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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339811 (118 seq.)
>W1711210226
LXIA01000017
Bacillota
Lentilactobacillus parabuchneri [LXIA]
960
1033
+
Gln
TTG
[ENA]
¡û
>W1711224713
LXUG01000011
Bacillota
Lentilactobacillus parabuchneri [LXUG]
725874
725801
-
Gln
TTG
[ENA]
¡û
>W1711236367
LYDQ01000011
Bacillota
Lentilactobacillus parabuchneri [LYDQ]
675161
675088
-
Gln
TTG
[ENA]
¡û
>W131241982
BASH01000012
Bacillota
Lentilactobacillus otakiensis JCM 15040 [BASH]
758
831
+
Gln
TTG
[ENA]
¡û
>W1711438178
MIQE01000011
Bacillota
Lentilactobacillus sunkii [MIQE]
449
522
+
Gln
TTG
[ENA]
¡û
>W1711685925
MSAS01000002
Bacillota
Lentilactobacillus parabuchneri [MSAS]
64663
64590
-
Gln
TTG
[ENA]
¡û
>W1711685983
MSAT01000002
Bacillota
Lentilactobacillus parabuchneri [MSAT]
29500
29427
-
Gln
TTG
[ENA]
¡û
>W1711686082
MSAU01000028
Bacillota
Lentilactobacillus parabuchneri [MSAU]
285152
285079
-
Gln
TTG
[ENA]
¡û
>W1711686098
MSAV01000001
Bacillota
Lentilactobacillus parabuchneri [MSAV]
93719
93646
-
Gln
TTG
[ENA]
¡û
>W1711686157
MSAW01000004
Bacillota
Lentilactobacillus parabuchneri [MSAW]
18296
18223
-
Gln
TTG
[ENA]
¡û
>W1711686253
MSAX01000022
Bacillota
Lentilactobacillus parabuchneri [MSAX]
689575
689502
-
Gln
TTG
[ENA]
¡û
>W1711686272
MSAY01000003
Bacillota
Lentilactobacillus parabuchneri [MSAY]
63307
63234
-
Gln
TTG
[ENA]
¡û
>W1711686330
MSAZ01000002
Bacillota
Lentilactobacillus parabuchneri [MSAZ]
63307
63234
-
Gln
TTG
[ENA]
¡û
>W1711686388
MSBA01000002
Bacillota
Lentilactobacillus parabuchneri [MSBA]
63306
63233
-
Gln
TTG
[ENA]
¡û
>W1711686446
MSBB01000003
Bacillota
Lentilactobacillus parabuchneri [MSBB]
63307
63234
-
Gln
TTG
[ENA]
¡û
>W1711686542
MSBC01000021
Bacillota
Lentilactobacillus parabuchneri [MSBC]
689575
689502
-
Gln
TTG
[ENA]
¡û
>W1711686561
MSBD01000002
Bacillota
Lentilactobacillus parabuchneri [MSBD]
63894
63821
-
Gln
TTG
[ENA]
¡û
>W1711686618
MSBE01000001
Bacillota
Lentilactobacillus parabuchneri [MSBE]
94656
94583
-
Gln
TTG
[ENA]
¡û
>W1711686680
MSBF01000002
Bacillota
Lentilactobacillus parabuchneri [MSBF]
23405
23332
-
Gln
TTG
[ENA]
¡û
>W1711686757
MSBG01000015
Bacillota
Lentilactobacillus parabuchneri [MSBG]
32553
32626
+
Gln
TTG
[ENA]
¡û
>W1711686794
MSBH01000003
Bacillota
Lentilactobacillus parabuchneri [MSBH]
23405
23332
-
Gln
TTG
[ENA]
¡û
>W1711686890
MSBI01000019
Bacillota
Lentilactobacillus parabuchneri [MSBI]
277413
277340
-
Gln
TTG
[ENA]
¡û
>C171034126
CP014912
Bacillota
Secundilactobacillus paracollinoides TMW 1.1979 [CP014912]
3066725
3066652
-
Gln
TTG
-
¡û
>C171034203
CP014915
Bacillota
Secundilactobacillus paracollinoides TMW 1.1994 [CP014915]
1678099
1678026
-
Gln
TTG
-
¡û
>C171034257
CP014924
Bacillota
Secundilactobacillus paracollinoides TMW 1.1995 [CP014924]
3265259
3265186
-
Gln
TTG
-
¡û
>C171084061
CP018796
Bacillota
Lentilactobacillus parabuchneri FAM21731 [CP018796]
108926
108853
-
Gln
TTG
-
¡û
>WENV180477975
OBZA01000002
[OBZA] human gut metagenome; faeces
320238
320165
-
Gln
TTG
[ENA]
¢þ
>W141226603
BAKI01000049
Bacillota
Lentilactobacillus farraginis JCM 14108 [BAKI]
1024
1097
+
Gln
TTG
[ENA]
¡û
>W141237665
BBJM01000021
Bacillota
Secundilactobacillus oryzae [BBJM]
38934
38861
-
Gln
TTG
[ENA]
¡û
>W09122548
ACGG01000115
Bacillota
Lentilactobacillus hilgardii subsp. gravesensis ATCC 27305 [ACGG]
754
827
+
Gln
TTG
[ENA]
¡û
>W09122605
ACGH01000126
Bacillota
Lentilactobacillus buchneri ATCC 11577 [ACGH]
756
829
+
Gln
TTG
[ENA]
¡û
>W09122966
ACGP01000176
Bacillota
Lentilactobacillus hilgardii ATCC 8290 [ACGP]
756
829
+
Gln
TTG
[ENA]
¡û
>W1910177193
BJDO01000061
Bacillota
Secundilactobacillus hailunensis 887-11 [BJDO]
942
1015
+
Gln
TTG
[ENA]
¡û
>W1910870915
NCWS01000060
Bacillota
Lentilactobacillus kefiri OG2 [NCWS]
913
986
+
Gln
TTG
[ENA]
¡û
>W1910871361
NCXA01000094
Bacillota
Lentilactobacillus parakefiri KR [NCXA]
597
524
-
Gln
TTG
[ENA]
¡û
>W1910871504
NCXD01000057
Bacillota
Lentilactobacillus kefiri KR [NCXD]
913
986
+
Gln
TTG
[ENA]
¡û
>W1910871758
NCXI01000193
Bacillota
Lentilactobacillus parakefiri OG2 [NCXI]
225
298
+
Gln
TTG
[ENA]
¡û
>W1910872063
NDFJ01000060
Bacillota
Lentilactobacillus kefiri Olga [NDFJ]
913
986
+
Gln
TTG
[ENA]
¡û
>W1911551317
OVSN01000007
Bacillota
Lentilactobacillus raoultii Marseille-P4006 [OVSN]
1013
1086
+
Gln
TTG
[ENA]
¡û
>W1911631866
PUFJ01000036
Bacillota
Secundilactobacillus silagei JCM 19001 DSM 27022 [PUFJ]
159421
159348
-
Gln
TTG
[ENA]
¡û
>W1911631944
PUFL01000035
Bacillota
Lentilactobacillus parakefiri DSM 10551 [PUFL]
3994
4067
+
Gln
TTG
[ENA]
¡û
>W1911632129
PUFO01000081
Bacillota
Secundilactobacillus malefermentans ATCC 49373 [PUFO]
1859
1786
-
Gln
TTG
[ENA]
¡û
>W1911632168
PUFP01000022
Bacillota
Lentilactobacillus buchneri ATCC 4005 [PUFP]
961
1034
+
Gln
TTG
[ENA]
¡û
>W1911632302
PUFR01000079
Bacillota
Lentilactobacillus hilgardii ATCC 8290 [PUFR]
6976
6903
-
Gln
TTG
[ENA]
¡û
>W1810586564
QFFL01000001
Bacillota
Lentilactobacillus kefiri SGL 13 [QFFL]
2302026
2302099
+
Gln
TTG
[ENA]
¡û
>C11112236
CP002652
Bacillota
Lentilactobacillus buchneri NRRL B-30929 [CP002652]
835430
835503
+
Gln
TTG
[Ensembl]
¡û
>W11184778
BACN01000033
Bacillota
Secundilactobacillus malefermentans KCTC 3548 [BACN]
868
941
+
Gln
TTG
[ENA]
¡û
>W121009530
AGEY01000185
Bacillota
Lentilactobacillus parafarraginis F0439 [AGEY]
8411
8484
+
Gln
TTG
[ENA]
¡û
>W121016908
AGRJ01000165
Bacillota
Lentilactobacillus kisonensis F0435 [AGRJ]
200
273
+
Gln
TTG
[ENA]
¡û
>W1610031300
AYYR01000094
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [AYYR]
47512
47439
-
Gln
TTG
[ENA]
¡û
>W1610031479
AYYV01000089
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
801
874
+
Gln
TTG
[ENA]
¡û
>W1610032308
AYZM01000180
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [AYZM]
35121
35048
-
Gln
TTG
[ENA]
¡û
>W1610033807
AZDF01000062
Bacillota
Lentilactobacillus hilgardii DSM 20176 = ATCC 8290 [AZDF]
785
858
+
Gln
TTG
[ENA]
¡û
>W1610034144
AZDM01000064
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
424
497
+
Gln
TTG
[ENA]
¡û
>W1610034853
AZEA01000024
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
788
861
+
Gln
TTG
[ENA]
¡û
>W1610034878
AZEB01000025
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
38358
38285
-
Gln
TTG
[ENA]
¡û
>W1610034966
AZED01000014
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
814
887
+
Gln
TTG
[ENA]
¡û
>W1610035020
AZEE01000028
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [AZEE]
861
934
+
Gln
TTG
[ENA]
¡û
>W1610035233
AZEI01000076
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [AZEI]
532973
532900
-
Gln
TTG
[ENA]
¡û
>W1610035500
AZEN01000377
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
8121
8048
-
Gln
TTG
[ENA]
¡û
>W1610036025
AZEY01000102
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
6228
6155
-
Gln
TTG
[ENA]
¡û
>W1610036245
AZFD01000188
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [AZFD]
845
918
+
Gln
TTG
[ENA]
¡û
>W1610037350
AZFY01000156
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
16157
16084
-
Gln
TTG
[ENA]
¡û
>W1610037397
AZFZ01000093
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
5168
5095
-
Gln
TTG
[ENA]
¡û
>W1610037904
AZGJ01000117
Bacillota
Secundilactobacillus malefermentans DSM 5705 = KCTC 3548 [AZGJ]
828
901
+
Gln
TTG
[ENA]
¡û
>W1610037921
AZGK01000001
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [AZGK]
785
858
+
Gln
TTG
[ENA]
¡û
>W1610043917
BBAD01000102
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [BBAD]
835
908
+
Gln
TTG
[ENA]
¡û
>W1610044097
BBAG01000155
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [BBAG]
814
887
+
Gln
TTG
[ENA]
¡û
>W1610044639
BBAR01000170
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
784
711
-
Gln
TTG
[ENA]
¡û
>W1610044710
BBAT01000001
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
684571
684498
-
Gln
TTG
[ENA]
¡û
>W1610044765
BBAU01000016
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [BBAU]
757
830
+
Gln
TTG
[ENA]
¡û
>W1610044819
BBAV01000013
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [BBAV]
750
823
+
Gln
TTG
[ENA]
¡û
>W1610045794
BBBV01000065
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
758
831
+
Gln
TTG
[ENA]
¡û
>W1610049060
BBEQ01000042
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [BBEQ]
813
886
+
Gln
TTG
[ENA]
¡û
>W1610049906
BBFJ01000002
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [BBFJ]
816
889
+
Gln
TTG
[ENA]
¡û
>W1610050028
BBFL01000003
Bacillota
Secundilactobacillus silagei JCM 19001 [BBFL]
158003
157930
-
Gln
TTG
[ENA]
¡û
>W1610073226
BCVT01000089
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [BCVT]
894
821
-
Gln
TTG
[ENA]
¡û
>C131001711
CP003043
Bacillota
Lentilactobacillus buchneri subsp. silagei CD034 [CP003043]
860039
860112
+
Gln
TTG
[Ensembl]
¡û
>W1610528588
JQBJ01000053
Bacillota
Lentilactobacillus parabuchneri [JQBJ]
50715
50642
-
Gln
TTG
[ENA]
¡û
>W1610550916
JYDC01000048
Bacillota
Secundilactobacillus collinoides [JYDC]
43787
43714
-
Gln
TTG
[ENA]
¡û
>W1610997952
LXIA01000017
Bacillota
Lentilactobacillus parabuchneri [LXIA]
960
1033
+
Gln
TTG
[ENA]
¡û
>W1611008677
LXUG01000011
Bacillota
Lentilactobacillus parabuchneri [LXUG]
725874
725801
-
Gln
TTG
[ENA]
¡û
>W1611014512
LYDQ01000011
Bacillota
Lentilactobacillus parabuchneri [LYDQ]
675161
675088
-
Gln
TTG
[ENA]
¡û
>W1710028252
AYYR01000094
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [AYYR]
47512
47439
-
Gln
TTG
[ENA]
¡û
>W1710028406
AYYV01000089
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
801
874
+
Gln
TTG
[ENA]
¡û
>W1710029235
AYZM01000180
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [AYZM]
35121
35048
-
Gln
TTG
[ENA]
¡û
>W1710031271
AZDM01000064
Bacillota
Lentilactobacillus buchneri DSM 20057 [AZDM]
424
497
+
Gln
TTG
[ENA]
¡û
>W1710031980
AZEA01000024
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
788
861
+
Gln
TTG
[ENA]
¡û
>W1710032005
AZEB01000025
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
38358
38285
-
Gln
TTG
[ENA]
¡û
>W1710032093
AZED01000014
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
814
887
+
Gln
TTG
[ENA]
¡û
>W1710032147
AZEE01000028
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [AZEE]
861
934
+
Gln
TTG
[ENA]
¡û
>W1710032360
AZEI01000076
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [AZEI]
532973
532900
-
Gln
TTG
[ENA]
¡û
>W1710032539
AZEN01000377
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
8121
8048
-
Gln
TTG
[ENA]
¡û
>W1710033064
AZEY01000102
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
6228
6155
-
Gln
TTG
[ENA]
¡û
>W1710033284
AZFD01000188
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [AZFD]
845
918
+
Gln
TTG
[ENA]
¡û
>W1710034389
AZFY01000156
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
16157
16084
-
Gln
TTG
[ENA]
¡û
>W1710034436
AZFZ01000093
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
5168
5095
-
Gln
TTG
[ENA]
¡û
>W1710034943
AZGJ01000117
Bacillota
Secundilactobacillus malefermentans DSM 5705 = KCTC 3548 [AZGJ]
828
901
+
Gln
TTG
[ENA]
¡û
>W1710034960
AZGK01000001
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [AZGK]
785
858
+
Gln
TTG
[ENA]
¡û
>W1710041077
BBAD01000102
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [BBAD]
835
908
+
Gln
TTG
[ENA]
¡û
>W1710041257
BBAG01000155
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [BBAG]
814
887
+
Gln
TTG
[ENA]
¡û
>W1710041737
BBAR01000170
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
784
711
-
Gln
TTG
[ENA]
¡û
>W1710041808
BBAT01000001
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
684571
684498
-
Gln
TTG
[ENA]
¡û
>W1710041863
BBAU01000016
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [BBAU]
757
830
+
Gln
TTG
[ENA]
¡û
>W1710041917
BBAV01000013
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [BBAV]
750
823
+
Gln
TTG
[ENA]
¡û
>W1710042635
BBBV01000065
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
758
831
+
Gln
TTG
[ENA]
¡û
>W1710045532
BBEQ01000042
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [BBEQ]
813
886
+
Gln
TTG
[ENA]
¡û
>W1710046305
BBFJ01000002
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [BBFJ]
816
889
+
Gln
TTG
[ENA]
¡û
>W1710046427
BBFL01000003
Bacillota
Secundilactobacillus silagei JCM 19001 [BBFL]
158003
157930
-
Gln
TTG
[ENA]
¡û
>W1710058475
BCMF01000002
Bacillota
Secundilactobacillus mixtipabuli [BCMF]
297162
297089
-
Gln
TTG
[ENA]
¡û
>W1710058554
BCMG01000006
Bacillota
Secundilactobacillus silagei [BCMG]
158064
157991
-
Gln
TTG
[ENA]
¡û
>W1710058633
BCMH01000029
Bacillota
Secundilactobacillus pentosiphilus IWT140 [BCMH]
9298
9225
-
Gln
TTG
[ENA]
¡û
>W1710058686
BCMI01000015
Bacillota
Secundilactobacillus pentosiphilus IWT25 [BCMI]
935
1008
+
Gln
TTG
[ENA]
¡û
>W1710058738
BCMJ01000013
Bacillota
Secundilactobacillus silagincola IWT5 [BCMJ]
1150
1223
+
Gln
TTG
[ENA]
¡û
>W1710070344
BCVT01000089
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [BCVT]
894
821
-
Gln
TTG
[ENA]
¡û
>W1710081746
BDGB01000074
Bacillota
Lentilactobacillus parakefiri [BDGB]
1651
1724
+
Gln
TTG
[ENA]
¡û
>W1710630178
JQBJ01000053
Bacillota
Lentilactobacillus parabuchneri [JQBJ]
50715
50642
-
Gln
TTG
[ENA]
¡û
>W1710661189
JYDC01000048
Bacillota
Secundilactobacillus collinoides [JYDC]
43787
43714
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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