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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339928 (42 seq.)
>W1710777575
LJBS01000006
Bacillota
Pediococcus acidilactici [LJBS]
33271
33342
+
Arg
CCG
[ENA]
¡û
>W1710915781
LNUM01000015
Bacillota
Pediococcus acidilactici [LNUM]
91839
91768
-
Arg
CCG
[ENA]
¡û
>W1711005587
LQNQ01000053
Bacillota
Pediococcus acidilactici [LQNQ]
43583
43654
+
Arg
CCG
[ENA]
¡û
>W1711005649
LQNR01000117
Bacillota
Pediococcus acidilactici [LQNR]
39290
39361
+
Arg
CCG
[ENA]
¡û
>W1711258413
LYUJ01000016
Bacillota
Pediococcus acidilactici [LYUJ]
263273
263202
-
Arg
CCG
[ENA]
¡û
>W1711585768
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
1088391
1088462
+
Arg
CCG
[ENA]
¡û
>C171036798
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
1902866
1902795
-
Arg
CCG
-
¡û
>C171083310
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
473603
473532
-
Arg
CCG
-
¡û
>C171119617
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
482075
482004
-
Arg
CCG
-
¡û
>C171119673
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
482055
481984
-
Arg
CCG
-
¡û
>C171120477
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
482075
482004
-
Arg
CCG
-
¡û
>W131146251
AQGT01000013
Bacillota
Pediococcus acidilactici D3 [AQGT]
55395
55466
+
Arg
CCG
[ENA]
¡û
>W131239177
BANK01000010
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
46208
46279
+
Arg
CCG
[ENA]
¡û
>W141280112
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
573556
573627
+
Arg
CCG
[ENA]
¡û
>WENV183563722
OOBX01007450
[OOBX] human gut metagenome; human gut
584
655
+
Arg
CCG
[ENA]
¢þ
>WENV183762141
PPYE01275151
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
44683
44612
-
Arg
CCG
[ENA]
¢þ
>WENV183789032
PPYF01373375
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1110
1039
-
Arg
CCG
[ENA]
¢þ
>WENV183792295
PPYF01458340
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7305
7234
-
Arg
CCG
[ENA]
¢þ
>C191035375
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
469474
469403
-
Arg
CCG
-
¡û
>C191106202
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
1603141
1603212
+
Arg
CCG
-
¡û
>C191135613
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
462250
462179
-
Arg
CCG
-
¡û
>C191135671
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
517902
517831
-
Arg
CCG
-
¡û
>C191137804
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
1481708
1481779
+
Arg
CCG
-
¡û
>W1910181673
BJMF01000006
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
78614
78685
+
Arg
CCG
[ENA]
¡û
>W1910373947
FUHV01000013
Bacillota
Pediococcus acidilactici S7 [FUHV]
267254
267183
-
Arg
CCG
[ENA]
¡û
>W1911696854
QNGC01000007
Bacillota
Pediococcus acidilactici GS1 [QNGC]
70490
70561
+
Arg
CCG
[ENA]
¡û
>W1911798460
QYRQ01000020
Bacillota
Pediococcus acidilactici WT [QYRQ]
70490
70561
+
Arg
CCG
[ENA]
¡û
>W1810049842
PCYQ01000004
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
130661
130590
-
Arg
CCG
[ENA]
¡û
>W10105137
ACXB01000012
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
25059
25130
+
Arg
CCG
[ENA]
¡û
>W10127376
AEEG01000009
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
67437
67508
+
Arg
CCG
[ENA]
¡û
>W11107457
ACXB01000012
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
25059
25130
+
Arg
CCG
[ENA]
¡û
>W11134864
AEEG01000009
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
67437
67508
+
Arg
CCG
[ENA]
¡û
>W121011463
AGKB01000005
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
288303
288232
-
Arg
CCG
[ENA]
¡û
>W1610527750
JQAQ01000004
Bacillota
Pediococcus acidilactici [JQAQ]
235159
235088
-
Arg
CCG
[ENA]
¡û
>W1610529456
JQCC01000002
Bacillota
Pediococcus acidilactici [JQCC]
258976
258905
-
Arg
CCG
[ENA]
¡û
>W1610641761
LJBS01000006
Bacillota
Pediococcus acidilactici [LJBS]
33271
33342
+
Arg
CCG
[ENA]
¡û
>W1610774020
LNUM01000015
Bacillota
Pediococcus acidilactici [LNUM]
91839
91768
-
Arg
CCG
[ENA]
¡û
>W1610856237
LQNQ01000053
Bacillota
Pediococcus acidilactici [LQNQ]
43583
43654
+
Arg
CCG
[ENA]
¡û
>W1610856299
LQNR01000117
Bacillota
Pediococcus acidilactici [LQNR]
39290
39361
+
Arg
CCG
[ENA]
¡û
>W1611020885
LYUJ01000016
Bacillota
Pediococcus acidilactici [LYUJ]
263273
263202
-
Arg
CCG
[ENA]
¡û
>W1710629381
JQAQ01000004
Bacillota
Pediococcus acidilactici [JQAQ]
235159
235088
-
Arg
CCG
[ENA]
¡û
>W1710631046
JQCC01000002
Bacillota
Pediococcus acidilactici [JQCC]
258976
258905
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK