This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339841 (13 seq.)
>A171002047
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
421574
421501
-
Gln
TTG
-
¡û
>A171004009
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
851701
851628
-
Gln
TTG
-
¡û
>A171007327
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1591026
1590953
-
Gln
TTG
-
¡û
>A171007376
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
801936
801863
-
Gln
TTG
-
¡û
>A171007410
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
1948041
1947968
-
Gln
TTG
-
¡û
>A171007674
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
1974928
1974856
-
Gln
TTG
-
¡û
>WENV181230234
OFEK01000476
[OFEK] activated sludge metagenome; Anaerobic digester
4355
4428
+
Gln
TTG
[ENA]
¢þ
>WENV170671622
LAHU01108229
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
306
233
-
Gln
TTG
[ENA]
¢þ
>WENV170677313
LDZT01004916
[LDZT] terrestrial metagenome; oil reservoir sample SB1
16583
16510
-
Gln
TTG
[ENA]
¢þ
>WENV170678219
LDZT01012352
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2545
2617
+
Gln
TTG
[ENA]
¢þ
>WENV170972598
MTKX01037864
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2101
2028
-
Gln
TTG
[ENA]
¢þ
>W1610049169
BBES01000020
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
5742
5815
+
Gln
TTG
[ENA]
¡û
>W1610613867
LGGL01000023
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
16583
16510
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK