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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339857 (87 seq.)
>W131054705
ANAY01000021
Actinomycetota
Nocardiopsis kunsanensis DSM 44524 [ANAY]
5512
5438
-
Gln
CTG
[ENA]
¡û
>W131055062
ANBE01000059
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
11256
11330
+
Gln
CTG
[ENA]
¡û
>W131055095
ANBF01000153
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
18700
18628
-
Gln
CTG
[ENA]
¡û
>W1711345468
MCNU01000270
Actinomycetota
Streptomyces fradiae [MCNU]
5905
5979
+
Gln
CTG
[ENA]
¡û
>W1711491917
MKJY01000601
Actinomycetota
Actinomadura sp. CNU-125 [MKJY]
4414
4342
-
Gln
CTG
[ENA]
¡û
>W1711492092
MKKC01000098
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
171818
171746
-
Gln
CTG
[ENA]
¡û
>W1711739007
MUBN01000099
Actinomycetota
Streptomyces antimycoticus castelarensis [MUBN]
26934
27008
+
Gln
CTG
[ENA]
¡û
>C171070715
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
1006310
1006382
+
Gln
CTG
-
¡û
>W131011188
AICY01000672
Actinomycetota
Saccharomonospora saliphila YIM 90502 [AICY]
8171
8099
-
Gln
CTG
[ENA]
¡û
>W131179379
ARMI01000055
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
161194
161266
+
Gln
CTG
[ENA]
¡û
>W131186143
ARVW01000001
Actinomycetota
Amycolatopsis nigrescens CSC17Ta-90 [ARVW]
5596643
5596715
+
Gln
CTG
[ENA]
¡û
>W131217134
ATWL01000011
Actinomycetota
Ruania albidiflava DSM 18029 [ATWL]
28691
28619
-
Gln
CTG
[ENA]
¡û
>W131222167
AUBB01000006
Actinomycetota
Pseudonocardia spinosispora DSM 44797 [AUBB]
433516
433444
-
Gln
CTG
[ENA]
¡û
>C021632
AM420293
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [AM420293]
6892450
6892376
-
Gln
CTG
[Ensembl]
¡û
>W141094393
AVCN01000035
Actinomycetota
Saccharopolyspora erythraea D [AVCN]
31965
32039
+
Gln
CTG
[ENA]
¡û
>W141140059
AWOO02000025
Actinomycetota
Actinomadura madurae LIID-AJ290 [AWOO]
81794
81722
-
Gln
CTG
[ENA]
¡û
>WENV181641948
OGNF01038219
[OGNF] metagenome; Human gut stool
110
182
+
Gln
CTG
[ENA]
¢þ
>WENV183707811
PDWI01010787
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10267
10195
-
Gln
CTG
[ENA]
¢þ
>WENV170648194
JRHI01000030
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
61114
61188
+
Gln
CTG
[ENA]
¢þ
>C181072222
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
5046267
5046195
-
Gln
CTG
-
¡û
>C181077637
CP023202
Actinomycetota
Streptomyces xinghaiensis S187 [CP023202]
1996548
1996476
-
Gln
CTG
-
¡û
>C191089036
CP032402
Actinomycetota
Thermomonospora amylolytica YIM 77502 [CP032402]
3785526
3785598
+
Gln
CTG
-
¡û
>C191125304
CP034438
Actinomycetota
Flaviflexus salsibiostraticola KCTC 33148 [CP034438]
885924
885852
-
Gln
CTG
-
¡û
>C191151521
CP036455
Actinomycetota
Streptomonospora litoralis M2 [CP036455]
1347770
1347844
+
Gln
CTG
-
¡û
>C191174141
CP040020
Actinomycetota
Brevibacterium sp. CS2 [CP040020]
3102939
3102867
-
Gln
CTG
-
¡û
>C191212892
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
5137158
5137230
+
Gln
CTG
-
¡û
>W141726227
JNAD01000119
Actinomycetota
Streptomyces xinghaiensis fradiae [JNAD]
5932
6006
+
Gln
CTG
[ENA]
¡û
>W141768670
JOFJ01000003
Actinomycetota
Spirillospora albida [JOFJ]
183511
183439
-
Gln
CTG
[ENA]
¡û
>W141772983
JOID01000012
Actinomycetota
Streptomyces albus subsp. albus [JOID]
163487
163413
-
Gln
CTG
[ENA]
¡û
>W1910236989
FPJH01000007
Actinomycetota
Arcanobacterium urinimassiliense Marseille-P3248 [FPJH]
118560
118632
+
Gln
CTG
[ENA]
¡û
>W1910331195
FSLI01000011
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
220161
220089
-
Gln
CTG
[ENA]
¡û
>W1910442413
FWFF01000017
Actinomycetota
Brevibacterium yomogidense B Co 03.10 [FWFF]
472762
472834
+
Gln
CTG
[ENA]
¡û
>W1910498658
FXWZ01000003
Actinomycetota
Brevibacterium ihuae CV3 [FXWZ]
174068
173996
-
Gln
CTG
[ENA]
¡û
>W1910500364
FXZF01000004
Actinomycetota
Brevibacterium sp. Mu109 [FXZF]
142285
142213
-
Gln
CTG
[ENA]
¡û
>W1910547218
FZNP01000006
Actinomycetota
Actinomadura mexicana DSM 44485 [FZNP]
416246
416174
-
Gln
CTG
[ENA]
¡û
>W1910548641
FZOR01000003
Actinomycetota
Actinomadura meyerae DSM 44715 [FZOR]
220664
220592
-
Gln
CTG
[ENA]
¡û
>W1910657710
MASW01000002
Actinomycetota
Prauserella muralis DSM 45305 [MASW]
216422
216494
+
Gln
CTG
[ENA]
¡û
>W1911679578
QHKJ01000099
Actinomycetota
Streptomyces sp. WAC 00631 [QHKJ]
7142
7214
+
Gln
CTG
[ENA]
¡û
>W1810046865
NYMS01000058
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
108443
108371
-
Gln
CTG
[ENA]
¡û
>W1810046868
NYMS01000060
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
25278
25350
+
Gln
CTG
[ENA]
¡û
>W1810057622
PDIX01000006
Actinomycetota
Streptomyces sp. Ru87 [PDIX]
15696
15768
+
Gln
CTG
[ENA]
¡û
>W1810254900
PQHZ01000002
Actinomycetota
Amycolatopsis palatopharyngis DSM 44832 [PQHZ]
146079
146151
+
Gln
CTG
[ENA]
¡û
>W1810254904
PQHZ01000002
Actinomycetota
Amycolatopsis palatopharyngis DSM 44832 [PQHZ]
131368
131296
-
Gln
CTG
[ENA]
¡û
>W1810325965
PUET01000002
Actinomycetota
Streptomyces xinghaiensis OlgR2-7A [PUET]
560808
560880
+
Gln
CTG
[ENA]
¡û
>W1810400337
PYGA01000014
Actinomycetota
Murinocardiopsis flavida DSM 45312 [PYGA]
10565
10637
+
Gln
CTG
[ENA]
¡û
>W1810400525
PYGE01000003
Actinomycetota
Haloactinopolyspora alba DSM 45211 [PYGE]
132903
132831
-
Gln
CTG
[ENA]
¡û
>W1810570449
QEIM01000015
Actinomycetota
Marinitenerispora sediminis TPS83 [QEIM]
37473
37401
-
Gln
CTG
[ENA]
¡û
>W1810570498
QEIN01000005
Actinomycetota
Marinitenerispora sediminis TPS81 [QEIN]
37473
37401
-
Gln
CTG
[ENA]
¡û
>W1810570569
QEIO01000034
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
5163
5235
+
Gln
CTG
[ENA]
¡û
>W1810584612
QFBD01000002
Actinomycetota
Streptomyces xinghaiensis OlgR [QFBD]
176178
176106
-
Gln
CTG
[ENA]
¡û
>W1810698102
QLYX01000013
Actinomycetota
Actinomadura craniellae LHW63021 [QLYX]
82296
82368
+
Gln
CTG
[ENA]
¡û
>W1810861267
QTTT01000001
Actinomycetota
Thermomonospora umbrina DSM 43927 [QTTT]
4953528
4953600
+
Gln
CTG
[ENA]
¡û
>W1810913815
QVNQ01000003
Actinomycetota
Actinomadura spongiicola LHW52907 [QVNQ]
819894
819822
-
Gln
CTG
[ENA]
¡û
>W10100206
ABFV01000013
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
114675
114749
+
Gln
CTG
[ENA]
¡û
>W10118422
ADUJ01000849
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
2014
2086
+
Gln
CTG
[ENA]
¡û
>W10127855
AEET01000024
Actinomycetota
Mobiluncus mulieris ATCC 35239 [AEET]
60577
60649
+
Gln
CTG
[ENA]
¡û
>W1510456314
CPWZ01000013
Actinomycetota
Mycobacterium tuberculosis 401416 [CPWZ]
1507
1579
+
Gln
CTG
[ENA]
¡û
>W11100206
ABFV01000013
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
114675
114749
+
Gln
CTG
[ENA]
¡û
>C11111581
CP002810
Actinomycetota
Isoptericola variabilis 225 [CP002810]
2307127
2307055
-
Gln
CTG
[Ensembl]
¡û
>W1511352734
JROO01000006
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
282149
282075
-
Gln
CTG
[ENA]
¡û
>W11123497
ADUJ01000849
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
2014
2086
+
Gln
CTG
[ENA]
¡û
>W11135343
AEET01000024
Actinomycetota
Mobiluncus mulieris ATCC 35239 [AEET]
60577
60649
+
Gln
CTG
[ENA]
¡û
>W1511705789
LGSP01000012
Actinomycetota
Streptomyces fradiae olg1-1 [LGSP]
5838
5912
+
Gln
CTG
[ENA]
¡û
>W11172107
AFRP01001952
Actinomycetota
Streptomyces xinghaiensis S187 [AFRP]
12939
12865
-
Gln
CTG
[ENA]
¡û
>W1610067439
BCQP01000001
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
64079
64151
+
Gln
CTG
[ENA]
¡û
>W1610067508
BCQQ01000011
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
38979
38907
-
Gln
CTG
[ENA]
¡û
>W1610067583
BCQR01000067
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
53938
53866
-
Gln
CTG
[ENA]
¡û
>W1610067626
BCQR01000316
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
1235
1163
-
Gln
CTG
[ENA]
¡û
>W1610067644
BCQS01000005
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
864663
864591
-
Gln
CTG
[ENA]
¡û
>W1610067712
BCQT01000014
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
68688
68760
+
Gln
CTG
[ENA]
¡û
>W1610068736
BCRO01000039
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
146587
146659
+
Gln
CTG
[ENA]
¡û
>W1710018519
ATNL01000013
Actinomycetota
Cellulosimicrobium cellulans F16 [ATNL]
86806
86880
+
Gln
CTG
[ENA]
¡û
>W1710055760
BCAN01000147
Actinomycetota
Streptomyces hygroscopicus sporocinereus [BCAN]
5610
5684
+
Gln
CTG
[ENA]
¡û
>W1710064812
BCQP01000001
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
64079
64151
+
Gln
CTG
[ENA]
¡û
>W1710064881
BCQQ01000011
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
38979
38907
-
Gln
CTG
[ENA]
¡û
>W1710064956
BCQR01000067
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
53938
53866
-
Gln
CTG
[ENA]
¡û
>W1710064999
BCQR01000316
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
1235
1163
-
Gln
CTG
[ENA]
¡û
>W1710065017
BCQS01000005
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
864663
864591
-
Gln
CTG
[ENA]
¡û
>W1710065085
BCQT01000014
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
68688
68760
+
Gln
CTG
[ENA]
¡û
>W1710066109
BCRO01000039
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
146587
146659
+
Gln
CTG
[ENA]
¡û
>W1710533080
FNQV01000011
Actinomycetota
Bowdeniella nasicola [FNQV]
75474
75400
-
Gln
CTG
[ENA]
¡û
>W1710544714
FOAZ01000025
Actinomycetota
Streptacidiphilus jiangxiensis [FOAZ]
34805
34877
+
Gln
CTG
[ENA]
¡û
>W1710556502
FOKG01000005
Actinomycetota
Amycolatopsis marina [FOKG]
61710
61638
-
Gln
CTG
[ENA]
¡û
>W1710570157
FOUY01000023
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
70096
70024
-
Gln
CTG
[ENA]
¡û
>W1710570627
FOVH01000001
Actinomycetota
Actinomadura madurae [FOVH]
72587
72659
+
Gln
CTG
[ENA]
¡û
>W1710572696
FOWW01000002
Actinomycetota
Amycolatopsis arida deserti [FOWW]
24330
24258
-
Gln
CTG
[ENA]
¡û
>W1710600715
FUWS01000009
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
195443
195517
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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