaproteobacteria
Paraburkholderia heleia NBRC 101817 [BBJH]
51925
51999
+
Arg
CCT
[ENA]
¡û
>W141237546
BBJJ01000009
Betaproteobacteria
Paraburkholderia mimosarum NBRC 106338 [BBJJ]
160385
160311
-
Arg
CCT
[ENA]
¡û
>W141267650
CCNS01000018
Betaproteobacteria
Caballeronia glathei [CCNS]
10756
10682
-
Arg
CCT
[ENA]
¡û
>W141278013
JAFA01000016
Betaproteobacteria
Paraburkholderia nodosa DSM 21604 [JAFA]
160366
160440
+
Arg
CCT
[ENA]
¡û
>C181108290
CP024905
Betaproteobacteria
Paraburkholderia caledonica PHRS4 [CP024905, CP024906]
1033964
1033890
-
Arg
CCT
-
¡û
>C181109034
CP024934
Betaproteobacteria
Paraburkholderia graminis PHS1 [CP024934, CP024935]
1084566
1084492
-
Arg
CCT
-
¡û
>C181182505
CP029640
Betaproteobacteria
Paraburkholderia dokdonensis DCR13 [CP029640, CP029641]
838675
838601
-
Arg
CCT
-
¡û
>W141727680
JNFG01000032
Betaproteobacteria
Caballeronia sordidicola [JNFG]
26501
26427
-
Arg
CCT
[ENA]
¡û
>W1910804551
MTHB01000063
Betaproteobacteria
Caballeronia sordidicola PAMC 26633 [MTHB]
53978
53904
-
Arg
CCT
[ENA]
¡û
>W1910822060
MWMK01000029
Betaproteobacteria
Paraburkholderia strydomiana WK1.1f [MWMK]
48169
48095
-
Arg
CCT
[ENA]
¡û
>W1911497945
OCSU01000002
Betaproteobacteria
Caballeronia arationis OK806 [OCSU]
2366457
2366383
-
Arg
CCT
[ENA]
¡û
>W1911498141
OCSX01000001
Betaproteobacteria
Burkholderia sp. D7 [OCSX]
1456042
1455968
-
Arg
CCT
[ENA]
¡û
>W1810200670
PNXY01000001
Betaproteobacteria
Paraburkholderia rhynchosiae WSM 3937 [PNXY]
22171
22245
+
Arg
CCT
[ENA]
¡û
>W1810252038
PQGA01000001
Betaproteobacteria
Paraburkholderia eburnea JCM 18070 [PQGA]
167185
167259
+
Arg
CCT
[ENA]
¡û
>W1810365358
PVUA01000001
Betaproteobacteria
Paraburkholderia eburnea LMG 29537 [PVUA]
167185
167259
+
Arg
CCT
[ENA]
¡û
>W1810477181
QAOP01000014
Betaproteobacteria
Paraburkholderia sp. GV072 [QAOP]
252356
252430
+
Arg
CCT
[ENA]
¡û
>W1810513942
QBUB01000013
Betaproteobacteria
Paraburkholderia sp. GV068 [QBUB]
2328
2254
-
Arg
CCT
[ENA]
¡û
>W1810577191
QEOB01000019
Betaproteobacteria
Paraburkholderia unamae SCZa-39 [QEOB]
8964
8890
-
Arg
CCT
[ENA]
¡û
>W1810577730
QEOL01000021
Betaproteobacteria
Paraburkholderia silvatlantica PSCR-88 [QEOL]
18805
18731
-
Arg
CCT
[ENA]
¡û
>W1810628686
QICR01000001
Betaproteobacteria
Paraburkholderia sp. OV446 [QICR]
513783
513709
-
Arg
CCT
[ENA]
¡û
>W1810629078
QICY01000013
Betaproteobacteria
Paraburkholderia caballeronis TNe-878 [QICY]
164026
164100
+
Arg
CCT
[ENA]
¡û
>W1810629266
QIMG01000020
Betaproteobacteria
Paraburkholderia silvatlantica TPCrh-89 [QIMG]
18805
18731
-
Arg
CCT
[ENA]
¡û
>W1810659058
QJJT01000013
Betaproteobacteria
Paraburkholderia caballeronis TNe-835 [QJJT]
164026
164100
+
Arg
CCT
[ENA]
¡û
>W1810659128
QJJV01000008
Betaproteobacteria
Paraburkholderia tropica SIr-6563 [QJJV]
177567
177493
-
Arg
CCT
[ENA]
¡û
>W1810671241
QJSQ01000020
Betaproteobacteria
Paraburkholderia silvatlantica SRCL-318 [QJSQ]
150618
150692
+
Arg
CCT
[ENA]
¡û
>W1810676592
QKMC01000014
Betaproteobacteria
Paraburkholderia sp. GV052 [QKMC]
252504
252578
+
Arg
CCT
[ENA]
¡û
>W1810682287
QKTZ01000012
Betaproteobacteria
Paraburkholderia sp. PDC91 [QKTZ]
207371
207445
+
Arg
CCT
[ENA]
¡û
>W1810685153
QKZC01000008
Betaproteobacteria
Paraburkholderia tropica SIr-6529 [QKZC]
177567
177493
-
Arg
CCT
[ENA]
¡û
>W1810695841
QLSU01000017
Betaproteobacteria
Paraburkholderia unamae CATux-332 [QLSU]
163977
164051
+
Arg
CCT
[ENA]
¡û
>C151004847
CP003863
Betaproteobacteria
Paraburkholderia phenoliruptrix BR3459a [CP003863, CP003864]
1086157
1086083
-
Arg
CCT
[Ensembl]
¡û
>C151092485
CP012192
Betaproteobacteria
Burkholderia sp. HB1 [CP012192, CP012193]
1015623
1015549
-
Arg
CCT
-
¡û
>W10111440
ADDJ01000011
Betaproteobacteria
Burkholderia sp. CCGE1001 [ADDJ]
184933
184859
-
Arg
CCT
[ENA]
¡û
>W10115257
ADJP01000008
Betaproteobacteria
Burkholderia sp. CCGE1003 [ADJP]
293374
293300
-
Arg
CCT
[ENA]
¡û
>C11104323
CP002519
Betaproteobacteria
Burkholderia sp. CCGE1001 [CP002519]
1004809
1004735
-
Arg
CCT
[Ensembl]
¡û
>C11104386
CP002217
Betaproteobacteria
Burkholderia sp. CCGE1003 [CP002217]
1106236
1106162
-
Arg
CCT
[Ensembl]
¡û
>W11114383
ADDJ01000011
Betaproteobacteria
Burkholderia sp. CCGE1001 [ADDJ]
184933
184859
-
Arg
CCT
[ENA]
¡û
>W11118843
ADJP01000008
Betaproteobacteria
Burkholderia sp. CCGE1003 [ADJP]
293374
293300
-
Arg
CCT
[ENA]
¡û
>W1511397766
JTDB01000008
Betaproteobacteria
Paraburkholderia sacchari LMG 19450 [JTDB]
111631
111705
+
Arg
CCT
[ENA]
¡û
>W1511684863
LFMX01000009
Betaproteobacteria
Candidatus Burkholderia humilis humilis UZHbot5 [LFMX]
16715
16789
+
Arg
CCT
[ENA]
¡û
>W1511706168
LGTG01000395
Betaproteobacteria
Candidatus Burkholderia crenata crenata UZHbot9 [LGTG]
538
612
+
Arg
CCT
[ENA]
¡û
>C161070771
CP014306
Betaproteobacteria
Burkholderia sp. PAMC 26561 [CP014306, CP014307, CP014315]
2306543
2306469
-
Arg
CCT
[Ensembl]
¡û
>C161073101
CP014505
Betaproteobacteria
Burkholderia sp. PAMC 28687 [CP014505, CP014506, CP014507]
928363
928289
-
Arg
CCT
[Ensembl]
¡û
>W1610002280
AEJF01000188
Betaproteobacteria
Caballeronia mineralivorans PML1(12) [AEJF]
31464
31390
-
Arg
CCT
[ENA]
¡û
>W1610054093
BBSM01000048
Betaproteobacteria
Burkholderia sp. E7m48 [BBSM]
100724
100650
-
Arg
CCT
[ENA]
¡û
>W1610206138
FCNY02000002
Betaproteobacteria
Caballeronia cordobensis [FCNY]
64870
64944
+
Arg
CCT
[ENA]
¡û
>W1610206349
FCOC02000001
Betaproteobacteria
Caballeronia sordidicola [FCOC]
604908
604982
+
Arg
CCT
[ENA]
¡û
>W1610206765
FCOJ02000067
Betaproteobacteria
Caballeronia glebae LMG 29325 [FCOJ]
10477
10551
+
Arg
CCT
[ENA]
¡û
>W1610206808
FCOK02000063
Betaproteobacteria
Caballeronia udeis [FCOK]
54329
54403
+
Arg
CCT
[ENA]
¡û
>W1610206959
FCON02000017
Betaproteobacteria
Caballeronia choica [FCON]
8142
8068
-
Arg
CCT
[ENA]
¡û
>W1610538088
JRTU01000006
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRTU]
36266
36340
+
Arg
CCT
[ENA]
¡û
>W1610538816
JRZC01000103
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRZC]
44026
43952
-
Arg
CCT
[ENA]
¡û
>W1610738756
LMPF01000001
Betaproteobacteria
Burkholderia sp. Leaf177 [LMPF]
439688
439614
-
Arg
CCT
[ENA]
¡û
>W1610996230
LXGI01000104
Betaproteobacteria
Paraburkholderia tropica [LXGI]
69586
69660
+
Arg
CCT
[ENA]
¡û
>W1710003719
AEJF01000188
Betaproteobacteria
Caballeronia mineralivorans PML1(12) [AEJF]
31464
31390
-
Arg
CCT
[ENA]
¡û
>W1710050792
BBSM01000048
Betaproteobacteria
Burkholderia sp. E7m48 [BBSM]
100724
100650
-
Arg
CCT
[ENA]
¡û
>W1710207378
FCNY02000002
Betaproteobacteria
Caballeronia cordobensis [FCNY]
64870
64944
+
Arg
CCT
[ENA]
¡û
>W1710207480
FCOC02000001
Betaproteobacteria
Caballeronia sordidicola [FCOC]
604908
604982
+
Arg
CCT
[ENA]
¡û
>W1710207558
FCOK02000063
Betaproteobacteria
Caballeronia udeis [FCOK]
54329
54403
+
Arg
CCT
[ENA]
¡û
>W1710207653
FCON02000017
Betaproteobacteria
Caballeronia choica [FCON]
8142
8068
-
Arg
CCT
[ENA]
¡û
>W1710511391
FMYQ01000014
Betaproteobacteria
Paraburkholderia lycopersici TNe-862 [FMYQ]
153437
153511
+
Arg
CCT
[ENA]
¡û
>W1710535636
FNSR01000001
Betaproteobacteria
Paraburkholderia caballeronis [FNSR]
3075904
3075978
+
Arg
CCT
[ENA]
¡û
>W1710542894
FNZM01000011
Betaproteobacteria
Paraburkholderia tropica [FNZM]
171438
171364
-
Arg
CCT
[ENA]
¡û
>W1710543900
FOAJ01000029
Betaproteobacteria
Paraburkholderia caballeronis [FOAJ]
10463
10537
+
Arg
CCT
[ENA]
¡û
>W1710604321
FUZW01000002
Betaproteobacteria
Paraburkholderia hospita BT03 [FUZW]
1364347
1364421
+
Arg
CCT
[ENA]
¡û
>W1710604416
FUZX01000001
Betaproteobacteria
Paraburkholderia hospita YR277 [FUZX]
1657360
1657286
-
Arg
CCT
[ENA]
¡û
>W1710640557
JRTU01000006
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRTU]
36266
36340
+
Arg
CCT
[ENA]
¡û
>W1710641723
JRZC01000103
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRZC]
44026
43952
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK