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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.33988 (83 seq.)
>W1710917408
LNVY01000015
Alphaproteobacteria
Tritonibacter mobilis [LNVY]
232028
232117
+
Ser
CGA
[ENA]
¡û
>W1710917568
LNWD01000001
Alphaproteobacteria
Tritonibacter mobilis [LNWD]
441755
441844
+
Ser
CGA
[ENA]
¡û
>W1710917618
LNWE01000003
Alphaproteobacteria
Tritonibacter mobilis [LNWE]
136511
136600
+
Ser
CGA
[ENA]
¡û
>W1710917869
LNWJ01000014
Alphaproteobacteria
Tritonibacter mobilis [LNWJ]
371746
371657
-
Ser
CGA
[ENA]
¡û
>W1710917904
LNWK01000003
Alphaproteobacteria
Tritonibacter mobilis [LNWK]
162714
162625
-
Ser
CGA
[ENA]
¡û
>W1710917940
LNWL01000003
Alphaproteobacteria
Tritonibacter mobilis [LNWL]
441836
441925
+
Ser
CGA
[ENA]
¡û
>W1710918099
LNWO01000009
Alphaproteobacteria
Tritonibacter mobilis [LNWO]
369558
369469
-
Ser
CGA
[ENA]
¡û
>W1710918185
LNWQ01000001
Alphaproteobacteria
Tritonibacter mobilis [LNWQ]
431105
431016
-
Ser
CGA
[ENA]
¡û
>W1710918225
LNWR01000002
Alphaproteobacteria
Tritonibacter mobilis [LNWR]
572153
572242
+
Ser
CGA
[ENA]
¡û
>W1710918285
LNWS01000005
Alphaproteobacteria
Tritonibacter mobilis [LNWS]
577329
577418
+
Ser
CGA
[ENA]
¡û
>W1710918483
LNWW01000004
Alphaproteobacteria
Tritonibacter mobilis [LNWW]
679253
679342
+
Ser
CGA
[ENA]
¡û
>W1710918528
LNWX01000012
Alphaproteobacteria
Tritonibacter mobilis [LNWX]
390116
390205
+
Ser
CGA
[ENA]
¡û
>W1710918634
LNWZ01000005
Alphaproteobacteria
Tritonibacter mobilis [LNWZ]
214295
214206
-
Ser
CGA
[ENA]
¡û
>W1710918659
LNXA01000001
Alphaproteobacteria
Tritonibacter mobilis [LNXA]
136511
136600
+
Ser
CGA
[ENA]
¡û
>W1710918715
LNXB01000001
Alphaproteobacteria
Tritonibacter mobilis [LNXB]
891590
891679
+
Ser
CGA
[ENA]
¡û
>W1710918766
LNXC01000004
Alphaproteobacteria
Tritonibacter mobilis [LNXC]
136511
136600
+
Ser
CGA
[ENA]
¡û
>W1710918861
LNXE01000005
Alphaproteobacteria
Tritonibacter mobilis [LNXE]
195256
195167
-
Ser
CGA
[ENA]
¡û
>W1710918961
LNXG01000004
Alphaproteobacteria
Tritonibacter mobilis [LNXG]
849181
849270
+
Ser
CGA
[ENA]
¡û
>W1710919010
LNXH01000005
Alphaproteobacteria
Tritonibacter mobilis [LNXH]
863468
863557
+
Ser
CGA
[ENA]
¡û
>W1710919047
LNXI01000003
Alphaproteobacteria
Tritonibacter mobilis [LNXI]
441755
441844
+
Ser
CGA
[ENA]
¡û
>W1710919094
LNXJ01000002
Alphaproteobacteria
Tritonibacter mobilis [LNXJ]
441755
441844
+
Ser
CGA
[ENA]
¡û
>W1710919153
LNXK01000005
Alphaproteobacteria
Tritonibacter mobilis [LNXK]
431104
431015
-
Ser
CGA
[ENA]
¡û
>W1710919491
LNXR01000005
Alphaproteobacteria
Tritonibacter mobilis [LNXR]
538659
538748
+
Ser
CGA
[ENA]
¡û
>C022641
CP000377
Alphaproteobacteria
Ruegeria sp. TM1040 [CP000377]
1289737
1289648
-
Ser
CGA
[Ensembl]
¡û
>WENV180585208
OCOK01036300
[OCOK] marine metagenome; ENVO:00002010
178
89
-
Ser
CGA
[ENA]
¡û
>WENV170024132
BCQL01022810
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1015
926
-
Ser
CGA
[ENA]
¡û
>W09101506
AAFG02000001
Alphaproteobacteria
Ruegeria sp. TM1040 TM1040 [AAFG]
540030
540119
+
Ser
CGA
[ENA]
¡û
>C191190050
LR027553
Alphaproteobacteria
Tritonibacter mobilis [LR027553, LR027554]
1686629
1686718
+
Ser
CGA
-
¡û
>W1810044956
LKAI01000003
Alphaproteobacteria
Tritonibacter mobilis 45A6 [LKAI]
236903
236814
-
Ser
CGA
[ENA]
¡û
>W1810658784
QJJO01000002
Alphaproteobacteria
Ruegeria sp. P4 [QJJO]
507104
507015
-
Ser
CGA
[ENA]
¡û
>W2010582918
JAAZTG010000032
Alphaproteobacteria
Rhodobacteraceae bacterium R_SAG4 [JAAZTG]
8240
8151
-
Ser
CGA
[ENA]
¡û
>W2011064576
NSBU01000007
Alphaproteobacteria
Actibacterium sp. JN33 [NSBU]
648077
647988
-
Ser
CGA
[ENA]
¡û
>W2110029090
BMKN01000001
Alphaproteobacteria
Actibacterium pelagium CGMCC 1.16012 [BMKN]
974105
974194
+
Ser
CGA
[ENA]
¡û
>W2110658259
JAHWRP010000003
Alphaproteobacteria
Epibacterium sp. DP7N7-1 [JAHWRP]
248773
248684
-
Ser
CGA
[ENA]
¡û
>W2110706930
JAIWIT010000011
Alphaproteobacteria
Epibacterium mobile TN7-3 [JAIWIT]
31326
31415
+
Ser
CGA
[ENA]
¡û
>C231129551
CP072991
Alphaproteobacteria
Loktanella salsilacus 1A07893 [CP072991]
1461790
1461701
-
Ser
CGA
-
¡û
>C231129596
CP072994
Alphaproteobacteria
Loktanella salsilacus 1A07899 [CP072994]
1556958
1556869
-
Ser
CGA
-
¡û
>W10127160
AEEB01000010
Alphaproteobacteria
Ahrensia sp. R2A130 [AEEB]
9660
9749
+
Ser
CGA
[ENA]
¡û
>C241220305
CP110384
Alphaproteobacteria
Tritonibacter mobilis A3R06 [CP110384]
1517131
1517220
+
Ser
CGA
-
¡û
>C241267452
CP126134
Alphaproteobacteria
Tritonibacter sp. AK171 [CP126134]
1467960
1468049
+
Ser
CGA
-
¡û
>W2310023654
BSMZ01000003
Alphaproteobacteria
Tritonibacter mobilis NBRC 101030 [BSMZ]
186410
186321
-
Ser
CGA
[ENA]
¡û
>W11134648
AEEB01000010
Alphaproteobacteria
Ahrensia sp. R2A130 [AEEB]
9660
9749
+
Ser
CGA
[ENA]
¡û
>C161085251
CP015230
Alphaproteobacteria
Tritonibacter mobilis F1926 [CP015230]
1538777
1538866
+
Ser
CGA
[Ensembl]
¡û
>W1610775306
LNVY01000015
Alphaproteobacteria
Tritonibacter mobilis [LNVY]
232028
232117
+
Ser
CGA
[ENA]
¡û
>W1610775335
LNWA01000010
Alphaproteobacteria
Tritonibacter mobilis [LNWA]
441755
441844
+
Ser
CGA
[ENA]
¡û
>W1610775390
LNWB01000004
Alphaproteobacteria
Tritonibacter mobilis [LNWB]
160307
160218
-
Ser
CGA
[ENA]
¡û
>W1610775425
LNWC01000001
Alphaproteobacteria
Tritonibacter mobilis [LNWC]
111748
111659
-
Ser
CGA
[ENA]
¡û
>W1610775466
LNWD01000001
Alphaproteobacteria
Tritonibacter mobilis [LNWD]
441755
441844
+
Ser
CGA
[ENA]
¡û
>W1610775516
LNWE01000003
Alphaproteobacteria
Tritonibacter mobilis [LNWE]
136511
136600
+
Ser
CGA
[ENA]
¡û
>W1610775767
LNWJ01000014
Alphaproteobacteria
Tritonibacter mobilis [LNWJ]
371746
371657
-
Ser
CGA
[ENA]
¡û
>W1610775802
LNWK01000003
Alphaproteobacteria
Tritonibacter mobilis [LNWK]
162714
162625
-
Ser
CGA
[ENA]
¡û
>W1610775838
LNWL01000003
Alphaproteobacteria
Tritonibacter mobilis [LNWL]
441836
441925
+
Ser
CGA
[ENA]
¡û
>W1610775884
LNWM01000001
Alphaproteobacteria
Tritonibacter mobilis [LNWM]
441755
441844
+
Ser
CGA
[ENA]
¡û
>W1610775997
LNWO01000009
Alphaproteobacteria
Tritonibacter mobilis [LNWO]
369558
369469
-
Ser
CGA
[ENA]
¡û
>W1610776039
LNWP01000005
Alphaproteobacteria
Tritonibacter mobilis [LNWP]
432243
432154
-
Ser
CGA
[ENA]
¡û
>W1610776083
LNWQ01000001
Alphaproteobacteria
Tritonibacter mobilis [LNWQ]
431105
431016
-
Ser
CGA
[ENA]
¡û
>W1610776123
LNWR01000002
Alphaproteobacteria
Tritonibacter mobilis [LNWR]
572153
572242
+
Ser
CGA
[ENA]
¡û
>W1610776183
LNWS01000005
Alphaproteobacteria
Tritonibacter mobilis [LNWS]
577329
577418
+
Ser
CGA
[ENA]
¡û
>W1610776233
LNWT01000007
Alphaproteobacteria
Tritonibacter mobilis [LNWT]
160186
160097
-
Ser
CGA
[ENA]
¡û
>W1610776381
LNWW01000004
Alphaproteobacteria
Tritonibacter mobilis [LNWW]
679253
679342
+
Ser
CGA
[ENA]
¡û
>W1610776426
LNWX01000012
Alphaproteobacteria
Tritonibacter mobilis [LNWX]
390116
390205
+
Ser
CGA
[ENA]
¡û
>W1610776532
LNWZ01000005
Alphaproteobacteria
Tritonibacter mobilis [LNWZ]
214295
214206
-
Ser
CGA
[ENA]
¡û
>W1610776557
LNXA01000001
Alphaproteobacteria
Tritonibacter mobilis [LNXA]
136511
136600
+
Ser
CGA
[ENA]
¡û
>W1610776613
LNXB01000001
Alphaproteobacteria
Tritonibacter mobilis [LNXB]
891590
891679
+
Ser
CGA
[ENA]
¡û
>W1610776664
LNXC01000004
Alphaproteobacteria
Tritonibacter mobilis [LNXC]
136511
136600
+
Ser
CGA
[ENA]
¡û
>W1610776713
LNXD01000001
Alphaproteobacteria
Tritonibacter mobilis [LNXD]
431104
431015
-
Ser
CGA
[ENA]
¡û
>W1610776759
LNXE01000005
Alphaproteobacteria
Tritonibacter mobilis [LNXE]
195256
195167
-
Ser
CGA
[ENA]
¡û
>W1610776803
LNXF01000005
Alphaproteobacteria
Tritonibacter mobilis [LNXF]
441755
441844
+
Ser
CGA
[ENA]
¡û
>W1610776859
LNXG01000004
Alphaproteobacteria
Tritonibacter mobilis [LNXG]
849181
849270
+
Ser
CGA
[ENA]
¡û
>W1610776908
LNXH01000005
Alphaproteobacteria
Tritonibacter mobilis [LNXH]
863468
863557
+
Ser
CGA
[ENA]
¡û
>W1610776945
LNXI01000003
Alphaproteobacteria
Tritonibacter mobilis [LNXI]
441755
441844
+
Ser
CGA
[ENA]
¡û
>W1610776992
LNXJ01000002
Alphaproteobacteria
Tritonibacter mobilis [LNXJ]
441755
441844
+
Ser
CGA
[ENA]
¡û
>W1610777051
LNXK01000005
Alphaproteobacteria
Tritonibacter mobilis [LNXK]
431104
431015
-
Ser
CGA
[ENA]
¡û
>W1610777102
LNXL01000004
Alphaproteobacteria
Tritonibacter mobilis [LNXL]
431104
431015
-
Ser
CGA
[ENA]
¡û
>W1610777146
LNXM01000001
Alphaproteobacteria
Tritonibacter mobilis [LNXM]
431104
431015
-
Ser
CGA
[ENA]
¡û
>W1610777188
LNXN01000006
Alphaproteobacteria
Tritonibacter mobilis [LNXN]
441756
441845
+
Ser
CGA
[ENA]
¡û
>W1610777242
LNXO01000003
Alphaproteobacteria
Tritonibacter mobilis [LNXO]
431104
431015
-
Ser
CGA
[ENA]
¡û
>W1610777300
LNXP01000012
Alphaproteobacteria
Tritonibacter mobilis [LNXP]
577329
577418
+
Ser
CGA
[ENA]
¡û
>W1610777389
LNXR01000005
Alphaproteobacteria
Tritonibacter mobilis [LNXR]
538659
538748
+
Ser
CGA
[ENA]
¡û
>W1710508609
FMWG01000003
Alphaproteobacteria
Epibacterium ulvae [FMWG]
154474
154385
-
Ser
CGA
[ENA]
¡û
>W1710528673
FNNK01000005
Alphaproteobacteria
Tritonibacter mobilis [FNNK]
136586
136675
+
Ser
CGA
[ENA]
¡û
>W1710582670
FQUE01000001
Alphaproteobacteria
Loktanella atrilutea [FQUE]
806282
806371
+
Ser
CGA
[ENA]
¡û
>W1710586269
FQXB01000001
Alphaproteobacteria
Cognatiyoonia sediminum [FQXB]
731688
731777
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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