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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339836 (17 seq.)
>A171000096
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
937100
937173
+
Asp
GTC
-
¡û
>A171000905
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1317654
1317727
+
Asp
GTC
-
¡û
>A171001815
CP002278
Euryarchaeota
Methanothermus fervidus DSM 2088 [CP002278]
638783
638709
-
Asp
GTC
-
¡û
>A171004004
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2131737
2131664
-
Asp
GTC
-
¡û
>A171007304
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
224577
224650
+
Asp
GTC
-
¡û
>A171007358
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1604047
1604120
+
Asp
GTC
-
¡û
>A171007389
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
261080
261153
+
Asp
GTC
-
¡û
>A171007708
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1325262
1325335
+
Asp
GTC
-
¡û
>At1659
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
954350
954421
+
Asp
GTC
[Ensembl]
¡û
>WENV170675893
LDZQ01001192
[LDZQ] terrestrial metagenome; oil reservoir sample I2
3486
3560
+
Asp
GTC
[ENA]
¢þ
>WENV170676690
LDZS01001915
[LDZS] terrestrial metagenome; oil reservoir sample K3
4121
4048
-
Asp
GTC
[ENA]
¢þ
>WENV170677303
LDZT01004896
[LDZT] terrestrial metagenome; oil reservoir sample SB1
14250
14177
-
Asp
GTC
[ENA]
¢þ
>W1911690457
QLOE01000003
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
20832
20757
-
Asp
GTC
[ENA]
¡û
>W1911722798
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
287526
287453
-
Asp
GTC
[ENA]
¡û
>W1610049139
BBES01000002
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
207802
207875
+
Asp
GTC
[ENA]
¡û
>W1610612472
LGEU01000006
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
3486
3560
+
Asp
GTC
[ENA]
¡û
>W1610613857
LGGL01000003
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
14250
14177
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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