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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339885 (31 seq.)
>A171000006
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
585273
585345
+
Ala
GGC
-
¡û
>A171000776
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
2048168
2048240
+
Ala
GGC
-
¡û
>A171004172
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
1305650
1305722
+
Ala
GGC
-
¡û
>A171007272
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
962729
962800
+
Ala
GGC
-
¡û
>A171007460
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
790214
790142
-
Ala
GGC
-
¡û
>WENV180318648
OBKM01003581
[OBKM] metagenome; water
4468
4539
+
Ala
GGC
[ENA]
¢þ
>WENV180588387
OCOP01041320
[OCOP] marine metagenome; water
155
80
-
Ala
GGC
[ENA]
¢þ
>At0799
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
593999
594070
+
Ala
GGC
[Ensembl]
¡û
>WENV170681960
LFFM01004258
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
899
827
-
Ala
GGC
[ENA]
¢þ
>WENV170702601
LKMJ01002827
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1024
953
-
Ala
GGC
[ENA]
¢þ
>W1910006897
BBMP01000004
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
37313
37242
-
Ala
GGC
[ENA]
¡û
>W1910230041
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
600948
600876
-
Ala
GGC
[ENA]
¡û
>W1910230345
FOOQ01000001
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
1065462
1065534
+
Ala
GGC
[ENA]
¡û
>W1911749396
QWGG01000001
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
142647
142575
-
Ala
GGC
[ENA]
¡û
>W1610000814
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
1678549
1678475
-
Ala
GGC
[ENA]
¡û
>W1610004177
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
2052830
2052758
-
Ala
GGC
[ENA]
¡û
>W1610012635
AOIQ01000008
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
125435
125363
-
Ala
GGC
[ENA]
¡û
>W1610012829
AOIU01000035
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
127025
126954
-
Ala
GGC
[ENA]
¡û
>W1610014545
AOMC01000070
Euryarchaeota
Halococcus morrhuae DSM 1307 [AOMC]
55470
55399
-
Ala
GGC
[ENA]
¡û
>W1610014581
AOMD01000016
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
129166
129095
-
Ala
GGC
[ENA]
¡û
>W1610014633
AOME01000070
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
267709
267637
-
Ala
GGC
[ENA]
¡û
>W1610014681
AOMF01000159
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
66295
66366
+
Ala
GGC
[ENA]
¡û
>W1610040559
BAFM01000018
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
8584
8655
+
Ala
GGC
[ENA]
¡û
>W1610061883
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
741289
741218
-
Ala
GGC
[ENA]
¡û
>W1610085090
CEML01000002
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
572017
571945
-
Ala
GGC
[ENA]
¡û
>W1610085109
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
1892283
1892355
+
Ala
GGC
[ENA]
¡û
>W1610085148
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
1935562
1935634
+
Ala
GGC
[ENA]
¡û
>W1610085187
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
1977524
1977596
+
Ala
GGC
[ENA]
¡û
>W1610085248
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
580700
580628
-
Ala
GGC
[ENA]
¡û
>W1610085289
CEMR01000002
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
580660
580588
-
Ala
GGC
[ENA]
¡û
>W1610085330
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
580603
580531
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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