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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339957 (127 seq.)
>A171002753
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
2703266
2703338
+
Ala
GGC
-
¡û
>A171002794
CP003117
Euryarchaeota
Methanothrix harundinacea 6Ac [CP003117]
1144178
1144249
+
Ala
GGC
-
¡û
>A171003025
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
702339
702266
-
Ala
GGC
-
¡û
>A171003611
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
409150
409078
-
Ala
GGC
-
¡û
>A171004373
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2418259
2418187
-
Ala
GGC
-
¡û
>A171004523
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
3062025
3061953
-
Ala
GGC
-
¡û
>A171004573
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
967514
967586
+
Ala
GGC
-
¡û
>A171004648
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
1167319
1167247
-
Ala
GGC
-
¡û
>A171004700
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
1091378
1091306
-
Ala
GGC
-
¡û
>A171004732
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3009266
3009338
+
Ala
GGC
-
¡û
>A171004774
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
1432376
1432449
+
Ala
GGC
-
¡û
>A171004827
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
1376564
1376637
+
Ala
GGC
-
¡û
>A171004906
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
4089778
4089705
-
Ala
GGC
-
¡û
>A171004934
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
1095628
1095700
+
Ala
GGC
-
¡û
>A171004986
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
1042060
1042132
+
Ala
GGC
-
¡û
>A171005038
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
1092641
1092713
+
Ala
GGC
-
¡û
>A171005089
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
1083352
1083424
+
Ala
GGC
-
¡û
>A171005143
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
1114880
1114952
+
Ala
GGC
-
¡û
>A171005212
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
2887264
2887336
+
Ala
GGC
-
¡û
>A171005282
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
1321463
1321390
-
Ala
GGC
-
¡û
>A171005340
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
2254262
2254189
-
Ala
GGC
-
¡û
>A171005392
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
441931
441857
-
Ala
GGC
-
¡û
>A171005413
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
3599469
3599542
+
Ala
GGC
-
¡û
>A171005469
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
3604156
3604228
+
Ala
GGC
-
¡û
>A171005521
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
3629864
3629936
+
Ala
GGC
-
¡û
>A171005565
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
932672
932744
+
Ala
GGC
-
¡û
>A171005650
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
2153446
2153374
-
Ala
GGC
-
¡û
>A178000169
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
799667
799773
+
Ala
GGC
-
¡û
>WENV180289370
OBIS01003467
[OBIS] soil metagenome; Alaskan Permafrost
242
170
-
Ala
GGC
[ENA]
¢þ
>WENV180317877
OBKL01000499
[OBKL] soil metagenome; Alaskan Permafrost
1263
1191
-
Ala
GGC
[ENA]
¢þ
>WENV180331314
OBLA01001235
[OBLA] soil metagenome; Alaskan Permafrost
186
258
+
Ala
GGC
[ENA]
¢þ
>WENV180345442
OBLN01000129
[OBLN] sediment metagenome; sediment
4840
4911
+
Ala
GGC
[ENA]
¢þ
>WENV181361807
OFOJ01002301
[OFOJ] sediment metagenome; Lake sediment
440
512
+
Ala
GGC
[ENA]
¢þ
>WENV170001311
AGCH01000096
[AGCH] permafrost metagenome; Alaskan permafrost
4398
4326
-
Ala
GGC
[ENA]
¢þ
>WENV170001314
AGCH01000099
[AGCH] permafrost metagenome; Alaskan permafrost
4300
4228
-
Ala
GGC
[ENA]
¢þ
>WENV170007968
AMWB02168163
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
80
7
-
Ala
GGC
[ENA]
¢þ
>At1005
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
2383342
2383268
-
Ala
GGC
[Ensembl]
¡û
>At1386
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
3890350
3890421
+
Ala
GGC
[Ensembl]
¡û
>At1489
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
2435284
2435213
-
Ala
GGC
[Ensembl]
¡û
>At1529
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
492875
492804
-
Ala
GGC
[Ensembl]
¡û
>WENV170677105
LDZT01002508
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1433
1359
-
Ala
GGC
[ENA]
¢þ
>WENV170684843
LFRM01060814
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
20049
19977
-
Ala
GGC
[ENA]
¢þ
>WENV170717693
LSQX01046064
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7
79
+
Ala
GGC
[ENA]
¢þ
>WENV170784247
MCHG01000221
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
4179
4107
-
Ala
GGC
[ENA]
¢þ
>W1910226831
FNCA01000004
Euryarchaeota
Methanolobus vulcani PL 12/M [FNCA]
34222
34148
-
Ala
GGC
[ENA]
¡û
>W1910229849
FOHQ01000002
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
354417
354343
-
Ala
GGC
[ENA]
¡û
>W1910230558
FOUJ01000001
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
277978
278050
+
Ala
GGC
[ENA]
¡û
>W1910230908
FPAO01000007
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
28551
28479
-
Ala
GGC
[ENA]
¡û
>W1910569237
JJOR01000066
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
2168
2240
+
Ala
GGC
[ENA]
¡û
>W1910569327
JJOS01000124
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
130004
129932
-
Ala
GGC
[ENA]
¡û
>W1910569329
JJOT01000020
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
108456
108528
+
Ala
GGC
[ENA]
¡û
>W1910569413
JJOU01000159
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
7285
7357
+
Ala
GGC
[ENA]
¡û
>W1910569475
JJOV01000090
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
219763
219690
-
Ala
GGC
[ENA]
¡û
>W1910569511
JJOW01000215
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
7858
7931
+
Ala
GGC
[ENA]
¡û
>W1910569535
JJOX01000027
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
16778
16851
+
Ala
GGC
[ENA]
¡û
>W1910569625
JJOY01000051
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
13069
12996
-
Ala
GGC
[ENA]
¡û
>W1910569669
JJOZ01000055
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
1266
1193
-
Ala
GGC
[ENA]
¡û
>W1910569689
JJPA01000060
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
13444
13516
+
Ala
GGC
[ENA]
¡û
>W1910569775
JJPB01000122
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
30235
30163
-
Ala
GGC
[ENA]
¡û
>W1910569791
JJPC01000028
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
75162
75090
-
Ala
GGC
[ENA]
¡û
>W1910569881
JJPD01000185
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
7450
7522
+
Ala
GGC
[ENA]
¡û
>W1910569923
JJPE01000126
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
13200
13272
+
Ala
GGC
[ENA]
¡û
>W1910569971
JJPF01000085
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
13465
13537
+
Ala
GGC
[ENA]
¡û
>W1910570028
JJPG01000141
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
31582
31510
-
Ala
GGC
[ENA]
¡û
>W1910570068
JJPH01000071
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
30235
30163
-
Ala
GGC
[ENA]
¡û
>W1910570099
JJPI01000023
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
18852
18924
+
Ala
GGC
[ENA]
¡û
>W1910570150
JJPJ01000032
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
30034
29962
-
Ala
GGC
[ENA]
¡û
>W1910570216
JJPK01000058
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
59936
59864
-
Ala
GGC
[ENA]
¡û
>W1910570255
JJPL01000055
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
87512
87440
-
Ala
GGC
[ENA]
¡û
>W1910570325
JJPM01000195
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
3356
3428
+
Ala
GGC
[ENA]
¡û
>W1910570359
JJPN01000045
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
31541
31469
-
Ala
GGC
[ENA]
¡û
>W1910570433
JJPO01000133
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
8005
7933
-
Ala
GGC
[ENA]
¡û
>W1910570464
JJPP01000045
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
8025
7953
-
Ala
GGC
[ENA]
¡û
>W1910570511
JJPQ01000044
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
14914
14986
+
Ala
GGC
[ENA]
¡û
>W1910570585
JJPR01000105
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
8005
7933
-
Ala
GGC
[ENA]
¡û
>W1910570616
JJPS01000101
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
7496
7568
+
Ala
GGC
[ENA]
¡û
>W1910570685
JJPT01000147
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
23892
23964
+
Ala
GGC
[ENA]
¡û
>W1910570719
JJPU01000104
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
13149
13221
+
Ala
GGC
[ENA]
¡û
>W1910570763
JJPV01000035
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
18700
18772
+
Ala
GGC
[ENA]
¡û
>W1910570833
JJPW01000056
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
59869
59797
-
Ala
GGC
[ENA]
¡û
>W1910570850
JJPX01000001
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
25328
25400
+
Ala
GGC
[ENA]
¡û
>W1910570918
JJPY01000056
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
20417
20489
+
Ala
GGC
[ENA]
¡û
>W1910570974
JJPZ01000050
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
49007
48935
-
Ala
GGC
[ENA]
¡û
>W1910571031
JJQA01000089
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
109438
109366
-
Ala
GGC
[ENA]
¡û
>W1910571058
JJQB01000023
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
108103
108031
-
Ala
GGC
[ENA]
¡û
>W1910571144
JJQC01000148
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
17727
17799
+
Ala
GGC
[ENA]
¡û
>W1910571153
JJQD01000005
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
62038
61966
-
Ala
GGC
[ENA]
¡û
>W1910571241
JJQE01000154
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
30368
30296
-
Ala
GGC
[ENA]
¡û
>W1910571288
JJQF01000113
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
148005
147933
-
Ala
GGC
[ENA]
¡û
>W1910571355
JJQG01000169
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
75202
75130
-
Ala
GGC
[ENA]
¡û
>W1910571372
JJQH01000104
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
19630
19702
+
Ala
GGC
[ENA]
¡û
>W1910571412
JJQI01000005
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
30390
30318
-
Ala
GGC
[ENA]
¡û
>W1910571502
JJQJ01000213
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
2754
2826
+
Ala
GGC
[ENA]
¡û
>W1910571514
JJQK01000041
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
1624
1696
+
Ala
GGC
[ENA]
¡û
>W1910571607
JJQL01000089
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
103948
104021
+
Ala
GGC
[ENA]
¡û
>W1910571668
JJQM01000149
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
75069
74997
-
Ala
GGC
[ENA]
¡û
>W1910571689
JJQN01000038
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
30173
30101
-
Ala
GGC
[ENA]
¡û
>W1910571759
JJQO01000095
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
2130
2202
+
Ala
GGC
[ENA]
¡û
>W1910571815
JJQP01000134
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
16965
17037
+
Ala
GGC
[ENA]
¡û
>W1910571886
JJQQ01000145
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
7917
7845
-
Ala
GGC
[ENA]
¡û
>W1910571936
JJQR01000106
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
75219
75147
-
Ala
GGC
[ENA]
¡û
>W1910571978
JJQS01000063
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
2130
2202
+
Ala
GGC
[ENA]
¡û
>W1910572037
JJQT01000202
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
274
346
+
Ala
GGC
[ENA]
¡û
>W1910572093
JJQU01000183
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
7463
7535
+
Ala
GGC
[ENA]
¡û
>W1910572118
JJQV01000032
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
75168
75096
-
Ala
GGC
[ENA]
¡û
>W1910572189
JJQW01000122
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
2168
2240
+
Ala
GGC
[ENA]
¡û
>W1910572218
JJQX01000062
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
286
358
+
Ala
GGC
[ENA]
¡û
>W1910572283
JJQY01000140
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
7357
7430
+
Ala
GGC
[ENA]
¡û
>W1910572314
JJQZ01000068
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
2130
2202
+
Ala
GGC
[ENA]
¡û
>W1910572378
JJRA01000094
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
75202
75130
-
Ala
GGC
[ENA]
¡û
>W1910572421
JJRB01000082
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
75071
74999
-
Ala
GGC
[ENA]
¡û
>W1910575062
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
3887395
3887323
-
Ala
GGC
[ENA]
¡û
>W1910575268
JRHO01000009
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
443907
443833
-
Ala
GGC
[ENA]
¡û
>W1910635269
LMVP01000516
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
14954
15027
+
Ala
GGC
[ENA]
¡û
>W1910655409
LZPK01000374
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
1933
1861
-
Ala
GGC
[ENA]
¡û
>W1910661879
MBKP01000049
Euryarchaeota
Methanolobus psychrotolerans YSF-03 [MBKP]
10982
10910
-
Ala
GGC
[ENA]
¡û
>W1910694792
MDTP02000082
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
4179
4107
-
Ala
GGC
[ENA]
¡û
>W1910783582
MPPA01000047
Euryarchaeota
Methanococcoides sp. EBM-47 [MPPA]
64542
64615
+
Ala
GGC
[ENA]
¡û
>W1911581836
PGGK01000025
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
11849
11921
+
Ala
GGC
[ENA]
¡û
>W1610000023
AAAR03000004
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
207767
207695
-
Ala
GGC
[ENA]
¡û
>W1610000116
AADH02000001
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
22267
22341
+
Ala
GGC
[ENA]
¡û
>W1610032621
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
470471
470397
-
Ala
GGC
[ENA]
¡û
>W1610046880
BBCW01000007
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
10002
10075
+
Ala
GGC
[ENA]
¡û
>W1610048625
BBEF01000185
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
360
432
+
Ala
GGC
[ENA]
¡û
>W1610605090
LFRP01000011
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
20049
19977
-
Ala
GGC
[ENA]
¡û
>W1610670252
LKAZ01000042
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
81548
81620
+
Ala
GGC
[ENA]
¡û
>W1610919910
LSRV01000039
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
6739
6665
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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